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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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Multilingual is not enough: BERT for Finnish Antti Virtanen Jenna Kanerva Rami Ilo Jouni Luoma Juhani Luotolahti T. Salakoski Filip Ginter S. Pyysalo 88 281 0 15 Dec 2019
Extracting clinical concepts from user queries Yue Zhao J. Handley 24 1 0 12 Dec 2019
Self-Supervised Contextual Language Representation of Radiology Reports to Improve the Identification of Communication Urgency Xing Meng C. Ganoe R. Sieberg Yvonne Y. Cheung Saeid Hassanpour MedIm 35 12 0 05 Dec 2019
EduBERT: Pretrained Deep Language Models for Learning Analytics Benjamin Clavié K. Gal 21 16 0 02 Dec 2019
Integrating Graph Contextualized Knowledge into Pre-trained Language Models Bin He Di Zhou Jinghui Xiao Xin jiang Qun Liu Nicholas Jing Yuan Tong Xu AI4CE 67 78 0 30 Nov 2019
Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge Cong Sun Zhihao Yang Leilei Su Lei Wang Yin Zhang Hongfei Lin Jian Wang 20 25 0 21 Nov 2019
Evaluating robustness of language models for chief complaint extraction from patient-generated text Ilya Valmianski Caleb Goodwin Ian M. Finn Naqi Khan D. Zisook 46 6 0 15 Nov 2019
Leveraging Dependency Forest for Neural Medical Relation Extraction Linfeng Song Yue Zhang D. Gildea Mo Yu Zhiguo Wang Jinsong Su Jinsong Su MedIm 78 34 0 11 Nov 2019
Knowledge Guided Named Entity Recognition for BioMedical Text Pratyay Banerjee Kuntal Kumar Pal M. Devarakonda Chitta Baral 41 0 0 10 Nov 2019
Discovering Invariances in Healthcare Neural Networks M. T. Bahadori Layne Price OOD 23 0 0 08 Nov 2019
Towards Domain Adaptation from Limited Data for Question Answering Using Deep Neural Networks Timothy J. Hazen Shehzaad Dhuliawala Daniel Boies OOD 60 19 0 06 Nov 2019
Unsupervised Domain Adaptation of Contextual Embeddings for Low-Resource Duplicate Question Detection Alexandre Rochette Yadollah Yaghoobzadeh Timothy J. Hazen 46 10 0 06 Nov 2019
How to Pre-Train Your Model? Comparison of Different Pre-Training Models for Biomedical Question Answering S. Kamath Brigitte Grau Yue Ma AI4MH 36 7 0 02 Nov 2019
BERT Goes to Law School: Quantifying the Competitive Advantage of Access to Large Legal Corpora in Contract Understanding Emad Elwany David A. Moore Gaurav Oberoi AILaw ELM 76 34 0 01 Nov 2019
Deep Bidirectional Transformers for Relation Extraction without Supervision Yannis Papanikolaou Ian Roberts Andrea Pierleoni ViT 75 21 0 01 Nov 2019
A Neural Topic-Attention Model for Medical Term Abbreviation Disambiguation Irene Li Michihiro Yasunaga Muhammed Yavuz Nuzumlali C. Caraballo S. Mahajan H. Krumholz Dragomir R. Radev 51 28 0 30 Oct 2019
Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels Tung Tran Ramakanth Kavuluru H. Kilicoglu GNN 37 4 0 28 Oct 2019
Keyphrase Extraction from Scholarly Articles as Sequence Labeling using Contextualized Embeddings Dhruva Sahrawat Debanjan Mahata Mayank Kulkarni Haimin Zhang Rakesh Gosangi Amanda Stent Agniv Sharma Yaman Kumar Singla R. Shah Roger Zimmermann 35 30 0 19 Oct 2019
Domain-Relevant Embeddings for Medical Question Similarity Clara H. McCreery Namit Katariya A. Kannan Manish Chablani X. Amatriain 36 9 0 09 Oct 2019
Extracting UMLS Concepts from Medical Text Using General and Domain-Specific Deep Learning Models Sicong Tang Feitong Tan Berry de Bruijn Muqun Li A. LaPlante P. Tan 60 13 0 03 Oct 2019
Cracking the Contextual Commonsense Code: Understanding Commonsense Reasoning Aptitude of Deep Contextual Representations Jeff Da Jungo Kasai LRM 73 41 0 02 Oct 2019
BillSum: A Corpus for Automatic Summarization of US Legislation Anastassia Kornilova Vladimir Eidelman AILaw 85 156 0 01 Oct 2019
On the use of BERT for Neural Machine Translation Stéphane Clinchant K. Jung Vassilina Nikoulina 84 90 0 27 Sep 2019
Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture Ashok Thillaisundaram Theodosia Togia 52 17 0 26 Sep 2019
Does BERT Make Any Sense? Interpretable Word Sense Disambiguation with Contextualized Embeddings Gregor Wiedemann Steffen Remus Avi Chawla Chris Biemann 106 176 0 23 Sep 2019
Biomedical Mention Disambiguation using a Deep Learning Approach Chih-Hsuan Wei Kyubum Lee Robert Leaman Zhiyong Lu MedIm 43 15 0 23 Sep 2019
Representation Learning for Electronic Health Records W. Weng Peter Szolovits 76 19 0 19 Sep 2019
Pre-trained Language Model for Biomedical Question Answering Wonjin Yoon Jinhyuk Lee Donghyeon Kim Minbyul Jeong Jaewoo Kang AI4MH 79 86 0 18 Sep 2019
SUPP.AI: Finding Evidence for Supplement-Drug Interactions Lucy Lu Wang Oyvind Tafjord Arman Cohan Sarthak Jain Sam Skjonsberg Carissa Schoenick Nick Botner Bridger Waleed Ammar 34 2 0 17 Sep 2019
Bridging the domain gap in cross-lingual document classification Guokun Lai Barlas Oğuz Yiming Yang Veselin Stoyanov VLM 63 14 0 16 Sep 2019
PubMedQA: A Dataset for Biomedical Research Question Answering Qiao Jin Bhuwan Dhingra Zhengping Liu William W. Cohen Xinghua Lu 419 917 0 13 Sep 2019
Measuring Domain Portability and ErrorPropagation in Biomedical QA Stefan Hosein D. Andor Ryan T. McDonald 49 9 0 12 Sep 2019
Scientific Discourse Tagging for Evidence Extraction Xiangci Li Gully A. Burns Nanyun Peng 122 25 0 10 Sep 2019
Pretrained AI Models: Performativity, Mobility, and Change Lav Varshney N. Keskar R. Socher 68 20 0 07 Sep 2019
Specializing Unsupervised Pretraining Models for Word-Level Semantic Similarity Anne Lauscher Ivan Vulić Edoardo Ponti Anna Korhonen Goran Glavaš SSL 85 58 0 05 Sep 2019
Incorporating Domain Knowledge into Medical NLI using Knowledge Graphs Soumya Sharma Bishal Santra Abhik Jana Santosh T.Y.S.S Niloy Ganguly Pawan Goyal 49 23 0 31 Aug 2019
Learning to Transfer Learn: Reinforcement Learning-Based Selection for Adaptive Transfer Learning Linchao Zhu Sercan O. Arik Yezhou Yang Tomas Pfister 76 5 0 29 Aug 2019
HARE: a Flexible Highlighting Annotator for Ranking and Exploration Denis R. Newman-Griffis Eric Fosler-Lussier 34 11 0 29 Aug 2019
Question Answering based Clinical Text Structuring Using Pre-trained Language Model Jiahui Qiu Yangming Zhou Zhiyuan Ma Tong Ruan Jinlin Liu Jing Sun 51 4 0 19 Aug 2019
Learning Conceptual-Contextual Embeddings for Medical Text Xiao Zhang Dejing Dou Ji Wu BDL 62 17 0 16 Aug 2019
BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks Shreyas Sharma Ron Daniel 50 33 0 13 Aug 2019
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning Surabhi Datta Yuqi Si Laritza M. Rodriguez S. E. Shooshan Dina Demner-Fushman Kirk Roberts MedIm 64 35 0 13 Aug 2019
TAPER: Time-Aware Patient EHR Representation Sajad Darabi Mohammad Kachuee Shayan Fazeli Majid Sarrafzadeh 68 57 0 11 Aug 2019
BERT-based Ranking for Biomedical Entity Normalization Zongcheng Ji Qiang Wei Hua Xu OOD MedIm 68 125 0 09 Aug 2019
Attention-Wrapped Hierarchical BLSTMs for DDI Extraction Vahab Mostafapour Oguz Dikenelli BDL 42 6 0 31 Jul 2019
Lexical Simplification with Pretrained Encoders Jipeng Qiang Yun Li Yi Zhu Yunhao Yuan Xindong Wu 66 11 0 14 Jul 2019
UW-BHI at MEDIQA 2019: An Analysis of Representation Methods for Medical Natural Language Inference William R. Kearns Wilson Lau Jason Thomas 29 3 0 09 Jul 2019
Enhancing PIO Element Detection in Medical Text Using Contextualized Embedding H. Mezaoui A. Gontcharov Isuru Gunasekara 16 5 0 26 Jun 2019
REflex: Flexible Framework for Relation Extraction in Multiple Domains Geeticka Chauhan Matthew B. A. McDermott Peter Szolovits 44 13 0 19 Jun 2019
Surf at MEDIQA 2019: Improving Performance of Natural Language Inference in the Clinical Domain by Adopting Pre-trained Language Model Jiin Nam Seunghyun Yoon Kyomin Jung LM&MA 24 3 0 19 Jun 2019