BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 611 papers shown

Title
COVID-19 therapy target discovery with context-aware literature mining Matej Martinc Blaž Škrlj S. Pirkmajer Nada Lavrac B. Cestnik Martin Marzidovsek Senja Pollak 9 9 0 30 Jul 2020
Robust Prediction of Punctuation and Truecasing for Medical ASR Monica Sunkara S. Ronanki Kalpit Dixit S. Bodapati Katrin Kirchhoff 14 33 0 04 Jul 2020
Transferability of Natural Language Inference to Biomedical Question Answering Minbyul Jeong Mujeen Sung Gangwoo Kim Donghyeon Kim Wonjin Yoon J. Yoo Jaewoo Kang 19 38 0 01 Jul 2020
Classification of cancer pathology reports: a large-scale comparative study S. Martina L. Ventura P. Frasconi 24 11 0 29 Jun 2020
Answering Questions on COVID-19 in Real-Time Jinhyuk Lee Sean S. Yi Minbyul Jeong Mujeen Sung Wonjin Yoon Yonghwa Choi Miyoung Ko Jaewoo Kang 21 43 0 29 Jun 2020
A Deep Learning Pipeline for Patient Diagnosis Prediction Using Electronic Health Records Leopold Franz Yash Raj Shrestha B. Paudel OOD 26 25 0 23 Jun 2020
Students Need More Attention: BERT-based AttentionModel for Small Data with Application to AutomaticPatient Message Triage Shijing Si Rui Wang Jedrek Wosik Hao Zhang D. Dov Guoyin Wang Ricardo Henao Lawrence Carin 33 26 0 22 Jun 2020
A Qualitative Evaluation of Language Models on Automatic Question-Answering for COVID-19 David Oniani Yanshan Wang 24 32 0 19 Jun 2020
Results of the seventh edition of the BioASQ Challenge A. Nentidis K. Bougiatiotis Anastasia Krithara George Giannakopoulos 24 62 0 16 Jun 2020
PERL: Pivot-based Domain Adaptation for Pre-trained Deep Contextualized Embedding Models Eyal Ben-David Carmel Rabinovitz Roi Reichart SSL 58 61 0 16 Jun 2020
Document Classification for COVID-19 Literature Bernal Jiménez Gutiérrez Juncheng Zeng Dongdong Zhang Ping Zhang Yu-Chuan Su OOD 19 32 0 15 Jun 2020
FinBERT: A Pretrained Language Model for Financial Communications Yi Yang Mark Christopher Siy Uy Allen H Huang AIFin AI4CE 28 231 0 15 Jun 2020
Auxiliary Signal-Guided Knowledge Encoder-Decoder for Medical Report Generation Mingjie Li Fuyu Wang Xiaojun Chang Xiaodan Liang MedIm 34 101 0 06 Jun 2020
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature Chaoran Cheng Fei Tan Zhi Wei 23 7 0 05 Jun 2020
CausaLM: Causal Model Explanation Through Counterfactual Language Models Amir Feder Nadav Oved Uri Shalit Roi Reichart CML LRM 44 157 0 27 May 2020
Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction L. Rasmy Yang Xiang Z. Xie Cui Tao Degui Zhi AI4MH LM&MA 24 657 0 22 May 2020
BERTweet: A pre-trained language model for English Tweets Dat Quoc Nguyen Thanh Tien Vu A. Nguyen VLM 34 901 0 20 May 2020
COVID-Twitter-BERT: A Natural Language Processing Model to Analyse COVID-19 Content on Twitter Martin Müller M. Salathé P. Kummervold VLM MedIm AI4MH 35 355 0 15 May 2020
Entity-Enriched Neural Models for Clinical Question Answering Bhanu Pratap Singh Rawat W. Weng So Yeon Min Preethi Raghavan Peter Szolovits 26 18 0 13 May 2020
Detecting Adverse Drug Reactions from Twitter through Domain-Specific Preprocessing and BERT Ensembling Amy Breden L. Moore 31 13 0 11 May 2020
Comparative Analysis of Text Classification Approaches in Electronic Health Records Aurelie Mascio Z. Kraljevic D. Bean Richard J. B. Dobson Robert Stewart R. Bendayan A. Roberts 26 46 0 08 May 2020
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining Yifan Peng Qingyu Chen Zhiyong Lu 8 112 0 06 May 2020
CAiRE-COVID: A Question Answering and Query-focused Multi-Document Summarization System for COVID-19 Scholarly Information Management Dan Su Yan Xu Tiezheng Yu Farhad Bin Siddique Elham J. Barezi Pascale Fung RALM 19 31 0 04 May 2020
Biomedical Entity Representations with Synonym Marginalization Mujeen Sung Hwisang Jeon Jinhyuk Lee Jaewoo Kang 11 128 0 01 May 2020
Zero-shot Neural Passage Retrieval via Domain-targeted Synthetic Question Generation Ji Ma I. Korotkov Yinfei Yang Keith B. Hall Ryan T. McDonald RALM 25 32 0 29 Apr 2020
