BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 611 papers shown

Title
Exploring Transformers in Natural Language Generation: GPT, BERT, and XLNet M. O. Topal Anil Bas Imke van Heerden LLMAG AI4CE 26 88 0 16 Feb 2021
Biomedical Question Answering: A Survey of Approaches and Challenges Qiao Jin Zheng Yuan Guangzhi Xiong Qian Yu Huaiyuan Ying Chuanqi Tan Mosha Chen Songfang Huang Xiaozhong Liu Sheng Yu 29 96 0 10 Feb 2021
Memorization vs. Generalization: Quantifying Data Leakage in NLP Performance Evaluation Aparna Elangovan Jiayuan He Karin Verspoor TDI FedML 167 89 0 03 Feb 2021
Drug and Disease Interpretation Learning with Biomedical Entity Representation Transformer Z. Miftahutdinov Artur Kadurin R. Kudrin E. Tutubalina MedIm 41 8 0 22 Jan 2021
Extracting Lifestyle Factors for Alzheimer's Disease from Clinical Notes Using Deep Learning with Weak Supervision Zitao Shen Yoonkwon Yi A. Bompelli Fang Yu Yanshan Wang Rui Zhang 19 11 0 22 Jan 2021
A Survey on Extraction of Causal Relations from Natural Language Text Jie Yang S. Han Josiah Poon 3DV CML 101 85 0 16 Jan 2021
BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer Po-Ting Lai Zhiyong Lu MedIm 38 49 0 11 Jan 2021
Model Extraction and Defenses on Generative Adversarial Networks Hailong Hu Jun Pang SILM MIACV 31 14 0 06 Jan 2021
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities? Hyunjae Kim Jaewoo Kang AI4CE 91 21 0 01 Jan 2021
Explaining Black-box Models for Biomedical Text Classification M. Moradi Matthias Samwald 41 21 0 20 Dec 2020
PCT: Point cloud transformer Meng-Hao Guo Junxiong Cai Zheng-Ning Liu Tai-Jiang Mu Ralph Robert Martin Shimin Hu ViT 3DPC 65 1,582 0 17 Dec 2020
Nested Named Entity Recognition with Partially-Observed TreeCRFs Yao Fu Chuanqi Tan Mosha Chen Songfang Huang Fei Huang 86 48 0 15 Dec 2020
A Practical Approach towards Causality Mining in Clinical Text using Active Transfer Learning Musarrat Hussain Fahad Ahmed Satti Jamil Hussain Taqdir Ali Syed Imran Ali H. M. Bilal Gwang Hoon Park Sungyoung Lee 19 7 0 10 Dec 2020
CrossNER: Evaluating Cross-Domain Named Entity Recognition Zihan Liu Yan Xu Tiezheng Yu Wenliang Dai Ziwei Ji Samuel Cahyawijaya Andrea Madotto Pascale Fung 78 146 0 08 Dec 2020
COVIDScholar: An automated COVID-19 research aggregation and analysis platform Amalie Trewartha John Dagdelen Haoyan Huo Kevin Cruse Zheren Wang ... Akshay Subramanian Yuxing Fei Benjamin Justus Kristin A. Persson Gerbrand Ceder 33 20 0 07 Dec 2020
End-to-End QA on COVID-19: Domain Adaptation with Synthetic Training R. Reddy Bhavani Iyer Md Arafat Sultan Rong Zhang Avirup Sil Vittorio Castelli Radu Florian Salim Roukos OOD 20 19 0 02 Dec 2020
Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health Denis R. Newman-Griffis Eric Fosler-Lussier 24 18 0 27 Nov 2020
Denmark's Participation in the Search Engine TREC COVID-19 Challenge: Lessons Learned about Searching for Precise Biomedical Scientific Information on COVID-19 Lucas Chaves Lima Casper Hansen Christian B. Hansen Dongsheng Wang Maria Maistro Birger Larsen J. Simonsen Christina Lioma 27 2 0 25 Nov 2020
Biomedical Named Entity Recognition at Scale Veysel Kocaman D. Talby 25 67 0 12 Nov 2020
CODER: Knowledge infused cross-lingual medical term embedding for term normalization Zheng Yuan Zhengyun Zhao Haixia Sun Jiao Li Fei Wang Sheng Yu MedIm 26 95 0 05 Nov 2020
CMT in TREC-COVID Round 2: Mitigating the Generalization Gaps from Web to Special Domain Search Chenyan Xiong Zhenghao Liu Si Sun Zhuyun Dai Kaitao Zhang S. Yu Zhiyuan Liu Hoifung Poon Jianfeng Gao Paul N. Bennett 30 10 0 03 Nov 2020
A Comprehensive Survey on Word Representation Models: From Classical to State-Of-The-Art Word Representation Language Models Usman Naseem Imran Razzak S. Khan M. Prasad 14 156 0 28 Oct 2020
WNUT-2020 Task 1 Overview: Extracting Entities and Relations from Wet Lab Protocols Jeniya Tabassum Sydney Lee Wei Xu Alan Ritter 18 18 0 27 Oct 2020
HateBERT: Retraining BERT for Abusive Language Detection in English Tommaso Caselli Valerio Basile Jelena Mitrović Michael Granitzer 24 359 0 23 Oct 2020
