BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 621 papers shown

Title
Robust Transfer Learning with Pretrained Language Models through Adapters Wenjuan Han Bo Pang Ying Nian Wu 16 54 0 05 Aug 2021
Automatic Detection of COVID-19 Vaccine Misinformation with Graph Link Prediction Maxwell Weinzierl S. Harabagiu 14 29 0 04 Aug 2021
The RareDis corpus: a corpus annotated with rare diseases, their signs and symptoms Claudia Martínez-de Miguel Isabel Segura-Bedmar E. Chacón-Solano S. Guerrero-Aspizua 6 19 0 02 Aug 2021
Pre-train, Prompt, and Predict: A Systematic Survey of Prompting Methods in Natural Language Processing Pengfei Liu Weizhe Yuan Jinlan Fu Zhengbao Jiang Hiroaki Hayashi Graham Neubig VLM SyDa 85 3,858 0 28 Jul 2021
Exceeding the Limits of Visual-Linguistic Multi-Task Learning Cameron R. Wolfe Keld T. Lundgaard VLM 45 2 0 27 Jul 2021
Back-Translated Task Adaptive Pretraining: Improving Accuracy and Robustness on Text Classification Junghoon Lee Jounghee Kim Pilsung Kang VLM 19 5 0 22 Jul 2021
Overview and Insights from the SciVer Shared Task on Scientific Claim Verification David Wadden Kyle Lo 69 11 0 17 Jul 2021
Quantifying Explainability in NLP and Analyzing Algorithms for Performance-Explainability Tradeoff Michael J. Naylor C. French Samantha R. Terker Uday Kamath 44 10 0 12 Jul 2021
Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT Usman Naseem A. Dunn Matloob Khushi Jinman Kim OOD LM&MA AI4MH 24 43 0 09 Jul 2021
Neural Natural Language Processing for Unstructured Data in Electronic Health Records: a Review Irene Z Li Jessica Pan Jeremy Goldwasser Neha Verma Wai Pan Wong ... Matthew Zhang David Chang R. Taylor H. Krumholz Dragomir R. Radev BDL 26 154 0 07 Jul 2021
Language Identification of Hindi-English tweets using code-mixed BERT M. Z. Ansari M. Beg Tanvir Ahmad Mohd Jazib Khan Ghazali Wasim 45 14 0 02 Jul 2021
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports Saahil Jain Ashwin Agrawal A. Saporta Steven QH Truong D. Duong ... Yuhao Zhang M. Lungren A. Ng C. Langlotz Pranav Rajpurkar MedIm 26 201 0 28 Jun 2021
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature Yu-Chiang Frank Wang Jinchao Li Tristan Naumann Chenyan Xiong Hao Cheng ... Yang Qin Eric Horvitz Paul N. Bennett Jianfeng Gao Hoifung Poon OOD 33 13 0 25 Jun 2021
Clinical Named Entity Recognition using Contextualized Token Representations Yichao Zhou C. Ju J. H. Caufield Kevin J. Shih Calvin Yu‐Chian Chen Yizhou Sun Kai-Wei Chang Peipei Ping Wei Wang 48 10 0 23 Jun 2021
Scientific Language Models for Biomedical Knowledge Base Completion: An Empirical Study Rahul Nadkarni David Wadden Iz Beltagy Noah A. Smith Hannaneh Hajishirzi Tom Hope 40 27 0 17 Jun 2021
Classifying vaccine sentiment tweets by modelling domain-specific representation and commonsense knowledge into context-aware attentive GRU Usman Naseem Matloob Khushi Jinman Kim A. Dunn 24 12 0 17 Jun 2021
Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data Haoming Jiang Danqing Zhang Tianyu Cao Bing Yin T. Zhao NoLa 30 44 0 16 Jun 2021
CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark Ningyu Zhang Mosha Chen Zhen Bi Xiaozhuan Liang Lei Li ... Jun Yan Hongying Zan Kunli Zhang Buzhou Tang Qingcai Chen LM&MA ELM 34 179 0 15 Jun 2021
Probing Pre-Trained Language Models for Disease Knowledge Israa Alghanmi Luis Espinosa-Anke Steven Schockaert LM&MA ELM 33 13 0 14 Jun 2021
Pre-Trained Models: Past, Present and Future Xu Han Zhengyan Zhang Ning Ding Yuxian Gu Xiao Liu ... Jie Tang Ji-Rong Wen Jinhui Yuan Wayne Xin Zhao Jun Zhu AIFin MQ AI4MH 58 818 0 14 Jun 2021
EPICURE Ensemble Pretrained Models for Extracting Cancer Mutations from Literature Jiarun Cao E. M. Veen Niels Peek A. Renehan Sophia Ananiadou 8 11 0 11 Jun 2021
Linguistically Informed Masking for Representation Learning in the Patent Domain Sophia Althammer Mark Buckley Sebastian Hofstatter Allan Hanbury 45 11 0 10 Jun 2021
Joint Biomedical Entity and Relation Extraction with Knowledge-Enhanced Collective Inference T. Lai Heng Ji ChengXiang Zhai Quan Hung Tran 37 66 0 27 May 2021
