BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 611 papers shown

Title
How Useful is Continued Pre-Training for Generative Unsupervised Domain Adaptation? Rheeya Uppaal Yixuan Li Junjie Hu 40 4 0 31 Jan 2024
Credit Risk Meets Large Language Models: Building a Risk Indicator from Loan Descriptions in P2P Lending Mario Sanz-Guerrero Javier Arroyo 36 4 0 29 Jan 2024
Fine-tuning Strategies for Domain Specific Question Answering under Low Annotation Budget Constraints Kunpeng Guo Dennis Diefenbach Antoine Gourru Christophe Gravier 33 0 0 17 Jan 2024
Developing ChatGPT for Biology and Medicine: A Complete Review of Biomedical Question Answering Qing Li Lei Li Yu Li LM&MA AI4MH 43 6 0 15 Jan 2024
Zero-shot Generative Large Language Models for Systematic Review Screening Automation Shuai Wang Harrisen Scells Shengyao Zhuang Martin Potthast Bevan Koopman Guido Zuccon 38 13 0 12 Jan 2024
One Model to Rule them All: Towards Universal Segmentation for Medical Images with Text Prompts Ziheng Zhao Yao Zhang Chaoyi Wu Xiaoman Zhang Ya Zhang Yanfeng Wang Weidi Xie VLM MedIm 35 37 0 28 Dec 2023
Robust Knowledge Extraction from Large Language Models using Social Choice Theory Nico Potyka Yuqicheng Zhu Yunjie He Evgeny Kharlamov Steffen Staab 32 3 0 22 Dec 2023
Collaborative Synthesis of Patient Records through Multi-Visit Health State Inference Hongda Sun Hongzhan Lin Rui Yan SyDa 32 2 0 22 Dec 2023
UniDCP: Unifying Multiple Medical Vision-language Tasks via Dynamic Cross-modal Learnable Prompts Chenlu Zhan Yufei Zhang Yu Lin Gaoang Wang Hongwei Wang VLM MedIm 42 5 0 18 Dec 2023
Labrador: Exploring the Limits of Masked Language Modeling for Laboratory Data David R. Bellamy Bhawesh Kumar Cindy Wang Andrew L. Beam MedIm 36 3 0 09 Dec 2023
Gene-MOE: A sparsely gated prognosis and classification framework exploiting pan-cancer genomic information Xiangyu Meng Xue Li Qing Yang Huanhuan Dai Lian Qiao Hongzhen Ding Long Hao Xun Wang 16 0 0 29 Nov 2023
De-identification of clinical free text using natural language processing: A systematic review of current approaches Aleksandar Kovacevic Bojana Bašaragin Nikola Milosevic Goran Nenadic OOD 31 17 0 28 Nov 2023
nach0: Multimodal Natural and Chemical Languages Foundation Model M. Livne Z. Miftahutdinov E. Tutubalina Maksim Kuznetsov Daniil Polykovskiy ... Aastha Jhunjhunwala Anthony Costa Alex Aliper Alán Aspuru-Guzik Alex Zhavoronkov AI4CE 27 13 0 21 Nov 2023
German FinBERT: A German Pre-trained Language Model Moritz Scherrmann 38 0 0 15 Nov 2023
PolyIE: A Dataset of Information Extraction from Polymer Material Scientific Literature Jerry Junyang Cheung Yuchen Zhuang Yinghao Li Pranav Shetty Wantian Zhao Sanjeev Grampurohit R. Ramprasad Chao Zhang AI4CE 14 11 0 13 Nov 2023
Automatic Report Generation for Histopathology images using pre-trained Vision Transformers S. Sengupta Donald E. Brown VLM MedIm ViT 26 9 0 10 Nov 2023
Labor Space: A Unifying Representation of the Labor Market via Large Language Models Seongwoon Kim Yong-Yeol Ahn Jaehyuk Park 19 1 0 09 Nov 2023
Evaluating multiple large language models in pediatric ophthalmology J. Holmes Rui Peng Yiwei Li Jinyu Hu Zheng Liu ... Wei Liu Hong Wei Jie Zou Tianming Liu Yi Shao AI4Ed ELM LM&MA 24 0 0 07 Nov 2023
Hierarchical Classification System for Breast Cancer Specimen Report (HCSBC) -- an end-to-end model for characterizing severity and diagnosis Thiago Santos Harish Kamath Christopher R. McAdams Mary S. Newell Marina B. Mosunjac ... Geoffrey H. Smith Constance Lehman J. Gichoya Imon Banerjee Hari M. Trivedi 32 0 0 02 Nov 2023
Better with Less: A Data-Active Perspective on Pre-Training Graph Neural Networks Jiarong Xu Renhong Huang Xin Jiang Yuxuan Cao Carl Yang Chunping Wang Yang Yang AI4CE 44 14 0 02 Nov 2023
AdaSent: Efficient Domain-Adapted Sentence Embeddings for Few-Shot Classification Yongxin Huang Kexin Wang Sourav Dutta Raj Nath Patel Goran Glavaš Iryna Gurevych VLM 25 4 0 01 Nov 2023
Sentence Bag Graph Formulation for Biomedical Distant Supervision Relation Extraction Hao Zhang Yang Liu Xiaoyan Liu Tianming Liang Gaurav Sharma Liang Xue Maozu Guo 35 1 0 29 Oct 2023
CLIFT: Analysing Natural Distribution Shift on Question Answering Models in Clinical Domain Ankit Pal 19 2 0 19 Oct 2023
Data Augmentations for Improved (Large) Language Model Generalization Amir Feder Yoav Wald Claudia Shi Suchi Saria David M. Blei OOD CML 34 7 0 19 Oct 2023