A Survey on Recent Approaches for Natural Language Processing in Low-Resource Scenarios Michael A. Hedderich Lukas Lange Heike Adel Jannik Strötgen Dietrich Klakow 221 287 0 23 Oct 2020
Clustering-based Inference for Biomedical Entity Linking Rico Angell Nicholas Monath Sunil Mohan Nishant Yadav Andrew McCallum 38 4 0 21 Oct 2020
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters Hicham El Boukkouri Olivier Ferret Thomas Lavergne Hiroshi Noji Pierre Zweigenbaum Junichi Tsujii 77 156 0 20 Oct 2020
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus George Michalopoulos Yuanxin Wang H. Kaka Helen H. Chen Alexander Wong 33 122 0 20 Oct 2020
Explainable Automated Fact-Checking for Public Health Claims Neema Kotonya Francesca Toni 218 250 0 19 Oct 2020
SmartTriage: A system for personalized patient data capture, documentation generation, and decision support Ilya Valmianski Nave Frost Navdeep Sood Yang Wang Baodong Liu James J. Zhu Sunil Karumuri Ian M. Finn D. Zisook 21 7 0 19 Oct 2020
TweetBERT: A Pretrained Language Representation Model for Twitter Text Analysis Mohiuddin Md Abdul Qudar Vijay K. Mago SSeg 28 35 0 17 Oct 2020
Pretrained Transformers for Text Ranking: BERT and Beyond Jimmy J. Lin Rodrigo Nogueira Andrew Yates VLM 244 612 0 13 Oct 2020
BioMegatron: Larger Biomedical Domain Language Model Hoo-Chang Shin Yang Zhang Evelina Bakhturina Raul Puri M. Patwary M. Shoeybi Raghav Mani AI4CE 27 144 0 12 Oct 2020
Predicting Clinical Trial Results by Implicit Evidence Integration Qiao Jin Chuanqi Tan Mosha Chen Xiaozhong Liu Songfang Huang 25 8 0 12 Oct 2020
Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease Name Recognition Yun He Ziwei Zhu Yin Zhang Qin Chen James Caverlee AI4MH 36 108 0 08 Oct 2020
Contrastive Cross-Modal Pre-Training: A General Strategy for Small Sample Medical Imaging G. Liang Connor Greenwell Yu Zhang Xiaoqin Wang Ramakanth Kavuluru Nathan Jacobs 42 21 0 06 Oct 2020
Effective Unsupervised Domain Adaptation with Adversarially Trained Language Models Thuy-Trang Vu Dinh Q. Phung Gholamreza Haffari 22 24 0 05 Oct 2020
Cost-effective Selection of Pretraining Data: A Case Study of Pretraining BERT on Social Media Xiang Dai Sarvnaz Karimi Ben Hachey Cécile Paris 24 35 0 02 Oct 2020
Data Transfer Approaches to Improve Seq-to-Seq Retrosynthesis Katsuhiko Ishiguro K. Ujihara R. Sawada Hirotaka Akita Masaaki Kotera 32 6 0 02 Oct 2020
Extracting Concepts for Precision Oncology from the Biomedical Literature N. Greenspan Yuqi Si Kirk Roberts 11 2 0 30 Sep 2020
What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Exams Di Jin Eileen Pan Nassim Oufattole W. Weng Hanyi Fang Peter Szolovits FaML ELM LM&MA 31 709 0 28 Sep 2020
Machine Knowledge: Creation and Curation of Comprehensive Knowledge Bases Gerhard Weikum Luna Dong Simon Razniewski Fabian M. Suchanek 37 125 0 24 Sep 2020
Global-to-Local Neural Networks for Document-Level Relation Extraction D. Wang Wei Hu E. Cao Weijian Sun NAI 18 118 0 22 Sep 2020
UPB at SemEval-2020 Task 11: Propaganda Detection with Domain-Specific Trained BERT Andrei Paraschiv Dumitru-Clementin Cercel M. Dascalu 13 17 0 11 Sep 2020
Biomedical named entity recognition using BERT in the machine reading comprehension framework Cong Sun Zhihao Yang Lei Wang Yin Zhang Hongfei Lin Jian Wang 15 94 0 03 Sep 2020
Query Focused Multi-document Summarisation of Biomedical Texts Diego Mollá Aliod Christopher Jones Vincent Nguyen 33 12 0 27 Aug 2020
Multimodal Learning for Cardiovascular Risk Prediction using EHR Data A. Bagheri T. K. Groenhof W. B. Veldhuis P. A. Jong F. Asselbergs Daniel L. Oberski 21 15 0 27 Aug 2020
Conceptualized Representation Learning for Chinese Biomedical Text Mining Ningyu Zhang Qianghuai Jia Kangping Yin Liang Dong Feng Gao Nengwei Hua OOD 42 65 0 25 Aug 2020
Ontology-driven weak supervision for clinical entity classification in electronic health records Jason Alan Fries E. Steinberg S. Khattar Scott L. Fleming J. Posada A. Callahan N. Shah 21 72 0 05 Aug 2020
Antibody Watch: Text Mining Antibody Specificity from the Literature Chun-Nan Hsu Chia-Hui Chang Thamolwan Poopradubsil Amanda Lo Karen A. William Ko-Wei Lin A. Bandrowski I. B. Ozyurt J. Grethe M. Martone 9 3 0 05 Aug 2020