Multi-modal Understanding and Generation for Medical Images and Text via Vision-Language Pre-Training Jong Hak Moon HyunGyung Lee W. Shin Young-Hak Kim Edward Choi MedIm 29 151 0 24 May 2021
A Sequence-to-Set Network for Nested Named Entity Recognition Zeqi Tan Yongliang Shen Shuai Zhang Weiming Lu Yueting Zhuang BDL 16 78 0 19 May 2021
Improving Adverse Drug Event Extraction with SpanBERT on Different Text Typologies Beatrice Portelli Daniele Passabi Edoardo Lenzi G. Serra Enrico Santus Emmanuele Chersoni MedIm 8 13 0 19 May 2021
CoTexT: Multi-task Learning with Code-Text Transformer Long Phan H. Tran Daniel Le Hieu Duy Nguyen J. Anibal Alec Peltekian Yanfang Ye 27 135 0 18 May 2021
Locate and Label: A Two-stage Identifier for Nested Named Entity Recognition Yongliang Shen Xinyin Ma Zeqi Tan Shuai Zhang Wen Wang Weiming Lu 24 175 0 14 May 2021
Cross-Domain Contract Element Extraction with a Bi-directional Feedback Clause-Element Relation Network Zihan Wang Hongye Song Zhaochun Ren Pengjie Ren Zhumin Chen Xiaozhong Liu Hongsong Li Maarten de Rijke AILaw 30 13 0 13 May 2021
Lawformer: A Pre-trained Language Model for Chinese Legal Long Documents Chaojun Xiao Xueyu Hu Zhiyuan Liu Cunchao Tu Maosong Sun AILaw ELM 48 230 0 09 May 2021
Improving Named Entity Recognition by External Context Retrieving and Cooperative Learning Xinyu Wang Yong-jia Jiang Nguyen Bach Tao Wang Zhongqiang Huang Fei Huang Kewei Tu 41 144 0 08 May 2021
Beyond Self-attention: External Attention using Two Linear Layers for Visual Tasks Meng-Hao Guo Zheng-Ning Liu Tai-Jiang Mu Shimin Hu 28 473 0 05 May 2021
Adapting Coreference Resolution for Processing Violent Death Narratives Ankith Uppunda S. Cochran J. Foster Alina Arseniev-Koehler V. Mays Kai-Wei Chang 25 8 0 30 Apr 2021
Improving BERT Model Using Contrastive Learning for Biomedical Relation Extraction P. Su Yifan Peng K. Vijay-Shanker SSL 34 35 0 28 Apr 2021
Claim Detection in Biomedical Twitter Posts Amelie Wuhrl Roman Klinger 43 29 0 23 Apr 2021
Extracting Adverse Drug Events from Clinical Notes D. Mahendran Bridget T. McInnes 32 25 0 21 Apr 2021
ELECTRAMed: a new pre-trained language representation model for biomedical NLP Giacomo Miolo Giulio Mantoan C. Orsenigo 19 24 0 19 Apr 2021
Memorisation versus Generalisation in Pre-trained Language Models Michael Tänzer Sebastian Ruder Marek Rei 94 50 0 16 Apr 2021
Membership Inference Attack Susceptibility of Clinical Language Models Abhyuday N. Jagannatha Bhanu Pratap Singh Rawat Hong-ye Yu MIACV 29 62 0 16 Apr 2021
AMMU : A Survey of Transformer-based Biomedical Pretrained Language Models Katikapalli Subramanyam Kalyan A. Rajasekharan S. Sangeetha LM&MA MedIm 31 164 0 16 Apr 2021
Temporal Adaptation of BERT and Performance on Downstream Document Classification: Insights from Social Media Paul Röttger J. Pierrehumbert 28 64 0 16 Apr 2021
Sequence tagging for biomedical extractive question answering Wonjin Yoon Richard Jackson Aron Lagerberg Jaewoo Kang MedIm 18 26 0 15 Apr 2021
Semantic maps and metrics for science Semantic maps and metrics for science using deep transformer encoders Brendan Chambers James A. Evans MedIm 13 0 0 13 Apr 2021
DATE: Detecting Anomalies in Text via Self-Supervision of Transformers Andrei Manolache Florin Brad Elena Burceanu UQCV 43 33 0 12 Apr 2021
BBAEG: Towards BERT-based Biomedical Adversarial Example Generation for Text Classification Ishani Mondal AAML SILM MedIm 19 14 0 05 Apr 2021
IITK@LCP at SemEval 2021 Task 1: Classification for Lexical Complexity Regression Task Neil Rajiv Shirude Sagnik Mukherjee Tushar Shandhilya Ananta Mukherjee Ashutosh Modi 18 4 0 02 Apr 2021
Deep Neural Approaches to Relation Triplets Extraction: A Comprehensive Survey Tapas Nayak Navonil Majumder Pawan Goyal Soujanya Poria ViT 16 49 0 31 Mar 2021
Self-supervised Image-text Pre-training With Mixed Data In Chest X-rays Xiaosong Wang Ziyue Xu Leo K. Tam Dong Yang Daguang Xu ViT MedIm 25 23 0 30 Mar 2021
Retraining DistilBERT for a Voice Shopping Assistant by Using Universal Dependencies P. Jayarao Arpit Sharma 21 2 0 29 Mar 2021
TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding Biplob Biswas Thai-Hoang Pham Ping Zhang 21 29 0 28 Mar 2021