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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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TextBraTS: Text-Guided Volumetric Brain Tumor Segmentation with Innovative Dataset Development and Fusion Module Exploration Xiaoyu Shi R. Jain Yinhao Li Ruibo Hou Jingliang Cheng J. Bai Guohua Zhao Lanfen Lin R. Xu Yen-Wei Chen 19 0 0 20 Jun 2025
Cohort Discovery: A Survey on LLM-Assisted Clinical Trial Recruitment Shrestha Ghosh Moritz Schneider Carina Reinicke Carsten Eickhoff 20 0 0 18 Jun 2025
CKD-EHR:Clinical Knowledge Distillation for Electronic Health Records Junke Wang H. Ling Li Zhang L. Zhang Fang Wang Yuan Gao Zhi Li 20 0 0 18 Jun 2025
JEBS: A Fine-grained Biomedical Lexical Simplification Task William Xia Ishita Unde Brian D. Ondov Dina Demner-Fushman 14 0 0 15 Jun 2025
Large Language Models for History, Philosophy, and Sociology of Science: Interpretive Uses, Methodological Challenges, and Critical Perspectives Arno Simons Michael Zichert Adrian Wüthrich 17 0 0 13 Jun 2025
ImmunoFOMO: Are Language Models missing what oncologists see? Aman Sinha Bogdan-Valentin Popescu X. Coubez Marianne Clausel Mathieu Constant LM&MA 17 0 0 13 Jun 2025
Instruction Tuning and CoT Prompting for Contextual Medical QA with LLMs Chenqian Le Ziheng Gong Chihang Wang Haowei Ni Panfeng Li Xupeng Chen LM&MA LRM 30 2 0 13 Jun 2025
GeistBERT: Breathing Life into German NLP Raphael Scheible-Schmitt Johann Frei VLM 28 0 0 13 Jun 2025
Enhancing Medical Dialogue Generation through Knowledge Refinement and Dynamic Prompt Adjustment Hongda Sun Jiaren Peng Wenzhong Yang Liang He Bo Du Rui Yan MedIm 117 0 0 12 Jun 2025
Spelling-out is not Straightforward: LLMs' Capability of Tokenization from Token to Characters Tatsuya Hiraoka Kentaro Inui 121 0 0 12 Jun 2025
Benchmarking Foundation Speech and Language Models for Alzheimer's Disease and Related Dementia Detection from Spontaneous Speech Jingyu Li Lingchao Mao Hairong Wang Zhendong Wang Xi Mao Xuelei Sherry Ni 18 0 0 09 Jun 2025
Research Knowledge Graphs: the Shifting Paradigm of Scholarly Information Representation Matthäus Zloch Danilo Dessi Jennifer D’Souza Leyla Jael Castro Benjamin Zapilko ... Brigitte Mathiak M. Stocker Wolfgang Otto Sören Auer Stefan Dietze 10 0 0 08 Jun 2025
MedCite: Can Language Models Generate Verifiable Text for Medicine? Xiao Wang Mengjue Tan Qiao Jin Guangzhi Xiong Yu Hu Aidong Zhang Zhiyong Lu Minjia Zhang 23 0 0 07 Jun 2025
Constrained Entropic Unlearning: A Primal-Dual Framework for Large Language Models Taha Entesari Arman Hatami Rinat Khaziev Anil Ramakrishna Mahyar Fazlyab MU 117 0 0 05 Jun 2025
Mitigating Confounding in Speech-Based Dementia Detection through Weight Masking Zhecheng Sheng Xiruo Ding Brian Hur Changye Li Trevor Cohen Serguei V. S. Pakhomov 25 0 0 05 Jun 2025
Training-free AI for Earth Observation Change Detection using Physics Aware Neuromorphic Networks Stephen Smith Cormac Purcell Zdenka Kuncic 30 0 0 04 Jun 2025
