BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 610 papers shown

Title
Building a Corpus for Biomedical Relation Extraction of Species Mentions Oumaima El Khettari Solen Quiniou Samuel Chaffron 26 2 0 14 Jun 2023
QUERT: Continual Pre-training of Language Model for Query Understanding in Travel Domain Search Jian Xie Yidan Liang Jingping Liu Yanghua Xiao Baohua Wu Shenghua Ni VLM LRM 38 8 0 11 Jun 2023
Mixture-of-Domain-Adapters: Decoupling and Injecting Domain Knowledge to Pre-trained Language Models Memories Shizhe Diao Tianyang Xu Ruijia Xu Jiawei Wang Tong Zhang MoE AI4CE 13 36 0 08 Jun 2023
CUED at ProbSum 2023: Hierarchical Ensemble of Summarization Models Potsawee Manakul Yassir Fathullah Adian Liusie Vyas Raina Vatsal Raina Mark Gales 29 12 0 08 Jun 2023
Extensive Evaluation of Transformer-based Architectures for Adverse Drug Events Extraction Simone Scaboro Beatrice Portelli Emmanuele Chersoni Enrico Santus Giuseppe Serra 24 8 0 08 Jun 2023
Leveraging Knowledge Graph Embeddings to Enhance Contextual Representations for Relation Extraction F. Laleye Loïc Rakotoson S. Massip 18 1 0 07 Jun 2023
CoSiNES: Contrastive Siamese Network for Entity Standardization Jiaqing Yuan Michele Merler M. Choudhury Raju Pavuluri Munindar P. Singh M. Vukovic 22 0 0 05 Jun 2023
shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation Sanjeev Kumar Karn Rikhiya Ghosh P. Kusuma Oladimeji Farri LM&MA MedIm AI4CE 33 12 0 05 Jun 2023
RadLing: Towards Efficient Radiology Report Understanding Rikhiya Ghosh Sanjeev Kumar Karn Manuela Danu Larisa Micu Ramya Vunikili Oladimeji Farri MedIm 29 6 0 04 Jun 2023
MedNgage: A Dataset for Understanding Engagement in Patient-Nurse Conversations Yan Wang H. Donovan Sabit Hassan Mailhe Alikhani 40 2 0 31 May 2023
Understanding Breast Cancer Survival: Using Causality and Language Models on Multi-omics Data Mugariya Farooq Shahad Hardan Aigerim Zhumbhayeva Yu Zheng Preslav Nakov Kun Zhang CML 22 1 0 28 May 2023
Complementary and Integrative Health Lexicon (CIHLex) and Entity Recognition in the Literature Huixue Zhou R. Austin Sheng-Chieh Lu Greg M. Silverman Yuqi Zhou H. Kilicoglu Huan Xu Rui Zhang 186 1 0 27 May 2023
Training Data Extraction From Pre-trained Language Models: A Survey Shotaro Ishihara 37 46 0 25 May 2023
Difference-Masking: Choosing What to Mask in Continued Pretraining Alex Wilf Syeda Nahida Akter Leena Mathur Paul Pu Liang Sheryl Mathew Mengrou Shou Eric Nyberg Louis-Philippe Morency CLL SSL 32 4 0 23 May 2023
Pre-training Multi-task Contrastive Learning Models for Scientific Literature Understanding Yu Zhang Hao Cheng Zhihong Shen Xiaodong Liu Yejiang Wang Jianfeng Gao 32 14 0 23 May 2023
Evaluating Prompt-based Question Answering for Object Prediction in the Open Research Knowledge Graph Jennifer D'Souza Moussab Hrou Sören Auer 24 2 0 22 May 2023
Farewell to Aimless Large-scale Pretraining: Influential Subset Selection for Language Model Xiao Wang Wei Zhou Qi Zhang Jie Zhou Songyang Gao Junzhe Wang Menghan Zhang Xiang Gao Yunwen Chen Tao Gui 48 7 0 22 May 2023
