BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 621 papers shown

Title
Hardness-guided domain adaptation to recognise biomedical named entities under low-resource scenarios Ngoc Dang Nguyen Lan Du Wray Buntine Changyou Chen Richard Beare 33 7 0 11 Nov 2022
Combining Contrastive Learning and Knowledge Graph Embeddings to develop medical word embeddings for the Italian language Denys Amore Bondarenko Roger Ferrod Luigi Di Caro 21 1 0 09 Nov 2022
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease Chengsheng Mao Jie Xu Luke Rasmussen Yikuan Li P. Adekkanattu ... R. Vassar Guoqian Jiang Fei Wang Jyotishman Pathak Yuan Luo 27 6 0 07 Nov 2022
BERT for Long Documents: A Case Study of Automated ICD Coding Arash Afkanpour Shabir Adeel H. Bassani Arkady Epshteyn Hongbo Fan ... Sanjana Woonna S. Zamani Elli Kanal M. Fomitchev Donny Cheung 44 14 0 04 Nov 2022
BERT-Deep CNN: State-of-the-Art for Sentiment Analysis of COVID-19 Tweets Javad Hassannataj Joloudari Sadiq Hussain M. Nematollahi Rouhollah Bagheri Fatemeh Fazl R. Alizadehsani Reza Lashgari Ashis Talukder 18 39 0 04 Nov 2022
An Easy-to-use and Robust Approach for the Differentially Private De-Identification of Clinical Textual Documents Yakini Tchouka Jean-François Couchot David Laiymani OOD 39 1 0 02 Nov 2022
TOE: A Grid-Tagging Discontinuous NER Model Enhanced by Embedding Tag/Word Relations and More Fine-Grained Tags Jiang-Dong Liu Donghong Ji Jingye Li Dongdong Xie Chong Teng Liang Zhao Fei Li 35 15 0 01 Nov 2022
CCS Explorer: Relevance Prediction, Extractive Summarization, and Named Entity Recognition from Clinical Cohort Studies Irfan Al-Hussaini D. An Albert Lee Sarah Bi Cassie S. Mitchell 14 7 0 01 Nov 2022
WHEN FLUE MEETS FLANG: Benchmarks and Large Pre-trained Language Model for Financial Domain Raj Sanjay Shah Kunal Chawla Dheeraj Eidnani Agam Shah Wendi Du Sudheer Chava Natraj Raman Charese Smiley Jiaao Chen Diyi Yang AIFin 37 103 0 31 Oct 2022
Leveraging knowledge graphs to update scientific word embeddings using latent semantic imputation J. Hoelscher-Obermaier Edward Stevinson V. Stauber Ivaylo Zhelev Victor Botev R. Wu J. Minton 19 0 0 27 Oct 2022
Towards Language-driven Scientific AI José Manuél Gómez-Pérez 34 0 0 27 Oct 2022
Exploring the Value of Pre-trained Language Models for Clinical Named Entity Recognition Yuping Wu Lifeng Han Valerio Antonini Goran Nenadic 33 4 0 23 Oct 2022
Do Language Models Understand Measurements? Sungjin Park Seung-kook Ryu Edward Choi ReLM LRM 57 4 0 23 Oct 2022
PHEE: A Dataset for Pharmacovigilance Event Extraction from Text ZHAOYUE SUN Jiazheng Li Gabriele Pergola Byron C. Wallace Bino John N. Greene Joseph Kim Yulan He 41 38 0 22 Oct 2022
BioLORD: Learning Ontological Representations from Definitions (for Biomedical Concepts and their Textual Descriptions) François Remy Kris Demuynck Thomas Demeester 27 14 0 21 Oct 2022
Towards Realistic Low-resource Relation Extraction: A Benchmark with Empirical Baseline Study Xin Xu Xiang Chen Ningyu Zhang Xin Xie Xi Chen Huajun Chen 34 10 0 19 Oct 2022