EvidenceOutcomes: a Dataset of Clinical Trial Publications with Clinically Meaningful Outcomes Yiliang Zhou Abigail M. Newbury Gongbo Zhang B. Idnay Hao Liu Chunhua Weng Yifan Peng 21 0 0 03 Jun 2025
Novel Benchmark for NER in the Wastewater and Stormwater Domain Franco Alberto Cardillo Franca Debole Francesca Frontini Mitra Aelami Nanée Chahinian Serge Conrad 39 0 0 02 Jun 2025
Domain Pre-training Impact on Representations César González-Gutiérrez A. Quattoni 25 0 0 30 May 2025
PRISM: A Framework for Producing Interpretable Political Bias Embeddings with Political-Aware Cross-Encoder Yiqun Sun Qiang Huang Anthony K. H. Tung Jun Yu 22 0 0 30 May 2025
Interpretable phenotyping of Heart Failure patients with Dutch discharge letters Vittorio Torri Machteld J. Boonstra Marielle C. van de Veerdonk Deborah N. Kalkman Alicia Uijl Francesca Ieva Ameen Abu-Hanna Folkert W. Asselbergs Iacer Calixto 23 0 0 30 May 2025
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model Adibvafa Fallahpour Andrew Magnuson Purav Gupta Shihao Ma Jack Naimer ... Haonan Duan Omar Ibrahim Hani Goodarzi Chris J. Maddison Bo Wang SyDa AI4CE LRM 17 0 0 29 May 2025
BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain Yunsoo Kim Yusuf Abdulle Honghan Wu LRM 25 0 0 28 May 2025
Natural Language Processing in Support of Evidence-based Medicine: A Scoping Review Zihan Xu Haotian Ma Gongbo Zhang Yihao Ding Chunhua Weng Yifan Peng 17 0 0 28 May 2025
Semi-supervised Clustering Through Representation Learning of Large-scale EHR Data Linshanshan Wang Mengyan Li Zongqi Xia Molei Liu Tianxi Cai 20 0 0 27 May 2025
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation Jong Hak Moon Geon Choi Paloma Rabaey Min Gwan Kim Hyuk Gi Hong ... J. Kim Harshita Sharma Daniel Coelho De Castro Javier Alvarez-Valle Edward Choi LM&MA 45 0 0 27 May 2025
An Explainable Diagnostic Framework for Neurodegenerative Dementias via Reinforcement-Optimized LLM Reasoning Andrew Zamai Nathanael Fijalkow Boris Mansencal Laurent Simon Eloi Navet Pierrick Coupé 54 0 0 26 May 2025
From Generation to Detection: A Multimodal Multi-Task Dataset for Benchmarking Health Misinformation Zhihao Zhang Yiran Zhang Xiyue Zhou Liting Huang Imran Razzak Preslav Nakov Usman Naseem 19 0 0 24 May 2025
A General Knowledge Injection Framework for ICD Coding Xu Zhang Kun Zhang Wenxin Ma Rongsheng Wang Chenxu Wu Yingtai Li S.Kevin Zhou 10 0 0 24 May 2025
PMOA-TTS: Introducing the PubMed Open Access Textual Times Series Corpus Shahriar Noroozizadeh Sayantan Kumar George H. Chen Jeremy C. Weiss 45 0 0 23 May 2025
Nested Named Entity Recognition as Single-Pass Sequence Labeling Alberto Muñoz-Ortiz David Vilares Caio COrro Carlos Gómez-Rodríguez 48 0 0 22 May 2025
FS-DAG: Few Shot Domain Adapting Graph Networks for Visually Rich Document Understanding Amit Agarwal Srikant Panda Kulbhushan Pachauri 65 4 0 22 May 2025
Informatics for Food Processing Gordana Ispirova Michael Sebek G. Menichetti 152 0 0 20 May 2025
