3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

21 June 2016

Thomas Brox

Papers citing "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation"

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Title
CT-Realistic Lung Nodule Simulation from 3D Conditional Generative Adversarial Networks for Robust Lung Segmentation D. Jin Ziyue Xu Youbao Tang Adam P. Harrison D. Mollura MedIm 55 185 0 11 Jun 2018
Autoencoders for Multi-Label Prostate MR Segmentation Ard de Gelder Henkjan Huisman 6 6 0 09 Jun 2018
3D FCN Feature Driven Regression Forest-Based Pancreas Localization and Segmentation M. Oda N. Shimizu H. Roth Kenichi Karasawa T. Kitasaka K. Misawa M. Fujiwara Daniel Rueckert K. Mori 11 12 0 08 Jun 2018
Quantitative Phase Imaging and Artificial Intelligence: A Review YoungJu Jo Hyungjoon Cho Sang Yun Lee Gunho Choi Geon Kim Hyun-Seok Min Yongkeun Park 24 154 0 06 Jun 2018
Rethinking Radiology: An Analysis of Different Approaches to BraTS William Bakst Linus Meyer-Teruel Jasdeep Singh 16 2 0 06 Jun 2018
A multi-scale pyramid of 3D fully convolutional networks for abdominal multi-organ segmentation H. Roth Chen Shen H. Oda T. Sugino M. Oda Y. Hayashi K. Misawa K. Mori SSeg 30 83 0 06 Jun 2018
CFCM: Segmentation via Coarse to Fine Context Memory Fausto Milletari Nicola Rieke Maximilian Baust M. Esposito Nassir Navab 31 48 0 04 Jun 2018
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data Yuankai Huo Zhoubing Xu Katherine Aboud P. Parvathaneni Shunxing Bao Camilo Bermudez Susan M. Resnick L. Cutting Bennett A. Landman 22 33 0 01 Jun 2018
Fully Automated Organ Segmentation in Male Pelvic CT Images Anjali Balagopal S. Kazemifar D. Nguyen Mu-Han Lin R. Hannan A. Owrangi Steve B. Jiang 22 119 0 31 May 2018
Multi-region segmentation of bladder cancer structures in MRI with progressive dilated convolutional networks Jose Dolz Xiaopan Xu Jérôme Rony Jing Yuan Yang Liu Eric Granger Christian Desrosiers Xi Zhang Ismail Ben Ayed Hongbing Lu MedIm 12 80 0 28 May 2018
Segmentation of Liver Lesions with Reduced Complexity Deep Models R. Pandey Aswin Vasan A. G. Ramakrishnan SSeg MedIm 25 14 0 23 May 2018
Deep Learning Estimation of Absorbed Dose for Nuclear Medicine Diagnostics Luciano Melodia 8 2 0 23 May 2018
Learning 3D Shape Completion under Weak Supervision David Stutz Andreas Geiger 3DPC SSL 35 106 0 18 May 2018
TractSeg - Fast and accurate white matter tract segmentation Jakob Wasserthal Peter Neher Klaus H. Maier-Hein 11 461 0 18 May 2018
Deep Segmentation and Registration in X-Ray Angiography Video Athanasios Vlontzos K. Mikolajczyk 16 24 0 16 May 2018
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks C. Gros B. Leener A. Badji J. Maranzano Dominique Eden ... J. Doyon T. Shepherd Erik Charlson S. Narayanan Julien Cohen-Adad 25 215 0 16 May 2018
Multi-View Semantic Labeling of 3D Point Clouds for Automated Plant Phenotyping Bernhard Japes Jennifer Mack F. Rist Katja Herzog R. Töpfer Volker Steinhage 3DPC 16 6 0 10 May 2018
Joint Cell Nuclei Detection and Segmentation in Microscopy Images Using 3D Convolutional Networks Sundaresh Ram V. T. Nguyen K. Limesand M. Sabuncu 9 7 0 08 May 2018
Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation Saeid Asgari Taghanaki Yefeng Zheng S. Kevin Zhou Bogdan Georgescu Puneet Sharma Daguang Xu Dorin Comaniciu Ghassan Hamarneh 10 328 0 08 May 2018
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain Larissa Heinrich Jan Funke Constantin Pape Juan Nunez-Iglesias S. Saalfeld 3DV 15 83 0 07 May 2018
Joint CS-MRI Reconstruction and Segmentation with a Unified Deep Network Liyan Sun Zhiwen Fan Yue Huang Xinghao Ding John Paisley 8 60 0 06 May 2018
Adapting Mask-RCNN for Automatic Nucleus Segmentation Jeremiah W. Johnson SSeg 16 156 0 01 May 2018
Interactive Medical Image Segmentation via Point-Based Interaction and Sequential Patch Learning Jinquan Sun Yinghuan Shi Yang Gao Lei Wang Luping Zhou Wanqi Yang D. Shen 19 8 0 27 Apr 2018
Stacked U-Nets: A No-Frills Approach to Natural Image Segmentation Sohil Shah P. Ghosh L. Davis Tom Goldstein SSeg 19 55 0 27 Apr 2018
Abdominal multi-organ segmentation with organ-attention networks and statistical fusion Yan Wang Yuyin Zhou Wei Shen Seyoun Park Elliot K. Fishman Alan Yuille 14 215 0 23 Apr 2018
Select, Attend, and Transfer: Light, Learnable Skip Connections Saeid Asgari Taghanaki A. Bentaieb Anmol Sharma S. Kevin Zhou Yefeng Zheng ... Puneet Sharma Sasa Grbic Zhoubing Xu Dorin Comaniciu Ghassan Hamarneh 28 20 0 14 Apr 2018
