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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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LSC-Eval: A General Framework to Evaluate Methods for Assessing Dimensions of Lexical Semantic Change Using LLM-Generated Synthetic Data Naomi Baes Raphael Merx Nick Haslam Ekaterina Vylomova Haim Dubossarsky 92 0 0 11 Mar 2025
Enhanced Multi-Tuple Extraction for Alloys: Integrating Pointer Networks and Augmented Attention Mengzhe Hei Zhouran Zhang Qingbao Liu Yan Pan Xiang Zhao Yongqian Peng Yicong Ye Xin Zhang Shuxin Bai 73 1 0 10 Mar 2025
ExKG-LLM: Leveraging Large Language Models for Automated Expansion of Cognitive Neuroscience Knowledge Graphs Ali Sarabadani Kheirolah Rahsepar Fard Hamid Dalvand 95 0 0 09 Mar 2025
An Empirical Study of Causal Relation Extraction Transfer: Design and Data Sydney Anuyah Jack Vanschaik Palak Jain Sawyer Lehman Sunandan Chakraborty 78 0 0 08 Mar 2025
MARRO: Multi-headed Attention for Rhetorical Role Labeling in Legal Documents Purbid Bambroo Subinay Adhikary Paheli Bhattacharya Abhijnan Chakraborty Saptarshi Ghosh Kripabandhu Ghosh AILaw 119 1 0 08 Mar 2025
Leveraging Semantic Type Dependencies for Clinical Named Entity Recognition Linh Le Guido Zuccon Gianluca Demartini Genghong Zhao Xia Zhang 116 1 0 07 Mar 2025
IFIR: A Comprehensive Benchmark for Evaluating Instruction-Following in Expert-Domain Information Retrieval Tingyu Song Guo Gan Mingsheng Shang Yilun Zhao VLM 99 2 0 06 Mar 2025
BPQA Dataset: Evaluating How Well Language Models Leverage Blood Pressures to Answer Biomedical Questions Chi Hang Ruiqi Deng L. Jiang Zihao Yang Anton Alyakin Daniel Alber E. Oermann AI4MH LM&MA 89 0 0 06 Mar 2025
Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions Yichong Zhao Susumu Goto 115 0 0 05 Mar 2025
OFF-CLIP: Improving Normal Detection Confidence in Radiology CLIP with Simple Off-Diagonal Term Auto-Adjustment Junhyun Park Chanyu Moon Donghwan Lee Kyungsu Kim Minho Hwang VLM MedIm 136 0 0 03 Mar 2025
Dementia Insights: A Context-Based MultiModal Approach Sahar Sinene Mehdoui Abdelhamid Bouzid Daniel Sierra-Sosa Adel Elmaghraby 100 0 0 03 Mar 2025
Distilled Prompt Learning for Incomplete Multimodal Survival Prediction Yingxue Xu Fengtao Zhou Chenyu Zhao Yihui Wang Can Yang Hao Chen VLM OffRL 155 0 0 03 Mar 2025
RuCCoD: Towards Automated ICD Coding in Russian A. Nesterov Andrey Sakhovskiy Ivan Sviridov Airat Valiev Vladimir Makharev Petr Anokhin Galina Zubkova E. Tutubalina 144 0 0 28 Feb 2025
Contextualizing biological perturbation experiments through language Menghua Wu Russell Littman Jacob Levine Lin Qiu Tommaso Biancalani David Richmond Jan-Christian Huetter 71 0 0 28 Feb 2025
Improving Representation Learning of Complex Critical Care Data with ICU-BERT Ricardo Santos André V. Carreiro Xi Peng Hugo Gamboa Holger Fröhlich OOD 135 0 0 26 Feb 2025
Compressing Language Models for Specialized Domains Miles Williams G. Chrysostomou Vitor Jeronymo Nikolaos Aletras MQ 118 0 0 25 Feb 2025
Citrus: Leveraging Expert Cognitive Pathways in a Medical Language Model for Advanced Medical Decision Support G. Wang Minyu Gao Shuai Yang Ya Zhang Lizhi He ... Yexuan Zhang Wanyue Li Lu Chen Jintao Fei Xin Li 405 2 0 25 Feb 2025
MHQA: A Diverse, Knowledge Intensive Mental Health Question Answering Challenge for Language Models Suraj Racha Prashant Joshi Anshika Raman Nikita Jangid Mridul Sharma Ganesh Ramakrishnan Nirmal Punjabi AI4MH 138 1 0 24 Feb 2025
CSTRL: Context-Driven Sequential Transfer Learning for Abstractive Radiology Report Summarization Mst. Fahmida Sultana Naznin Adnan Ibney Faruq Mostafa Rifat Tazwar Md Jobayer Md. Mehedi Hasan Shawon Md Rakibul Hasan MedIm 66 0 0 21 Feb 2025
Tabular Embeddings for Tables with Bi-Dimensional Hierarchical Metadata and Nesting Gyanendra Shrestha Chutain Jiang Sai Akula Vivek Yannam Anna Pyayt Michael Gubanov LMTD 161 0 0 20 Feb 2025
Private Text Generation by Seeding Large Language Model Prompts Supriya Nagesh Justin Y. Chen Nina Mishra Tal Wagner SyDa SILM 104 2 0 20 Feb 2025
From large language models to multimodal AI: A scoping review on the potential of generative AI in medicine Lukas Buess Matthias Keicher Nassir Navab Andreas Maier Soroosh Tayebi Arasteh LM&MA 316 2 0 13 Feb 2025
Assessing the Impact of the Quality of Textual Data on Feature Representation and Machine Learning Models Tabinda Sarwar Antonio Jose Jimeno Yepes Lawrence Cavedon 123 0 0 12 Feb 2025