Any-to-Any Learning in Computational Pathology via Triplet Multimodal Pretraining Qichen Sun Zhengrui Guo Rui Peng Hao Chen Jinzhuo Wang MedIm 100 0 0 19 May 2025
MA-COIR: Leveraging Semantic Search Index and Generative Models for Ontology-Driven Biomedical Concept Recognition Shanshan Liu Noriki Nishida Rumana Ferdous Munne Narumi Tokunaga Yuki Yamagata Kouji Kozaki Yuji Matsumoto 75 0 0 19 May 2025
Fine-Grained ECG-Text Contrastive Learning via Waveform Understanding Enhancement Haitao Li Che Liu Zhengyao Ding Ziyi Liu Zhengxing Huang 53 1 0 17 May 2025
MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models Xiaomin Li Mingye Gao Yuexing Hao Taoran Li Guangya Wan Zihan Wang Yijun Wang LM&MA ELM AI4MH 139 0 0 16 May 2025
SECRET: Semi-supervised Clinical Trial Document Similarity Search Trisha Das Afrah Shafquat Beigi Mandis Jacob Aptekar Jimeng Sun 55 0 0 16 May 2025
Demystifying AI Agents: The Final Generation of Intelligence Kevin J McNamara Rhea Pritham Marpu 73 0 0 15 May 2025
TrialMatchAI: An End-to-End AI-powered Clinical Trial Recommendation System to Streamline Patient-to-Trial Matching Majd Abdallah Sigve Nakken Mariska Bierkens Johanna Galvis Alexis Groppi ... Rodrigo Dienstmann Remond Fijneman Eivind Hovig Gerrit Meijer Macha Nikolski 49 0 0 13 May 2025
Bridging Large Language Models and Single-Cell Transcriptomics in Dissecting Selective Motor Neuron Vulnerability Douglas Jiang Zilin Dai Luxuan Zhang Qiyi Yu Haoqi Sun Feng Tian 25 0 0 12 May 2025
Chronocept: Instilling a Sense of Time in Machines Krish Goel Sanskar Pandey KS Mahadevan Harsh Kumar Vishesh Khadaria 76 0 0 12 May 2025
Efficient and Reproducible Biomedical Question Answering using Retrieval Augmented Generation Linus Stuhlmann Michael Alexander Saxer Jonathan Fürst RALM 49 0 0 12 May 2025
HAMLET: Healthcare-focused Adaptive Multilingual Learning Embedding-based Topic Modeling Hajar Sakai Sarah Lam 92 0 0 12 May 2025
KDH-MLTC: Knowledge Distillation for Healthcare Multi-Label Text Classification Hajar Sakai Sarah Lam VLM 113 0 0 12 May 2025
CheXLearner: Text-Guided Fine-Grained Representation Learning for Progression Detection Yanjie Wang Junwen Duan Xinyu Li Jianxin Wang MedIm 87 0 0 11 May 2025
CellVerse: Do Large Language Models Really Understand Cell Biology? Fan Zhang Tianyu Liu Zhihong Zhu Yu Wang Haoyu Wang Donghao Zhou Yefeng Zheng Kun Wang X. Wu Pheng-Ann Heng ELM 66 0 0 09 May 2025
HiPerRAG: High-Performance Retrieval Augmented Generation for Scientific Insights Ozan Gokdemir Carlo Siebenschuh Alexander Brace Azton Wells Brian Hsu ... A. Anandkumar Ian Foster R. Stevens V. Vishwanath A. Ramanathan VLM 85 0 0 07 May 2025
CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies Komal Gilani Marlo Verket Christof Peters Michel Dumontier Hans-Peter Brunner-La Rocca V. Urovi 99 0 0 07 May 2025
Knowledge Augmented Complex Problem Solving with Large Language Models: A Survey Da Zheng Lun Du Junwei Su Yuchen Tian Yuqi Zhu Jintian Zhang Lanning Wei Xin Xu Ningyu Zhang LRM 207 1 0 06 May 2025