Enhancing Small Medical Learners with Privacy-preserving Contextual Prompting Xinlu Zhang Shiyang Li Xianjun Yang Chenxin Tian Yao Qin Linda R. Petzold 28 9 0 22 May 2023
TADA: Efficient Task-Agnostic Domain Adaptation for Transformers Chia-Chien Hung Lukas Lange Jannik Strötgen 30 9 0 22 May 2023
Gene Set Summarization using Large Language Models marcin p. joachimiak J. H. Caufield N. Harris Hyeongsik Kim Christopher J. Mungall 31 18 0 21 May 2023
ESCOXLM-R: Multilingual Taxonomy-driven Pre-training for the Job Market Domain Mike Zhang Rob van der Goot Barbara Plank 24 14 0 20 May 2023
MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement Zifeng Wang Chufan Gao Cao Xiao Jimeng Sun LMTD 35 12 0 20 May 2023
Appraising the Potential Uses and Harms of LLMs for Medical Systematic Reviews Hye Sun Yun Iain J. Marshall T. Trikalinos Byron C. Wallace 26 17 0 19 May 2023
MatSci-NLP: Evaluating Scientific Language Models on Materials Science Language Tasks Using Text-to-Schema Modeling Yurun Song Santiago Miret Bang Liu 33 30 0 14 May 2023
Privacy-Preserving Prompt Tuning for Large Language Model Services Yansong Li Zhixing Tan Yang Liu SILM VLM 53 64 0 10 May 2023
GersteinLab at MEDIQA-Chat 2023: Clinical Note Summarization from Doctor-Patient Conversations through Fine-tuning and In-context Learning Xiangru Tang Andrew Tran Jeffrey Tan Mark B. Gerstein 29 7 0 08 May 2023
SANTA: Separate Strategies for Inaccurate and Incomplete Annotation Noise in Distantly-Supervised Named Entity Recognition Shuzheng Si Zefan Cai Shuang Zeng Guoqiang Feng Jiaxing Lin Baobao Chang 37 5 0 06 May 2023
From Zero to Hero: Harnessing Transformers for Biomedical Named Entity Recognition in Zero- and Few-shot Contexts Milos Kosprdic Nikola Prodanović Adela Ljajić Bojana Bašaragin Nikola Milosevic MedIm 23 5 0 05 May 2023
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text K. D. Baksi Vatsala Pokhrel Bhusan K. Kuntal S. Mande 21 0 0 27 Apr 2023
FineEHR: Refine Clinical Note Representations to Improve Mortality Prediction Jun Wu Xuesong Ye Chengjie Mou Weina Dai 64 18 0 24 Apr 2023
BERT Based Clinical Knowledge Extraction for Biomedical Knowledge Graph Construction and Analysis Ayoub Harnoune Maryem Rhanoui M. Mikram Siham Yousfi Zineb Elkaimbillah B. E. Asri 16 77 0 21 Apr 2023
A Biomedical Entity Extraction Pipeline for Oncology Health Records in Portuguese Hugo Sousa Arian Pasquali A. Jorge Catarina Sousa Santos Mário Amorim Lopes 28 1 0 18 Apr 2023
An Iterative Optimizing Framework for Radiology Report Summarization with ChatGPT Chong Ma Zihao Wu Jiaqi Wang Shaochen Xu Yaonai Wei ... Tuo Zhang Dajiang Zhu Dinggang Shen Tianming Liu Xiang Li MedIm LM&MA 47 97 0 17 Apr 2023
AGI for Agriculture Guoyu Lu Sheng Li Gengchen Mai Jin Sun Dajiang Zhu ... R. Xu Daniel Petti Changying Li Tianming Liu Changying Li AI4CE 48 17 0 12 Apr 2023
FrenchMedMCQA: A French Multiple-Choice Question Answering Dataset for Medical domain Yanis Labrak Adrien Bazoge Richard Dufour Mickael Rouvier Emmanuel Morin B. Daille P. Gourraud 27 30 0 09 Apr 2023