QURIOUS: Question Generation Pretraining for Text Generation Shashi Narayan Gonçalo Simães Ji Ma Hannah Craighead Ryan T. McDonald 37 15 0 23 Apr 2020
Train No Evil: Selective Masking for Task-Guided Pre-Training Yuxian Gu Zhengyan Zhang Xiaozhi Wang Zhiyuan Liu Maosong Sun 32 59 0 21 Apr 2020
Augmented Curation of Unstructured Clinical Notes from a Massive EHR System Reveals Specific Phenotypic Signature of Impending COVID-19 Diagnosis F. Shweta K. Murugadoss S. Awasthi A. Venkatakrishnan Arjun Puranik ... G. Gores A. Williams J. Halamka V. Soundararajan A. Badley 13 26 0 17 Apr 2020
Calibrating Structured Output Predictors for Natural Language Processing Abhyuday N. Jagannatha Hong-ye Yu 22 28 0 09 Apr 2020
Continual Domain-Tuning for Pretrained Language Models Subendhu Rongali Abhyuday N. Jagannatha Bhanu Pratap Singh Rawat Hong-ye Yu CLL KELM 14 7 0 05 Apr 2020
Deep Entity Matching with Pre-Trained Language Models Yuliang Li Jinfeng Li Yoshihiko Suhara A. Doan W. Tan VLM 28 373 0 01 Apr 2020
Named Entities in Medical Case Reports: Corpus and Experiments Sarah Schulz Jurica vSeva Samuel Rodriguez Malte Ostendorff Georg Rehm 13 9 0 29 Mar 2020
A Survey of Deep Learning for Scientific Discovery M. Raghu Erica Schmidt OOD AI4CE 42 120 0 26 Mar 2020
Pre-trained Models for Natural Language Processing: A Survey Xipeng Qiu Tianxiang Sun Yige Xu Yunfan Shao Ning Dai Xuanjing Huang LM&MA VLM 246 1,454 0 18 Mar 2020
Investigating Entity Knowledge in BERT with Simple Neural End-To-End Entity Linking Samuel Broscheit OCL 30 120 0 11 Mar 2020
Med7: a transferable clinical natural language processing model for electronic health records Andrey Kormilitzin N. Vaci Qiang Liu A. Nevado-Holgado 22 115 0 03 Mar 2020
Federated pretraining and fine tuning of BERT using clinical notes from multiple silos Dianbo Liu Timothy A. Miller AI4MH 38 34 0 20 Feb 2020
The Utility of General Domain Transfer Learning for Medical Language Tasks D. Ranti Katie Hanss Shan Zhao Varun Arvind J. Titano A. Costa Eric Oermann LM&MA MedIm 6 7 0 16 Feb 2020
Explaining Relationships Between Scientific Documents Kelvin Luu Xinyi Wu Rik Koncel-Kedziorski Kyle Lo Isabel Cachola Noah A. Smith 41 48 0 02 Feb 2020
AutoDiscern: Rating the Quality of Online Health Information with Hierarchical Encoder Attention-based Neural Networks Laura Kinkead Ahmed Allam Michael Krauthammer 25 19 0 30 Dec 2019
Multilingual is not enough: BERT for Finnish Antti Virtanen Jenna Kanerva Rami Ilo Jouni Luoma Juhani Luotolahti T. Salakoski Filip Ginter S. Pyysalo 36 277 0 15 Dec 2019
Evaluating robustness of language models for chief complaint extraction from patient-generated text Ilya Valmianski Caleb Goodwin Ian M. Finn Naqi Khan D. Zisook 32 6 0 15 Nov 2019
Leveraging Dependency Forest for Neural Medical Relation Extraction Linfeng Song Yue Zhang D. Gildea Mo Yu Zhiguo Wang Jinsong Su Jinsong Su MedIm 32 33 0 11 Nov 2019
Knowledge Guided Named Entity Recognition for BioMedical Text Pratyay Banerjee Kuntal Kumar Pal M. Devarakonda Chitta Baral 24 0 0 10 Nov 2019
Deep Bidirectional Transformers for Relation Extraction without Supervision Yannis Papanikolaou Ian Roberts Andrea Pierleoni ViT 17 21 0 01 Nov 2019
Keyphrase Extraction from Scholarly Articles as Sequence Labeling using Contextualized Embeddings Dhruva Sahrawat Debanjan Mahata Mayank Kulkarni Haimin Zhang Rakesh Gosangi Amanda Stent Agniv Sharma Yaman Kumar Singla R. Shah Roger Zimmermann 14 30 0 19 Oct 2019
On the use of BERT for Neural Machine Translation S. Clinchant K. Jung Vassilina Nikoulina 27 89 0 27 Sep 2019
Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture Ashok Thillaisundaram Theodosia Togia 24 17 0 26 Sep 2019
Does BERT Make Any Sense? Interpretable Word Sense Disambiguation with Contextualized Embeddings Gregor Wiedemann Steffen Remus Avi Chawla Chris Biemann 27 174 0 23 Sep 2019
Representation Learning for Electronic Health Records W. Weng Peter Szolovits 36 19 0 19 Sep 2019