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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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Discovering key topics from short, real-world medical inquiries via natural language processing and unsupervised learning Angelo Ziletti Christoph Berns Oliver Treichel Thomas Weber Jennifer J. Liang ... Marion Schwaerzler J. Virayah D. Ruau Xin Ma Andreas Mattern 34 0 0 08 Dec 2020
CrossNER: Evaluating Cross-Domain Named Entity Recognition Zihan Liu Yan Xu Tiezheng Yu Wenliang Dai Ziwei Ji Samuel Cahyawijaya Andrea Madotto Pascale Fung 149 155 0 08 Dec 2020
COVIDScholar: An automated COVID-19 research aggregation and analysis platform Amalie Trewartha John Dagdelen Haoyan Huo Kevin Cruse Zheren Wang ... Akshay Subramanian Yuxing Fei Benjamin Justus Kristin A. Persson Gerbrand Ceder 75 20 0 07 Dec 2020
Big Green at WNUT 2020 Shared Task-1: Relation Extraction as Contextualized Sequence Classification Chris Miller Soroush Vosoughi NAI 22 3 0 07 Dec 2020
Coarse-to-Fine Entity Representations for Document-level Relation Extraction Damai Dai Jingjing Ren Shuang Zeng Baobao Chang Zhifang Sui AI4TS 63 3 0 04 Dec 2020
End-to-End QA on COVID-19: Domain Adaptation with Synthetic Training R. Reddy Bhavani Iyer Md Arafat Sultan Rong Zhang Avirup Sil Vittorio Castelli Radu Florian Salim Roukos OOD 68 19 0 02 Dec 2020
Neural language models for text classification in evidence-based medicine Andrés Carvallo Denis Parra G. Rada Daniel Pérez Juan Vásquez Camilo Vergara LM&MA 8 6 0 01 Dec 2020
Transformer Query-Target Knowledge Discovery (TEND): Drug Discovery from CORD-19 Leo K. Tam Xiaosong Wang Daguang Xu MedIm 36 2 0 28 Nov 2020
Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health Denis R. Newman-Griffis Eric Fosler-Lussier 64 20 0 27 Nov 2020
Denmark's Participation in the Search Engine TREC COVID-19 Challenge: Lessons Learned about Searching for Precise Biomedical Scientific Information on COVID-19 Lucas Chaves Lima Casper Hansen Christian B. Hansen Dongsheng Wang Maria Maistro Birger Larsen J. Simonsen Christina Lioma 58 2 0 25 Nov 2020
Experiments on transfer learning architectures for biomedical relation extraction Walid Hafiane Joël Legrand Y. Toussaint Adrien Coulet 24 6 0 24 Nov 2020
Domain-Transferable Method for Named Entity Recognition Task Vladislav Mikhailov Tatiana Shavrina 18 2 0 24 Nov 2020
Cross-Domain Generalization Through Memorization: A Study of Nearest Neighbors in Neural Duplicate Question Detection Yadollah Yaghoobzadeh Alexandre Rochette Timothy J. Hazen OOD 21 1 0 22 Nov 2020
Learning Informative Representations of Biomedical Relations with Latent Variable Models Harshil Shah Julien Fauqueur 15 0 0 20 Nov 2020
Ontology-based and User-focused Automatic Text Summarization (OATS): Using COVID-19 Risk Factors as an Example Po-Hsu Chen Amy Leibrand Jordan Vasko M. Gauthier 27 1 0 18 Nov 2020
Predictions For Pre-training Language Models Tonglei Guo 16 0 0 18 Nov 2020
Biomedical Named Entity Recognition at Scale Veysel Kocaman D. Talby 71 72 0 12 Nov 2020
Biomedical Information Extraction for Disease Gene Prioritization Jupinder Parmar William C. Koehler Martin Bringmann Katharina Sophia Volz Berk Kapicioglu 16 6 0 10 Nov 2020
CODER: Knowledge infused cross-lingual medical term embedding for term normalization Zheng Yuan Zhengyun Zhao Haixia Sun Jiao Li Fei Wang Sheng Yu MedIm 91 98 0 05 Nov 2020
Extracting Chemical-Protein Interactions via Calibrated Deep Neural Network and Self-training Dongha Choi Hyunju Lee 30 5 0 04 Nov 2020
Analyzing Sustainability Reports Using Natural Language Processing A. Luccioni Emi Baylor N. Duchêne 72 48 0 03 Nov 2020
Tabular Transformers for Modeling Multivariate Time Series Inkit Padhi Yair Schiff Igor Melnyk Mattia Rigotti Youssef Mroueh Pierre Dognin Jerret Ross Ravi Nair Erik Altman LMTD AI4TS 85 92 0 03 Nov 2020
CMT in TREC-COVID Round 2: Mitigating the Generalization Gaps from Web to Special Domain Search Chenyan Xiong Zhenghao Liu Si Sun Zhuyun Dai Kaitao Zhang S. Yu Zhiyuan Liu Hoifung Poon Jianfeng Gao Paul N. Bennett 63 11 0 03 Nov 2020
