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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking Afshin Rahimi Timothy Baldwin Karin Verspoor 33 9 0 04 May 2020
Clinical Reading Comprehension: A Thorough Analysis of the emrQA Dataset Xiang Yue Bernal Jimenez Gutierrez Huan Sun 123 49 0 01 May 2020
Improving Broad-Coverage Medical Entity Linking with Semantic Type Prediction and Large-Scale Datasets Shikhar Vashishth Denis R. Newman-Griffis Rishabh Joshi Ritam Dutt Carolyn Rose 84 28 0 01 May 2020
Biomedical Entity Representations with Synonym Marginalization Mujeen Sung Hwisang Jeon Jinhyuk Lee Jaewoo Kang 113 133 0 01 May 2020
Data and Representation for Turkish Natural Language Inference Emrah Budur Rıza Özçelik Tunga Güngör Christopher Potts 40 1 0 30 Apr 2020
Zero-shot Neural Passage Retrieval via Domain-targeted Synthetic Question Generation Ji Ma I. Korotkov Yinfei Yang Keith B. Hall Ryan T. McDonald RALM 71 32 0 29 Apr 2020
"The Boating Store Had Its Best Sail Ever": Pronunciation-attentive Contextualized Pun Recognition Yichao Zhou Jyun-Yu Jiang Jieyu Zhao Kai-Wei Chang Wei Wang 35 13 0 29 Apr 2020
Rapidly Bootstrapping a Question Answering Dataset for COVID-19 Raphael Tang Rodrigo Nogueira Edwin Zhang Nikhil Gupta P. Cẩm Kyunghyun Cho Jimmy J. Lin 62 72 0 23 Apr 2020
Privacy at Scale: Introducing the PrivaSeer Corpus of Web Privacy Policies Mukund Srinath Shomir Wilson C. Lee Giles PILM 30 52 0 23 Apr 2020
QURIOUS: Question Generation Pretraining for Text Generation Shashi Narayan Gonçalo Simães Ji Ma Hannah Craighead Ryan T. McDonald 83 15 0 23 Apr 2020
Don't Stop Pretraining: Adapt Language Models to Domains and Tasks Suchin Gururangan Ana Marasović Swabha Swayamdipta Kyle Lo Iz Beltagy Doug Downey Noah A. Smith VLM AI4CE CLL 177 2,450 0 23 Apr 2020
CORD-19: The COVID-19 Open Research Dataset Lucy Lu Wang Kyle Lo Yoganand Chandrasekhar Russell Reas Jiangjiang Yang ... Boya Xie Douglas A. Raymond Daniel S. Weld Oren Etzioni Sebastian Kohlmeier 126 812 0 22 Apr 2020
Train No Evil: Selective Masking for Task-Guided Pre-Training Yuxian Gu Zhengyan Zhang Xiaozhi Wang Zhiyuan Liu Maosong Sun 141 59 0 21 Apr 2020
CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT Akshay Smit Saahil Jain Pranav Rajpurkar Anuj Pareek A. Ng M. Lungren MedIm 77 333 0 20 Apr 2020
Enhancing Pharmacovigilance with Drug Reviews and Social Media Brent Biseda K. Mo 34 11 0 18 Apr 2020
Augmented Curation of Unstructured Clinical Notes from a Massive EHR System Reveals Specific Phenotypic Signature of Impending COVID-19 Diagnosis F. Shweta K. Murugadoss S. Awasthi A. Venkatakrishnan Arjun Puranik ... G. Gores A. Williams J. Halamka V. Soundararajan A. Badley 53 26 0 17 Apr 2020
Cascade Neural Ensemble for Identifying Scientifically Sound Articles Ashwin Karthik Ambalavanan M. Devarakonda 38 1 0 13 Apr 2020
Robustly Pre-trained Neural Model for Direct Temporal Relation Extraction Hong Guan Jianfu Li Hua Xu M. Devarakonda 15 11 0 13 Apr 2020
Annotating Social Determinants of Health Using Active Learning, and Characterizing Determinants Using Neural Event Extraction K. Lybarger Mari Ostendorf Meliha Yetisgen 60 72 0 11 Apr 2020
Rapidly Deploying a Neural Search Engine for the COVID-19 Open Research Dataset: Preliminary Thoughts and Lessons Learned Edwin Zhang Nikhil Gupta Rodrigo Nogueira Kyunghyun Cho Jimmy J. Lin 55 58 0 10 Apr 2020
Calibrating Structured Output Predictors for Natural Language Processing Abhyuday N. Jagannatha Hong-ye Yu 103 28 0 09 Apr 2020
CALM: Continuous Adaptive Learning for Language Modeling Kristjan Arumae Parminder Bhatia CLL KELM 29 6 0 08 Apr 2020
The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews E. Tutubalina I. Alimova Z. Miftahutdinov Andrey Sakhovskiy Valentin Malykh Sergey I. Nikolenko 62 44 0 07 Apr 2020
Inexpensive Domain Adaptation of Pretrained Language Models: Case Studies on Biomedical NER and Covid-19 QA Nina Poerner Ulli Waltinger Hinrich Schütze OOD 76 50 0 07 Apr 2020