Are Large Language Models Ready for Healthcare? A Comparative Study on Clinical Language Understanding Yuqing Wang Yun Zhao Linda R. Petzold AI4MH LM&MA ELM 35 51 0 09 Apr 2023
DrBERT: A Robust Pre-trained Model in French for Biomedical and Clinical domains Yanis Labrak Adrien Bazoge Richard Dufour Mickael Rouvier Emmanuel Morin B. Daille P. Gourraud LM&MA 25 54 0 03 Apr 2023
GPT-4 can pass the Korean National Licensing Examination for Korean Medicine Doctors Dongyeop Jang Tae-Rim Yun Choong-Yeol Lee Young-Kyu Kwon Chang-Eop Kim ELM LM&MA 35 26 0 31 Mar 2023
BloombergGPT: A Large Language Model for Finance Shijie Wu Ozan Irsoy Steven Lu Vadim Dabravolski Mark Dredze Sebastian Gehrmann P. Kambadur David S. Rosenberg Gideon Mann AIFin 99 793 0 30 Mar 2023
oBERTa: Improving Sparse Transfer Learning via improved initialization, distillation, and pruning regimes Daniel Fernando Campos Alexandre Marques Mark Kurtz Chengxiang Zhai VLM AAML 13 2 0 30 Mar 2023
Carolina: a General Corpus of Contemporary Brazilian Portuguese with Provenance, Typology and Versioning Information MariaJose Crespo Maria Lina Rocha Mariana Sturzeneker F. Serras Guilherme Lamartine de Mello ... Mariana M. Silva Marcelo Finger Maria Clara Paixão de Sousa Cristiane Namiuti Vanessa Martins do Monte 14 3 0 28 Mar 2023
An Information Extraction Study: Take In Mind the Tokenization! Christos Theodoropoulos Marie-Francine Moens 29 6 0 27 Mar 2023
Lay Text Summarisation Using Natural Language Processing: A Narrative Literature Review Oliver Vinzelberg M. Jenkins Gordon Morison David McMinn Z. Tieges 35 6 0 24 Mar 2023
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy Shan Chen Marco Guevara N. Ramirez Arpi Murray J. Warner Hugo J. W. L. Aerts Timothy A. Miller G. Savova Raymond H. Mak Danielle S. Bitterman 31 12 0 24 Mar 2023
ChatGPT for Shaping the Future of Dentistry: The Potential of Multi-Modal Large Language Model Hanyao Huang Ou Zheng Dongdong Wang Jiayi Yin Zijin Wang ... H. Yin Chuan Xu Renjie Yang Q. Zheng B. Shi MedIm AI4MH AI4CE LM&MA 58 176 0 23 Mar 2023
JaCoText: A Pretrained Model for Java Code-Text Generation Jessica Nayeli López Espejel Mahaman Sanoussi Yahaya Alassan Walid Dahhane E. Ettifouri 37 3 0 22 Mar 2023
GrapeQA: GRaph Augmentation and Pruning to Enhance Question-Answering Dhaval Taunk Lakshya Khanna Pavan Kandru Vasudeva Varma Charu Sharma Makarand Tapaswi 19 22 0 22 Mar 2023
Applying unsupervised keyphrase methods on concepts extracted from discharge sheets Hoda Memarzadeh Nasser Ghadiri Matthias Samwald Maryam Lotfi Shahreza 44 0 0 15 Mar 2023
Generating multiple-choice questions for medical question answering with distractors and cue-masking Damien Sileo Kanimozhi Uma Marie-Francine Moens 43 5 0 13 Mar 2023
Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Review Asim Waqas Aakash Tripathi Ravichandran Ramachandran Paul Stewart Ghulam Rasool AI4CE 42 32 0 11 Mar 2023