BioNerFlair: biomedical named entity recognition using flair embedding and sequence tagger Harsh Patel 33 7 0 03 Nov 2020
Analyzing the Effect of Multi-task Learning for Biomedical Named Entity Recognition Arda Akdemir T. Shibuya 39 4 0 01 Nov 2020
Investigation of BERT Model on Biomedical Relation Extraction Based on Revised Fine-tuning Mechanism P. Su K. Vijay-Shanker 62 20 0 01 Nov 2020
Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation Hang Dong Víctor Suárez-Paniagua W. Whiteley Honghan Wu 102 72 0 29 Oct 2020
Multiple Sclerosis Severity Classification From Clinical Text Alister D Costa Stefan Denkovski Michal Malyska S. Moon Brandon Rufino Zhen Yang Taylor W. Killian Marzyeh Ghassemi 68 12 0 29 Oct 2020
A Comprehensive Survey on Word Representation Models: From Classical to State-Of-The-Art Word Representation Language Models Usman Naseem Imran Razzak S. Khan M. Prasad 86 160 0 28 Oct 2020
On the diminishing return of labeling clinical reports Jean-Baptiste Lamare Tobi Olatunji Linxing Yao 28 2 0 27 Oct 2020
WNUT-2020 Task 1 Overview: Extracting Entities and Relations from Wet Lab Protocols Jeniya Tabassum Sydney Lee Wei Xu Alan Ritter 99 18 0 27 Oct 2020
Accelerating Training of Transformer-Based Language Models with Progressive Layer Dropping Minjia Zhang Yuxiong He AI4CE 48 104 0 26 Oct 2020
HateBERT: Retraining BERT for Abusive Language Detection in English Tommaso Caselli Valerio Basile Jelena Mitrović Michael Granitzer 100 379 0 23 Oct 2020
A Survey on Recent Approaches for Natural Language Processing in Low-Resource Scenarios Michael A. Hedderich Lukas Lange Heike Adel Jannik Strötgen Dietrich Klakow 347 301 0 23 Oct 2020
Text Mining to Identify and Extract Novel Disease Treatments From Unstructured Datasets Rahul Yedida S. Abrar C. Melo-Filho E. Muratov Rada Y. Chirkova A. Tropsha 8 1 0 22 Oct 2020
Clustering-based Inference for Biomedical Entity Linking Rico Angell Nicholas Monath Sunil Mohan Nishant Yadav Andrew McCallum 70 4 0 21 Oct 2020
Explaining black-box text classifiers for disease-treatment information extraction M. Moradi Matthias Samwald 92 2 0 21 Oct 2020
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters Hicham El Boukkouri Olivier Ferret Thomas Lavergne Hiroshi Noji Pierre Zweigenbaum Junichi Tsujii 153 161 0 20 Oct 2020
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus George Michalopoulos Yuanxin Wang H. Kaka Helen H. Chen Alexander Wong 100 126 0 20 Oct 2020
A Benchmark for Lease Contract Review Spyretta Leivaditi Julien Rossi Evangelos Kanoulas AILaw 175 37 0 20 Oct 2020
Explainable Automated Fact-Checking for Public Health Claims Neema Kotonya Francesca Toni 266 262 0 19 Oct 2020
SmartTriage: A system for personalized patient data capture, documentation generation, and decision support Ilya Valmianski Nave Frost Navdeep Sood Yang Wang Baodong Liu James J. Zhu Sunil Karumuri Ian M. Finn D. Zisook 42 7 0 19 Oct 2020
Drug Repurposing for COVID-19 via Knowledge Graph Completion Rui Zhang D. Hristovski Dalton Schutte Andrej Kastrin M. Fiszman H. Kilicoglu 25 4 0 19 Oct 2020
TweetBERT: A Pretrained Language Representation Model for Twitter Text Analysis Mohiuddin Md Abdul Qudar Vijay K. Mago SSeg 52 38 0 17 Oct 2020
Detecting ESG topics using domain-specific language models and data augmentation approaches Timothy Nugent N. Stelea Jochen L. Leidner 67 13 0 16 Oct 2020
Fine-Tuning Pre-trained Language Model with Weak Supervision: A Contrastive-Regularized Self-Training Approach Yue Yu Simiao Zuo Haoming Jiang Wendi Ren T. Zhao Chao Zhang AI4MH 73 133 0 15 Oct 2020
Pretrained Transformers for Text Ranking: BERT and Beyond Jimmy J. Lin Rodrigo Nogueira Andrew Yates VLM 391 628 0 13 Oct 2020
Aspect-based Document Similarity for Research Papers Malte Ostendorff Terry Ruas Till Blume Bela Gipp Georg Rehm 105 27 0 13 Oct 2020
RGCL at SemEval-2020 Task 6: Neural Approaches to Definition Extraction Tharindu Ranasinghe Alistair Plum Constantin Orasan R. Mitkov NAI 21 2 0 13 Oct 2020
BioMegatron: Larger Biomedical Domain Language Model Hoo-Chang Shin Yang Zhang Evelina Bakhturina Raul Puri M. Patwary Mohammad Shoeybi Raghav Mani AI4CE 63 148 0 12 Oct 2020