BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 605 papers shown

Title
Any-to-Any Learning in Computational Pathology via Triplet Multimodal Pretraining Qichen Sun Zhengrui Guo Rui Peng Hao Chen Jinzhuo Wang MedIm 11 0 0 19 May 2025
MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models Xiaomin Li Mingye Gao Yuexing Hao Taoran Li Guangya Wan Zihan Wang Yijun Wang LM&MA ELM AI4MH 12 0 0 16 May 2025
HAMLET: Healthcare-focused Adaptive Multilingual Learning Embedding-based Topic Modeling Hajar Sakai Sarah Lam 34 0 0 12 May 2025
KDH-MLTC: Knowledge Distillation for Healthcare Multi-Label Text Classification Hajar Sakai Sarah Lam VLM 43 0 0 12 May 2025
Bridging Large Language Models and Single-Cell Transcriptomics in Dissecting Selective Motor Neuron Vulnerability Douglas Jiang Zilin Dai Luxuan Zhang Qiyi Yu Haoqi Sun Feng Tian 23 0 0 12 May 2025
CheXLearner: Text-Guided Fine-Grained Representation Learning for Progression Detection Yanjie Wang Junwen Duan Xinyu Li Jianxin Wang MedIm 39 0 0 11 May 2025
CellVerse: Do Large Language Models Really Understand Cell Biology? Fan Zhang Tianyu Liu Zhihong Zhu Yu Wang Haoyu Wang Donghao Zhou Yefeng Zheng Kun Wang X. Wu Pheng-Ann Heng ELM 36 0 0 09 May 2025
CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies Komal Gilani Marlo Verket Christof Peters Michel Dumontier Hans-Peter Brunner-La Rocca V. Urovi 40 0 0 07 May 2025
Knowledge Augmented Complex Problem Solving with Large Language Models: A Survey Da Zheng Lun Du Junwei Su Yuchen Tian Yuqi Zhu Jintian Zhang Lanning Wei Ningyu Zhang H. Chen LRM 61 0 0 06 May 2025
An Automated LLM-based Pipeline for Asset-Level Database Creation to Assess Deforestation Impact Avanija Menon Ovidiu Serban 29 0 0 05 May 2025
Retrieval-augmented in-context learning for multimodal large language models in disease classification Zaifu Zhan Shuang Zhou Xiaoshan Zhou Yongkang Xiao Jun Wang Jiawen Deng He Zhu Yu Hou Rui Zhang 51 0 0 04 May 2025
Knowledge-augmented Pre-trained Language Models for Biomedical Relation Extraction Mario Sanger Ulf Leser 52 0 0 01 May 2025
AdCare-VLM: Leveraging Large Vision Language Model (LVLM) to Monitor Long-Term Medication Adherence and Care Md Asaduzzaman Jabin Hanqi Jiang Y. Li Patrick Kaggwa Eugene Douglass Juliet N. Sekandi Tianming Liu LM&MA 76 0 0 01 May 2025
Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 60 2 0 29 Apr 2025
Llama-3.1-FoundationAI-SecurityLLM-Base-8B Technical Report Paul Kassianik Baturay Saglam Alexander Chen Blaine Nelson Anu Vellore ... Hyrum Anderson Kojin Oshiba Omar Santos Yaron Singer Amin Karbasi PILM 66 1 0 28 Apr 2025
Hallucinations and Key Information Extraction in Medical Texts: A Comprehensive Assessment of Open-Source Large Language Models Anindya Bijoy Das Shibbir Ahmed Shahnewaz Karim Sakib HILM LM&MA 57 0 0 27 Apr 2025
Advancing Scientific Text Classification: Fine-Tuned Models with Dataset Expansion and Hard-Voting Z. R. K. Rostam Gábor Kertész 29 0 0 26 Apr 2025
PatientDx: Merging Large Language Models for Protecting Data-Privacy in Healthcare José G. Moreno Jesus Lovon M'Rick Robin-Charlet Christine Damase-Michel L. Tamine MoMe LM&MA 58 0 0 24 Apr 2025
GLiNER-BioMed: A Suite of Efficient Models for Open Biomedical Named Entity Recognition Anthony Yazdani Ihor Stepanov Douglas Teodoro VLM AI4CE 44 0 0 01 Apr 2025
AfroXLMR-Social: Adapting Pre-trained Language Models for African Languages Social Media Text Tadesse Destaw Belay Israel Abebe Azime I. Ahmad Idris Abdulmumin A. Ayele Shamsuddeen Hassan Muhammad Shamsuddeen Hassan Muhammad Seid Muhie Yimam 36 0 0 24 Mar 2025
Accelerating Antibiotic Discovery with Large Language Models and Knowledge Graphs Maxime Delmas Magdalena Wysocka Danilo Miranda Gusicuma André Freitas LM&MA 50 0 0 20 Mar 2025
RAGO: Systematic Performance Optimization for Retrieval-Augmented Generation Serving Wenqi Jiang Suvinay Subramanian Cat Graves Gustavo Alonso Amir Yazdanbakhsh Vidushi Dadu 49 4 0 18 Mar 2025
Striving for Simplicity: Simple Yet Effective Prior-Aware Pseudo-Labeling for Semi-Supervised Ultrasound Image Segmentation Yaxiong Chen Yujie Wang Zixuan Zheng Jingliang Hu Yilei Shi Shengwu Xiong Xiao Xiang Zhu Lichao Mou 54 0 0 18 Mar 2025
Multi-Modal Foundation Models for Computational Pathology: A Survey Dong Li Guihong Wan Xintao Wu Xinyu Wu Xiaohui Chen Yi He Christine G. Lian Peter K. Sorger Yevgeniy R. Semenov Chen Zhao MedIm 48 0 0 12 Mar 2025