DARE: Data Augmented Relation Extraction with GPT-2 Yannis Papanikolaou Andrea Pierleoni 52 76 0 06 Apr 2020
Continual Domain-Tuning for Pretrained Language Models Subendhu Rongali Abhyuday N. Jagannatha Bhanu Pratap Singh Rawat Hong-ye Yu CLL KELM 50 7 0 05 Apr 2020
Identifying Radiological Findings Related to COVID-19 from Medical Literature Yuxiao Liang P. Xie 33 11 0 04 Apr 2020
Deep Entity Matching with Pre-Trained Language Models Yuliang Li Jinfeng Li Yoshihiko Suhara A. Doan W. Tan VLM 108 391 0 01 Apr 2020
NukeBERT: A Pre-trained language model for Low Resource Nuclear Domain Ayush Jain Meenachi Ganesamoorty Dr. B. Venkatraman 45 13 0 30 Mar 2020
Named Entities in Medical Case Reports: Corpus and Experiments Sarah Schulz Jurica vSeva Samuel Rodriguez Malte Ostendorff Georg Rehm 44 9 0 29 Mar 2020
A Survey of Deep Learning for Scientific Discovery M. Raghu Erica Schmidt OOD AI4CE 179 123 0 26 Mar 2020
Pre-trained Models for Natural Language Processing: A Survey Xipeng Qiu Tianxiang Sun Yige Xu Yunfan Shao Ning Dai Xuanjing Huang LM&MA VLM 383 1,498 0 18 Mar 2020
Parallel sequence tagging for concept recognition Lenz Furrer Joseph Cornelius Fabio Rinaldi 14 9 0 16 Mar 2020
Hurtful Words: Quantifying Biases in Clinical Contextual Word Embeddings H. Zhang Amy X. Lu Mohamed Abdalla Matthew B. A. McDermott Marzyeh Ghassemi 72 176 0 11 Mar 2020
Investigating Entity Knowledge in BERT with Simple Neural End-To-End Entity Linking Samuel Broscheit OCL 97 123 0 11 Mar 2020
Med7: a transferable clinical natural language processing model for electronic health records Andrey Kormilitzin N. Vaci Qiang Liu A. Nevado-Holgado 97 120 0 03 Mar 2020
Parsing Early Modern English for Linguistic Search S. Kulick Neville Ryant 34 2 0 24 Feb 2020
Federated pretraining and fine tuning of BERT using clinical notes from multiple silos Dianbo Liu Timothy A. Miller AI4MH 71 35 0 20 Feb 2020
The Microsoft Toolkit of Multi-Task Deep Neural Networks for Natural Language Understanding Xiaodong Liu Yu Wang Jianshu Ji Hao Cheng Xueyun Zhu ... Pengcheng He Weizhu Chen Hoifung Poon Guihong Cao Jianfeng Gao AI4CE 77 61 0 19 Feb 2020
The Utility of General Domain Transfer Learning for Medical Language Tasks D. Ranti Katie Hanss Shan Zhao Varun Arvind J. Titano A. Costa Eric Oermann LM&MA MedIm 26 7 0 16 Feb 2020
Automated Labelling using an Attention model for Radiology reports of MRI scans (ALARM) D. Wood J. Lynch S. Kafiabadi Emily Guilhem A. A. Busaidi ... Keena Patel Gareth J. Barker S. Ourselin James H. Cole Thomas C Booth MedIm 58 42 0 16 Feb 2020
CBAG: Conditional Biomedical Abstract Generation Justin Sybrandt Ilya Safro MedIm AI4CE 50 8 0 13 Feb 2020
Snippext: Semi-supervised Opinion Mining with Augmented Data Zhengjie Miao Yuliang Li Xiaolan Wang W. Tan RALM VLM 76 91 0 07 Feb 2020
UNCC Biomedical Semantic Question Answering Systems. BioASQ: Task-7B, Phase-B Sai Krishna Telukuntla Aditya Kapri Wlodek Zadrozny 47 9 0 05 Feb 2020
Learning Contextualized Document Representations for Healthcare Answer Retrieval Sebastian Arnold Betty van Aken Paul Grundmann Felix Alexander Gers Alexander Loser 26 13 0 03 Feb 2020
Explaining Relationships Between Scientific Documents Kelvin Luu Xinyi Wu Rik Koncel-Kedziorski Kyle Lo Isabel Cachola Noah A. Smith 124 50 0 02 Feb 2020
PoWER-BERT: Accelerating BERT Inference via Progressive Word-vector Elimination Saurabh Goyal Anamitra R. Choudhury Saurabh ManishRaje Venkatesan T. Chakaravarthy Yogish Sabharwal Ashish Verma 96 18 0 24 Jan 2020
MT-BioNER: Multi-task Learning for Biomedical Named Entity Recognition using Deep Bidirectional Transformers Muhammad Raza Khan Morteza Ziyadi M. Abdelhady MedIm 57 44 0 24 Jan 2020
AutoDiscern: Rating the Quality of Online Health Information with Hierarchical Encoder Attention-based Neural Networks Laura Kinkead Ahmed Allam Michael Krauthammer 27 20 0 30 Dec 2019
End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models John Giorgi Xindi Wang Nicola Sahar W. Shin Gary D. Bader Bo Wang 76 38 0 20 Dec 2019