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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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An Automated LLM-based Pipeline for Asset-Level Database Creation to Assess Deforestation Impact Avanija Menon Ovidiu Serban 64 0 0 05 May 2025
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Knowledge-augmented Pre-trained Language Models for Biomedical Relation Extraction Mario Sanger Ulf Leser 91 0 0 01 May 2025
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Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 148 3 0 29 Apr 2025
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Hallucinations and Key Information Extraction in Medical Texts: A Comprehensive Assessment of Open-Source Large Language Models Anindya Bijoy Das Shibbir Ahmed Shahnewaz Karim Sakib HILM LM&MA 109 1 0 27 Apr 2025
Advancing Scientific Text Classification: Fine-Tuned Models with Dataset Expansion and Hard-Voting Z. R. K. Rostam Gábor Kertész 61 0 0 26 Apr 2025
Towards Harnessing the Collaborative Power of Large and Small Models for Domain Tasks Yang Liu Bingjie Yan Tianyuan Zou Jianqing Zhang Zixuan Gu ... Jiajian Li Xiaozhou Ye Ye Ouyang Qiang Yang Yanzhe Zhang ALM 453 1 0 24 Apr 2025
HMI: Hierarchical Knowledge Management for Efficient Multi-Tenant Inference in Pretrained Language Models Junxuan Zhang Jiadong Wang Haoyang Li Lidan Shou Ke Chen Gang Chen Qin Xie Guiming Xie Xuejian Gong 44 0 0 24 Apr 2025
PatientDx: Merging Large Language Models for Protecting Data-Privacy in Healthcare José G. Moreno Jesus Lovon M'Rick Robin-Charlet Christine Damase-Michel L. Tamine MoMe LM&MA 132 0 0 24 Apr 2025
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A Scoping Review of Natural Language Processing in Addressing Medically Inaccurate Information: Errors, Misinformation, and Hallucination Zhaoyi Sun Wen-wai Yim Özlem Uzuner Fei Xia Meliha Yetisgen 85 0 0 16 Apr 2025
Streamlining Biomedical Research with Specialized LLMs Linqing Chen Weilei Wang Yubin Xia Wentao Wu Peng Xu ... Lisha Zhang Fu Bian Zhongkai Ye Lidong Pei Changyang Tu 62 1 0 15 Apr 2025
Can We Edit LLMs for Long-Tail Biomedical Knowledge? Xinhao Yi Jake Lever Kevin Bryson Zaiqiao Meng KELM 74 0 0 14 Apr 2025
Reduction of Supervision for Biomedical Knowledge Discovery Christos Theodoropoulos Andrei Catalin Coman James Henderson Marie-Francine Moens 48 0 0 13 Apr 2025
Langformers: Unified NLP Pipelines for Language Models Rabindra Lamsal M. Read S. Karunasekera KELM AI4CE 41 0 0 12 Apr 2025
Application of Contrastive Learning on ECG Data: Evaluating Performance in Japanese and Classification with Around 100 Labels Junichiro Takahashi JingChuan Guan Masataka Sato Kaito Baba Kazuto Haruguchi Daichi Nagashima Satoshi Kodera Norihiko Takeda 69 0 0 12 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 73 0 0 10 Apr 2025
DynClean: Training Dynamics-based Label Cleaning for Distantly-Supervised Named Entity Recognition Qi Zhang Huitong Pan Zhijia Chen Longin Jan Latecki Cornelia Caragea Eduard Constantin Dragut 101 0 0 06 Apr 2025
Clinical ModernBERT: An efficient and long context encoder for biomedical text Simon A. Lee Anthony Wu Jeffrey N. Chiang MedIm 95 6 0 04 Apr 2025
Interpretable Multimodal Learning for Tumor Protein-Metal Binding: Progress, Challenges, and Perspectives Xiaokun Liu Sayedmohammadreza Rastegari Yijun Huang Sxe Chang Cheong Weikang Liu ... Sina Tabakhi Xianyuan Liu Zheqing Zhu Wei Sang Haiping Lu 84 1 0 04 Apr 2025
Structured Extraction of Process Structure Properties Relationships in Materials Science Amit K Verma Zhisong Zhang Junwon Seo Robin Kuo Runbo Jiang Emma Strubell Anthony Rollett 78 0 0 04 Apr 2025
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Do LLMs Surpass Encoders for Biomedical NER? Motasem S Obeidat Md Sultan al Nahian R. Kavuluru 75 0 0 01 Apr 2025