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining Renqian Luo Liai Sun Yingce Xia Tao Qin Sheng Zhang Hoifung Poon Tie-Yan Liu MedIm AI4CE LM&MA 62 790 0 19 Oct 2022
Using Bottleneck Adapters to Identify Cancer in Clinical Notes under Low-Resource Constraints Omid Rohanian Hannah Jauncey Mohammadmahdi Nouriborji Vinod Kumar Chauhan Bronner P. Gonccalves Christiana Kartsonaki Isaric Clinical Characterisation Group L. Merson David Clifton 24 7 0 17 Oct 2022
Deep Bidirectional Language-Knowledge Graph Pretraining Michihiro Yasunaga Antoine Bosselut Hongyu Ren Xikun Zhang Christopher D. Manning Percy Liang J. Leskovec 36 194 0 17 Oct 2022
Fine-tuned Sentiment Analysis of COVID-19 Vaccine-Related Social Media Data: Comparative Study Chad A. Melton B. White Robert L. Davis R. Bednarczyk A. Shaban-Nejad 21 25 0 17 Oct 2022
Automatic Creation of Named Entity Recognition Datasets by Querying Phrase Representations Hyunjae Kim J. Yoo Seunghyun Yoon Jaewoo Kang 32 3 0 14 Oct 2022
Can Language Representation Models Think in Bets? Zhi–Bin Tang Mayank Kejriwal 17 6 0 14 Oct 2022
Developing a general-purpose clinical language inference model from a large corpus of clinical notes Madhumita Sushil Dana Ludwig A. Butte V. Rudrapatna LM&MA 20 12 0 12 Oct 2022
MiniALBERT: Model Distillation via Parameter-Efficient Recursive Transformers Mohammadmahdi Nouriborji Omid Rohanian Samaneh Kouchaki David Clifton 37 8 0 12 Oct 2022
MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score Sunjae Kwon Zonghai Yao H. Jordan David Levy Brian Corner Hong-ye Yu 30 18 0 12 Oct 2022
Enriching Biomedical Knowledge for Low-resource Language Through Large-Scale Translation Long Phan Tai Dang H. Tran Trieu H. Trinh Vy Phan Lam D. Chau Minh-Thang Luong 20 8 0 11 Oct 2022
Spread Love Not Hate: Undermining the Importance of Hateful Pre-training for Hate Speech Detection Omkar Gokhale Aditya Kane Shantanu Patankar Tanmay Chavan Raviraj Joshi VLM 37 7 0 09 Oct 2022
KG-MTT-BERT: Knowledge Graph Enhanced BERT for Multi-Type Medical Text Classification Yong He Cheng Wang Shun Zhang Na Li Zhao Li Zhenyu Zeng AI4MH 44 10 0 08 Oct 2022
Short Text Pre-training with Extended Token Classification for E-commerce Query Understanding Haoming Jiang Tianyu Cao Zheng Li Cheng-hsin Luo Xianfeng Tang Qingyu Yin Danqing Zhang R. Goutam Bing Yin RALM 40 11 0 08 Oct 2022
Named Entity Recognition in Twitter: A Dataset and Analysis on Short-Term Temporal Shifts Asahi Ushio Leonardo Neves Vítor Silva Francesco Barbieri Jose Camacho-Collados 25 27 0 07 Oct 2022
GMA3D: Local-Global Attention Learning to Estimate Occluded Motions of Scene Flow Zhiyang Lu Ming Cheng 3DPC 32 4 0 07 Oct 2022
Learning functional sections in medical conversations: iterative pseudo-labeling and human-in-the-loop approach Mengqian Wang Ilya Valmianski X. Amatriain Anitha Kannan 34 2 0 06 Oct 2022
Token Classification for Disambiguating Medical Abbreviations Mucahit Cevik Sanaz Jafari Mitchell Myers Savaş Yıldırım 21 0 0 05 Oct 2022