Iterative fully convolutional neural networks for automatic vertebra segmentation and identification Nikolas Lessmann Bram van Ginneken P. A. Jong Ivana Išgum 6 212 0 12 Apr 2018
A Recurrent CNN for Automatic Detection and Classification of Coronary Artery Plaque and Stenosis in Coronary CT Angiography M. Zreik R. V. van Hamersvelt J. Wolterink T. Leiner M. Viergever Ivana Isgum 6 217 0 12 Apr 2018
A two-stage 3D Unet framework for multi-class segmentation on full resolution image Chengjia Wang Tom J. MacGillivray G. Macnaught Guang Yang D. Newby SSeg SupR 18 73 0 12 Apr 2018
HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation Jose Dolz Karthik Gopinath Jing Yuan H. Lombaert Christian Desrosiers Ismail ben Ayed 3DH 11 431 0 09 Apr 2018
Training Multi-organ Segmentation Networks with Sample Selection by Relaxed Upper Confident Bound Yan Wang Yuyin Zhou Peng Tang Wei Shen Elliot K. Fishman Alan Yuille OOD SSeg 12 26 0 07 Apr 2018
Semi-Supervised Multi-Organ Segmentation via Deep Multi-Planar Co-Training Yuyin Zhou Yan Wang Peng Tang S. Bai Wei Shen Elliot K. Fishman Alan Yuille 22 129 0 07 Apr 2018
A Segmentation-aware Deep Fusion Network for Compressed Sensing MRI Zhiwen Fan Liyan Sun Xinghao Ding Yue Huang C. Cai John Paisley MedIm 30 27 0 04 Apr 2018
Bridging the Gap Between 2D and 3D Organ Segmentation with Volumetric Fusion Net Yingda Xia Lingxi Xie Fengze Liu Zhuotun Zhu Elliot K. Fishman Alan Yuille 3DPC MedIm 27 37 0 02 Apr 2018
Pancreas Segmentation in CT and MRI Images via Domain Specific Network Designing and Recurrent Neural Contextual Learning Jinzheng Cai Le Lu Fuyong Xing L. Yang MedIm 34 36 0 30 Mar 2018
Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection Seyed Raein Hashemi Seyed Sadegh Mohseni Salehi Deniz Erdogmus S. Prabhu Simon K. Warfield Ali Gholipour MedIm 18 163 0 28 Mar 2018
Point Convolutional Neural Networks by Extension Operators Matan Atzmon Haggai Maron Y. Lipman 3DPC 14 536 0 27 Mar 2018
DeepVesselNet: Vessel Segmentation, Centerline Prediction, and Bifurcation Detection in 3-D Angiographic Volumes Giles Tetteh Velizar Efremov Nils D. Forkert Matthias Schneider Jan Kirschke B. Weber C. Zimmer Marie Piraud Bjoern H. Menze MedIm 3DPC 28 211 0 25 Mar 2018
Deep learning and its application to medical image segmentation H. Roth Chen Shen H. Oda M. Oda Y. Hayashi K. Misawa K. Mori MedIm SSeg 48 114 0 23 Mar 2018
TOMAAT: volumetric medical image analysis as a cloud service Fausto Milletari Johann Frei Seyed-Ahmad Ahmadi 8 5 0 19 Mar 2018
Semantic Segmentation of Pathological Lung Tissue with Dilated Fully Convolutional Networks M. Anthimopoulos Stergios Christodoulidis L. Ebner Thomas Geiser Andreas Christe S. Mougiakakou 14 113 0 16 Mar 2018
An application of cascaded 3D fully convolutional networks for medical image segmentation H. Roth H. Oda Xiangrong Zhou N. Shimizu Ying Yang Y. Hayashi M. Oda M. Fujiwara K. Misawa K. Mori 14 273 0 14 Mar 2018
Development and Validation of Deep Learning Algorithms for Detection of Critical Findings in Head CT Scans Sasank Chilamkurthy Rohit Ghosh Swetha Tanamala Mustafa Biviji N. Campeau V. Venugopal V. Mahajan Pooja Rao Prashant Warier 13 103 0 13 Mar 2018
A Deep Learning Approach for Pose Estimation from Volumetric OCT Data N. Gessert M. Schlüter Alexander Schlaefer 19 30 0 10 Mar 2018
Calcium Removal From Cardiac CT Images Using Deep Convolutional Neural Network Siming Yan Feng Shi Yuhua Chen D. Dey Sang-Eun Lee H. Chang Debiao Li Yibin Xie MedIm 24 7 0 20 Feb 2018
Recurrent Residual Convolutional Neural Network based on U-Net (R2U-Net) for Medical Image Segmentation Md. Zahangir Alom Mahmudul Hasan C. Yakopcic T. Taha V. Asari SSeg 34 1,003 0 20 Feb 2018
3D Regression Neural Network for the Quantification of Enlarged Perivascular Spaces in Brain MRI Florian Dubost H. Adams Gerda Bortsova M. Ikram W. Niessen Meike W. Vernooij Marleen de Bruijne 15 54 0 16 Feb 2018
Joint Learning for Pulmonary Nodule Segmentation, Attributes and Malignancy Prediction Botong Wu Zhen Zhou Jianwei Wang Yizhou Wang 20 119 0 10 Feb 2018
Deep learning in radiology: an overview of the concepts and a survey of the state of the art Maciej Mazurowski Mateusz Buda Ashirbani Saha Mustafa R. Bashir MedIm AI4CE 21 429 0 10 Feb 2018
Multiparametric Deep Learning Tissue Signatures for a Radiological Biomarker of Breast Cancer: Preliminary Results V. Parekh K. Macura S. Harvey I. Kamel R. Khouli D. Bluemke M. Jacobs MedIm 29 35 0 10 Feb 2018