GLiNER-BioMed: A Suite of Efficient Models for Open Biomedical Named Entity Recognition Anthony Yazdani Ihor Stepanov Douglas Teodoro VLM AI4CE 107 0 0 01 Apr 2025
WHERE and WHICH: Iterative Debate for Biomedical Synthetic Data Augmentation Zhengyi Zhao Shubo Zhang Bin Liang Binyang Li Kam-Fai Wong SyDa 83 0 0 31 Mar 2025
Text Chunking for Document Classification for Urban System Management using Large Language Models Joshua Rodriguez Om Sanan Guillermo Vizarreta-Luna Steven A. Conrad 91 0 0 31 Mar 2025
Comparing representations of long clinical texts for the task of patient note-identification Safa Alsaidi Marc Vincent O. Boyer Nicolas Garcelon Miguel Couceiro Adrien Coulet 66 0 0 31 Mar 2025
BiPVL-Seg: Bidirectional Progressive Vision-Language Fusion with Global-Local Alignment for Medical Image Segmentation Rafi Ibn Sultan Hui Zhu Chengyin Li Dongxiao Zhu 94 0 0 30 Mar 2025
Prediction of 30-day hospital readmission with clinical notes and EHR information Tiago Almeida Plinio Moreno Catarina Barata 69 0 0 29 Mar 2025
Beyond Vanilla Fine-Tuning: Leveraging Multistage, Multilingual, and Domain-Specific Methods for Low-Resource Machine Translation Sarubi Thillainathan Songchen Yuan E. Lee Sanath Jayasena Surangika Ranathunga 95 0 0 28 Mar 2025
Fine-Tuning LLMs on Small Medical Datasets: Text Classification and Normalization Effectiveness on Cardiology reports and Discharge records Noah Losch Lucas Plagwitz Antonius Büscher Julian Varghese LM&MA AI4MH 59 0 0 27 Mar 2025
ProtoBERT-LoRA: Parameter-Efficient Prototypical Finetuning for Immunotherapy Study Identification Shijia Zhang Xiyu Ding Kai Ding Jacob Zhang Kevin Galinsky Mengrui Wang Ryan P. Mayers Zheyu Wang Hadi Kharrazi 102 0 0 26 Mar 2025
AfroXLMR-Social: Adapting Pre-trained Language Models for African Languages Social Media Text Tadesse Destaw Belay Israel Abebe Azime Ibrahim Said Ahmad David Ifeoluwa Adelani Idris Abdulmumin Abinew Ali Ayele Shamsuddeen Hassan Muhammad Seid Muhie Yimam 120 0 0 24 Mar 2025
Relation Extraction with Instance-Adapted Predicate Descriptions Yuhang Jiang Ramakanth Kavuluru 131 0 0 22 Mar 2025
KL3M Tokenizers: A Family of Domain-Specific and Character-Level Tokenizers for Legal, Financial, and Preprocessing Applications M. Bommarito Daniel Martin Katz Jillian Bommarito 82 1 0 21 Mar 2025
Beyond Negation Detection: Comprehensive Assertion Detection Models for Clinical NLP Veysel Kocaman Yigit Gul M. Aytug Kaya H. Haq Mehmet Butgul Cabir Celik D. Talby MedIm 68 0 0 21 Mar 2025
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Deep Contrastive Unlearning for Language Models Estrid He Tabinda Sarwar Ibrahim Khalil X. Yi Ke Wang MU 91 1 0 19 Mar 2025
Striving for Simplicity: Simple Yet Effective Prior-Aware Pseudo-Labeling for Semi-Supervised Ultrasound Image Segmentation Yaxiong Chen Yujie Wang Zixuan Zheng Jingliang Hu Yilei Shi Shengwu Xiong Xiao Xiang Zhu Lichao Mou 148 1 0 18 Mar 2025
RAGO: Systematic Performance Optimization for Retrieval-Augmented Generation Serving Wenqi Jiang Suvinay Subramanian Cat Graves Gustavo Alonso Amir Yazdanbakhsh Vidushi Dadu 132 4 0 18 Mar 2025
CARE: A QLoRA-Fine Tuned Multi-Domain Chatbot With Fast Learning On Minimal Hardware Ankit Dutta Nabarup Ghosh Ankush Chatterjee 85 0 0 18 Mar 2025
Domain Adaptation for Japanese Sentence Embeddings with Contrastive Learning based on Synthetic Sentence Generation Zihao Chen H. Handa Miho Ohsaki Kimiaki Shirahama 102 0 0 12 Mar 2025
Multi-Modal Foundation Models for Computational Pathology: A Survey Dong Li Guihong Wan Xintao Wu Xinyu Wu Xiaohui Chen Yi He Christine G. Lian Peter K. Sorger Yevgeniy R. Semenov Chen Zhao MedIm 123 0 0 12 Mar 2025
Towards Scalable and Cross-Lingual Specialist Language Models for Oncology Morteza Rohanian Tarun Mehra Nicola Miglino Farhad Nooralahzadeh Michael Krauthammer Andreas Wicki LM&MA 49 0 0 11 Mar 2025