Enhanced Multi-Tuple Extraction for Alloys: Integrating Pointer Networks and Augmented Attention Mengzhe Hei Zhouran Zhang Qingbao Liu Yan Pan Xiang Zhao Yongqian Peng Yicong Ye Xin Zhang Shuxin Bai 49 0 0 10 Mar 2025
ExKG-LLM: Leveraging Large Language Models for Automated Expansion of Cognitive Neuroscience Knowledge Graphs Ali Sarabadani Kheirolah Rahsepar Fard Hamid Dalvand 67 0 0 09 Mar 2025
An Empirical Study of Causal Relation Extraction Transfer: Design and Data Sydney Anuyah Jack Vanschaik Palak Jain Sawyer Lehman Sunandan Chakraborty 49 0 0 08 Mar 2025
Leveraging Semantic Type Dependencies for Clinical Named Entity Recognition Linh Le Guido Zuccon Gianluca Demartini Genghong Zhao Xia Zhang 58 1 0 07 Mar 2025
Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions Yichong Zhao Susumu Goto 65 0 0 05 Mar 2025
Distilled Prompt Learning for Incomplete Multimodal Survival Prediction Yingxue Xu Fengtao Zhou Chenyu Zhao Yihui Wang Can Yang Hao Chen VLM OffRL 57 0 0 03 Mar 2025
Citrus: Leveraging Expert Cognitive Pathways in a Medical Language Model for Advanced Medical Decision Support G. Wang Minyu Gao Shuai Yang Ya Zhang Lizhi He ... Yexuan Zhang Wanyue Li Lu Chen Jintao Fei Xin Li 170 1 0 25 Feb 2025
Large Language Models are Powerful Electronic Health Record Encoders S. Hegselmann Georg von Arnim Tillmann Rheude Noel Kronenberg David Sontag Gerhard Hindricks R. Eils Benjamin Wild LM&MA 49 1 0 24 Feb 2025
Tabular Embeddings for Tables with Bi-Dimensional Hierarchical Metadata and Nesting Gyanendra Shrestha Chutain Jiang Sai Akula Vivek Yannam Anna Pyayt Michael Gubanov LMTD 97 0 0 20 Feb 2025
Assessing the Impact of the Quality of Textual Data on Feature Representation and Machine Learning Models Tabinda Sarwar Antonio Jose Jimeno Yepes Lawrence Cavedon 69 0 0 12 Feb 2025
KARMA: Leveraging Multi-Agent LLMs for Automated Knowledge Graph Enrichment Yuxing Lu Jinzhuo Wang 38 1 0 10 Feb 2025
Privacy-Preserving Dataset Combination Keren Fuentes Mimee Xu Irene Chen 45 0 0 09 Feb 2025
Enhancing Health Information Retrieval with RAG by Prioritizing Topical Relevance and Factual Accuracy Rishabh Uapadhyay Marco Viviani 69 0 0 07 Feb 2025
TMI-CLNet: Triple-Modal Interaction Network for Chronic Liver Disease Prognosis From Imaging, Clinical, and Radiomic Data Fusion Linglong Wu Xuhao Shan Ruiquan Ge Ruoyu Liang Chi Zhang Yonghong Li Ahmed Elazab Huoling Luo Yunbi Liu Changmiao Wang 61 0 0 02 Feb 2025
MEL: Legal Spanish Language Model David Betancur Sánchez Nuria Aldama García Á. Jiménez Marta Guerrero Nieto Patricia Marsà Morales Nicolás Serrano Salas Carlos García Hernán Pablo Haya Coll Elena Montiel Ponsoda Pablo Calleja Ibáñez 53 0 0 28 Jan 2025
Scaling Large Vision-Language Models for Enhanced Multimodal Comprehension In Biomedical Image Analysis Robinson Umeike N. Getty Fangfang Xia Rick L. Stevens 37 2 0 28 Jan 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 101 155 0 28 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports Henry Watkins Robert J. Gray Adam Julius Y. Mah W. H. Pinaya ... Jorge M. Cardoso Sebastien Ourselin Geraint Rees Rolf Jaeger P. Nachev MedIm 197 1 0 20 Jan 2025
News Without Borders: Domain Adaptation of Multilingual Sentence Embeddings for Cross-lingual News Recommendation Andreea Iana Fabian David Schmidt Goran Glavas Heiko Paulheim 71 3 0 20 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 105 19 0 17 Jan 2025
Natural Language-Assisted Multi-modal Medication Recommendation Jie Tan Yu Rong Kangfei Zhao Tian Bian Tingyang Xu Junzhou Huang Hong Cheng Helen Meng 58 1 0 13 Jan 2025
MEXA-CTP: Mode Experts Cross-Attention for Clinical Trial Outcome Prediction Yiqing Zhang Xiaozhong Liu Fabricio Murai 44 0 0 12 Jan 2025
STAYKATE: Hybrid In-Context Example Selection Combining Representativeness Sampling and Retrieval-based Approach -- A Case Study on Science Domains Chencheng Zhu Kazutaka Shimada Tomoki Taniguchi Tomoko Ohkuma 43 0 0 31 Dec 2024
Controlling for Unobserved Confounding with Large Language Model Classification of Patient Smoking Status Samuel Lee Zach Wood-Doughty CML 50 0 0 05 Nov 2024
TriG-NER: Triplet-Grid Framework for Discontinuous Named Entity Recognition R. Cabral Soyeon Caren Han Areej Alhassan R. Batista-Navarro Goran Nenadic Josiah Poon 36 0 0 04 Nov 2024
Generative AI-Powered Plugin for Robust Federated Learning in Heterogeneous IoT Networks Youngjoon Lee J. Gong Joonhyuk Kang 54 0 0 31 Oct 2024