KARMA: Leveraging Multi-Agent LLMs for Automated Knowledge Graph Enrichment Yuxing Lu Jinzhuo Wang 72 2 0 10 Feb 2025
Efficient Scientific Full Text Classification: The Case of EICAT Impact Assessments Marc Felix Brinner Sina Zarrieß 158 1 0 10 Feb 2025
Privacy-Preserving Dataset Combination Keren Fuentes Mimee Xu Irene Chen 116 0 0 09 Feb 2025
Enhancing Health Information Retrieval with RAG by Prioritizing Topical Relevance and Factual Accuracy Rishabh Uapadhyay Marco Viviani 161 1 0 07 Feb 2025
TMI-CLNet: Triple-Modal Interaction Network for Chronic Liver Disease Prognosis From Imaging, Clinical, and Radiomic Data Fusion Linglong Wu Xuhao Shan Ruiquan Ge Ruoyu Liang Chi Zhang Yonghong Li Ahmed Elazab Huoling Luo Yunbi Liu Changmiao Wang 84 0 0 02 Feb 2025
MEL: Legal Spanish Language Model David Betancur Sánchez Nuria Aldama García Á. Jiménez Marta Guerrero Nieto Patricia Marsà Morales Nicolás Serrano Salas Carlos García Hernán Pablo Haya Coll Elena Montiel Ponsoda Pablo Calleja Ibáñez 116 0 0 28 Jan 2025
Scaling Large Vision-Language Models for Enhanced Multimodal Comprehension In Biomedical Image Analysis Robinson Umeike N. Getty Fangfang Xia Rick L. Stevens 52 3 0 28 Jan 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 230 177 0 28 Jan 2025
Academic case reports lack diversity: Assessing the presence and diversity of sociodemographic and behavioral factors related to Post COVID-19 Condition Juan Andres Medina Florez Shaina Raza Rashida Lynn Zahra Shakeri Brendan T. Smith Elham Dolatabadi 116 0 0 21 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports Henry Watkins Robert J. Gray Adam Julius Y. Mah W. H. Pinaya ... Jorge M. Cardoso Sebastien Ourselin Geraint Rees Rolf Jaeger P. Nachev MedIm 495 3 0 20 Jan 2025
Multi-stage Training of Bilingual Islamic LLM for Neural Passage Retrieval Vera Pavlova 86 1 0 20 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 282 27 0 17 Jan 2025
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports Hajung Kim Chanhwi Kim Jiwoong Sohn Tim Beck Marek Rei ... T Ian Simpson Joram M Posma Antoine Lain Mujeen Sung Jaewoo Kang MedIm 67 0 0 17 Jan 2025
Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized Approaches Gabriel Bianchin de Oliveira Hélio Pedrini Z. Dias MQ 71 0 0 13 Jan 2025
Natural Language-Assisted Multi-modal Medication Recommendation Jie Tan Yu Rong Kangfei Zhao Tian Bian Tingyang Xu Junzhou Huang Hong Cheng Helen Meng 133 2 0 13 Jan 2025
LLM-Net: Democratizing LLMs-as-a-Service through Blockchain-based Expert Networks Zan-Kai Chong Hiroyuki Ohsaki Bryan Ng 78 1 0 13 Jan 2025
MEXA-CTP: Mode Experts Cross-Attention for Clinical Trial Outcome Prediction Yiqing Zhang Xiaozhong Liu Fabricio Murai 84 1 0 12 Jan 2025
EEG Emotion Copilot: Optimizing Lightweight LLMs for Emotional EEG Interpretation with Assisted Medical Record Generation Hongyu Chen Weiming Zeng Chong Chen Luhui Cai Fei Wang ... Wei Zhang Yuchen Li Hongjie Yan W. Siok Nizhuan Wang 78 0 0 08 Jan 2025
Clinical Insights: A Comprehensive Review of Language Models in Medicine Nikita Neveditsin Pawan Lingras V. Mago LM&MA 117 5 0 08 Jan 2025
Advancing Pancreatic Cancer Prediction with a Next Visit Token Prediction Head on top of Med-BERT Jianping He L. Rasmy Degui Zhi Cui Tao 47 1 0 03 Jan 2025
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in Medicine Hanguang Xiao Feizhong Zhou Xianglong Liu Tianqi Liu Zhipeng Li Xin Liu Xiaoxuan Huang AILaw LM&MA LRM 145 30 0 31 Dec 2024
INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning Pablo Romero Lifeng Han Goran Nenadic LM&MA 97 1 0 31 Dec 2024
STAYKATE: Hybrid In-Context Example Selection Combining Representativeness Sampling and Retrieval-based Approach -- A Case Study on Science Domains Chencheng Zhu Kazutaka Shimada Tomoki Taniguchi Tomoko Ohkuma 69 0 0 31 Dec 2024
Research on the Proximity Relationships of Psychosomatic Disease Knowledge Graph Modules Extracted by Large Language Models Zihan Zhou Ziyi Zeng Wenhao Jiang Yihui Zhu Jiaxin Mao Yonggui Yuan Min Xia Shubin Zhao Mengyu Yao Yunqian Chen 36 0 0 24 Dec 2024
GeneSUM: Large Language Model-based Gene Summary Extraction Zhiwen Chen Chuan Hu Min-Ying Wu Qingqing Long Yuanchun Zhou Yuanchun Zhou Meng Xiao 149 1 0 24 Dec 2024
AlzheimerRAG: Multimodal Retrieval Augmented Generation for Clinical Use Cases using PubMed articles A. Lahiri Qinmin Vivian Hu 139 10 0 21 Dec 2024
ADEQA: A Question Answer based approach for joint ADE-Suspect Extraction using Sequence-To-Sequence Transformers Vinayak Arannil Tomal Deb Atanu Roy 160 1 0 20 Dec 2024