Large Models for Time Series and Spatio-Temporal Data: A Survey and Outlook Ming Jin Qingsong Wen Keli Zhang Chaoli Zhang Siqiao Xue ... Shirui Pan Vincent S. Tseng Yu Zheng Lei Chen Hui Xiong AI4TS SyDa 42 118 0 16 Oct 2023
Surveying the Landscape of Text Summarization with Deep Learning: A Comprehensive Review Guanghua Wang Weili Wu AI4TS AILaw 40 3 0 13 Oct 2023
A Recent Survey of Heterogeneous Transfer Learning Runxue Bao Yiming Sun Yuhe Gao Jindong Wang Qiang Yang Zhi-Hong Mao Ye Ye 30 4 0 12 Oct 2023
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis Ece Ozkan Xavier Boix OOD 28 0 0 10 Oct 2023
Using Weak Supervision and Data Augmentation in Question Answering Chumki Basu Binyuan Hui Allen McIntosh Wei Wang J. Wullert OOD 52 0 0 28 Sep 2023
Foundation Metrics for Evaluating Effectiveness of Healthcare Conversations Powered by Generative AI Mahyar Abbasian Elahe Khatibi Iman Azimi David Oniani Zahra Shakeri Hossein Abad ... Bryant Lin Olivier Gevaert Li-Jia Li Ramesh C. Jain Amir M. Rahmani LM&MA ELM AI4MH 45 66 0 21 Sep 2023
Information Flow in Graph Neural Networks: A Clinical Triage Use Case Víctor Valls Mykhaylo Zayats Alessandra Pascale 27 1 0 12 Sep 2023
Knowledge-tuning Large Language Models with Structured Medical Knowledge Bases for Reliable Response Generation in Chinese Hao Wang Sendong Zhao Zewen Qiang Zijian Li Nuwa Xi ... Haoqiang Guo Yuhan Chen Haoming Xu Bing Qin Ting Liu LM&MA AI4MH 34 17 0 08 Sep 2023
Aligning Large Language Models for Clinical Tasks Supun Manathunga Isuru Hettigoda LM&MA ELM AI4MH 36 10 0 06 Sep 2023
Improving Image Classification of Knee Radiographs: An Automated Image Labeling Approach Jikai Zhang Carlos Santos Christine Park Maciej A. Mazurowski R. Colglazier 29 2 0 06 Sep 2023
Multimodal Foundation Models For Echocardiogram Interpretation M. Christensen Milos Vukadinovic N. Yuan David Ouyang MedIm 29 7 0 29 Aug 2023
Unlocking Hardware Security Assurance: The Potential of LLMs Xingyu Meng Amisha Srivastava Ayush Arunachalam Avik Ray Pedro Henrique Silva Rafail Psiakis Yiorgos Makris K. Basu 30 29 0 21 Aug 2023
Learning Representations on Logs for AIOps Pranjal Gupta Harshit Kumar Debanjana Kar Karan Bhukar Pooja Aggarwal P. Mohapatra 45 11 0 18 Aug 2023
Finding Stakeholder-Material Information from 10-K Reports using Fine-Tuned BERT and LSTM Models V. Z. Chen 24 0 0 15 Aug 2023
MC-DRE: Multi-Aspect Cross Integration for Drug Event/Entity Extraction Jie Yang S. Han Siqu Long Josiah Poon Goran Nenadic 45 0 0 12 Aug 2023
Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension Leilei Su Jian Chen Yifan Peng Cong Sun 34 2 0 12 Aug 2023
Local Large Language Models for Complex Structured Medical Tasks V. Bumgardner Aaron D. Mullen Samuel E. Armstrong Caylin D. Hickey Jeffrey A. Talbert 36 5 0 03 Aug 2023
BioBERT Based SNP-traits Associations Extraction from Biomedical Literature Mohammad Dehghani Behrouz Bokharaeian Zahra Yazdanparast 16 1 0 03 Aug 2023
Med-Flamingo: a Multimodal Medical Few-shot Learner Michael Moor Qian Huang Shirley Wu Michihiro Yasunaga C. Zakka Yashodhara Dalmia E. Reis Pranav Rajpurkar J. Leskovec LM&MA MedIm 27 233 0 27 Jul 2023
Prot2Text: Multimodal Protein's Function Generation with GNNs and Transformers Hadi Abdine Michail Chatzianastasis Costas Bouyioukos Michalis Vazirgiannis 30 40 0 25 Jul 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Do not Mask Randomly: Effective Domain-adaptive Pre-training by Masking In-domain Keywords Shahriar Golchin Mihai Surdeanu N. Tavabi A. Kiapour 23 4 0 14 Jul 2023
DeepOnto: A Python Package for Ontology Engineering with Deep Learning Yuan He Jiaoyan Chen Hang Dong Ian Horrocks Carlo Allocca Taehun Kim B. Sapkota 29 23 0 06 Jul 2023
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain Aryo Pradipta Gema Pasquale Minervini Luke Daines Tom Hope Beatrice Alex LM&MA ALM 36 40 0 06 Jul 2023
DMNER: Biomedical Entity Recognition by Detection and Matching Junyi Bian Rongze Jiang W. Zhai Tianyang Huang Hong Zhou Shanfeng Zhu 32 2 0 27 Jun 2023
Exploring New Frontiers in Agricultural NLP: Investigating the Potential of Large Language Models for Food Applications Saed Rezayi Zheng Liu Zihao Wu Chandra Dhakal Bao Ge ... Gengchen Mai Ninghao Liu Chen Zhen Tianming Liu Sheng Li 28 32 0 20 Jun 2023