Understanding Prior Bias and Choice Paralysis in Transformer-based Language Representation Models through Four Experimental Probes Ke Shen Mayank Kejriwal 27 4 0 03 Oct 2022
DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing Yanjun Gao Dmitriy Dligach Timothy A. Miller John R. Caskey Brihat Sharma M. Churpek Majid Afshar ELM LRM 34 17 0 29 Sep 2022
YATO: Yet Another deep learning based Text analysis Open toolkit Zeqiang Wang Yile Wang Jiageng Wu Zhiyang Teng Jie Yang 40 3 0 28 Sep 2022
Improving Radiology Report Generation Systems by Removing Hallucinated References to Non-existent Priors Vignav Ramesh Nathan Chi Pranav Rajpurkar MedIm 36 49 0 27 Sep 2022
Variational Open-Domain Question Answering Valentin Liévin Andreas Geert Motzfeldt Ida Riis Jensen Ole Winther OOD BDL 41 8 0 23 Sep 2022
Adaptation of domain-specific transformer models with text oversampling for sentiment analysis of social media posts on Covid-19 vaccines Anmol Bansal Arjun Choudhry Anubhav Sharma Seba Susan MedIm 21 4 0 22 Sep 2022
Generalizing through Forgetting -- Domain Generalization for Symptom Event Extraction in Clinical Notes Sitong Zhou K. Lybarger Meliha Yetisgen-Yildiz Mari Ostendorf 40 2 0 20 Sep 2022
Automated MeSH Term Suggestion for Effective Query Formulation in Systematic Reviews Literature Search Shuai Wang Harrisen Scells Bevan Koopman Guido Zuccon AI4CE 31 17 0 19 Sep 2022
Dataset Inference for Self-Supervised Models Adam Dziedzic Haonan Duan Muhammad Ahmad Kaleem Nikita Dhawan Jonas Guan Yannis Cattan Franziska Boenisch Nicolas Papernot 39 26 0 16 Sep 2022
De-Identification of French Unstructured Clinical Notes for Machine Learning Tasks Yakini Tchouka Jean-François Couchot Maxime Coulmeau David Laiymani Philippe Selles Azzedine Rahmani OOD 22 5 0 16 Sep 2022
Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models David Oniani Sreekanth Sreekumar Renuk DeAlmeida D. DeAlmeida Vivian Hui Y. Lee Yiye Zhang Leming Zhou Yanshan Wang LM&MA 31 5 0 14 Sep 2022
Prompt Combines Paraphrase: Teaching Pre-trained Models to Understand Rare Biomedical Words Hao Wang Chi-Liang Liu Nuwa Xi Sendong Zhao Meizhi Ju Shiwei Zhang Ziheng Zhang Yefeng Zheng Bing Qin Ting Liu VLM AAML LM&MA 41 6 0 14 Sep 2022
Pre-trained Language Models for the Legal Domain: A Case Study on Indian Law Shounak Paul A. Mandal Pawan Goyal Saptarshi Ghosh AILaw VLM ELM 40 45 0 13 Sep 2022
A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Fuchun Sun Dazhao Du Zhao-Qing Yang Yujie Zhou Jiangmeng Li Anyi Rao Haoran Sun Zhiwu Lu Ji-Rong Wen 58 108 0 12 Sep 2022
T-NER: An All-Round Python Library for Transformer-based Named Entity Recognition Asahi Ushio Jose Camacho-Collados 20 73 0 09 Sep 2022
OneEE: A One-Stage Framework for Fast Overlapping and Nested Event Extraction H. Cao Jingye Li Fangfang Su Fei Li Hao Fei Shengqiong Wu Bobo Li Liang Zhao Donghong Ji 46 36 0 06 Sep 2022
Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning Sheng Zhang Hao Cheng Jianfeng Gao Hoifung Poon 38 47 0 30 Aug 2022