3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

21 June 2016

Thomas Brox

Papers citing "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation"

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Title
Deep Learning based Retinal OCT Segmentation M. Pekala Neil J. Joshi D. E. Freund N. Bressler D. DeBuc Philippe Burlina 26 168 0 29 Jan 2018
Deep LOGISMOS: Deep Learning Graph-based 3D Segmentation of Pancreatic Tumors on CT scans Zhihui Guo Ling Zhang Le Lu M. Bagheri Ronald M. Summers Milan Sonka Jianhua Yao 34 49 0 25 Jan 2018
Three Dimensional Fluorescence Microscopy Image Synthesis and Segmentation Chichen Fu Soonam Lee D. J. Ho Shuo Han P. Salama K. Dunn Edward J. Delp 3DV MedIm 14 63 0 22 Jan 2018
Quantitative analysis of patch-based fully convolutional neural networks for tissue segmentation on brain magnetic resonance imaging J. Bernal Kaisar Kushibar Mariano Cabezas Sergi Valverde A. Oliver Xavier Llado 3DV 11 38 0 19 Jan 2018
On the influence of Dice loss function in multi-class organ segmentation of abdominal CT using 3D fully convolutional networks Chen Shen H. Roth H. Oda M. Oda Y. Hayashi K. Misawa K. Mori 3DPC SSeg 21 47 0 18 Jan 2018
Student Beats the Teacher: Deep Neural Networks for Lateral Ventricles Segmentation in Brain MR Mohsen Ghafoorian Jonas Teuwen R. Manniesing F.‐E. Leeuw Bram van Ginneken N. Karssemeijer B. Platel 28 17 0 15 Jan 2018
End-to-end detection-segmentation network with ROI convolution Zichen Zhang Min Tang Dana Cobzas D. Zonoobi Martin Jägersand Jacob L. Jaremko SSeg ObjD 16 22 0 08 Jan 2018
Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models Mohammad Haft-Javaherian Linjing Fang V. Muse C. Schaffer N. Nishimura M. Sabuncu 39 72 0 03 Jan 2018
Partial Labeled Gastric Tumor Segmentation via patch-based Reiterative Learning Yang Nan Gianmarc Coppola Q. Liang Kunlin Zou Wei Sun Dan Zhang Yaonan Wang Guanzhen Yu 23 7 0 20 Dec 2017
Automatic Renal Segmentation in DCE-MRI using Convolutional Neural Networks M. Haghighi Simon K. Warfield Sila Kurugol MedIm 30 36 0 19 Dec 2017
Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation Jose Dolz Christian Desrosiers Li Wang Jing Yuan D. Shen Ismail Ben Ayed 3DV 45 113 0 14 Dec 2017
Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review J. Bernal Kaisar Kushibar Daniel S. Asfaw Sergi Valverde A. Oliver Robert Martí Xavier Llado 19 349 0 11 Dec 2017
Beyond the Pixel-Wise Loss for Topology-Aware Delineation Agata Mosinska Pablo Márquez-Neila Mateusz Koziñski Pascal Fua 3DV 32 231 0 06 Dec 2017
Fully Automatic Segmentation of Lumbar Vertebrae from CT Images using Cascaded 3D Fully Convolutional Networks Rens Janssens G. Zeng Guoyan Zheng 19 94 0 05 Dec 2017
InverseNet: Solving Inverse Problems with Splitting Networks Kai Fan Qinglai Wei Wenlin Wang Amit Chakraborty Katherine A. Heller 27 8 0 01 Dec 2017
A 3D Coarse-to-Fine Framework for Volumetric Medical Image Segmentation Zhuotun Zhu Yingda Xia Wei-Che Shen Elliot K. Fishman Alan Yuille 19 133 0 01 Dec 2017
3D Semantic Segmentation with Submanifold Sparse Convolutional Networks Benjamin Graham Martin Engelcke L. V. D. van der Maaten 3DPC 19 1,496 0 28 Nov 2017
Multi-stream 3D FCN with Multi-scale Deep Supervision for Multi-modality Isointense Infant Brain MR Image Segmentation G. Zeng Guoyan Zheng 14 42 0 28 Nov 2017
Visual Feature Attribution using Wasserstein GANs Christian F. Baumgartner Lisa M. Koch K. Tezcan Jia Xi Ang E. Konukoglu GAN MedIm 24 145 0 24 Nov 2017
3D Anisotropic Hybrid Network: Transferring Convolutional Features from 2D Images to 3D Anisotropic Volumes Siqi Liu Daguang Xu S. Kevin Zhou T. Mertelmeier Julia Wicklein A. Jerebko Sasa Grbic Olivier Pauly Weidong (Tom) Cai Dorin Comaniciu MedIm 21 146 0 23 Nov 2017
Evaluate the Malignancy of Pulmonary Nodules Using the 3D Deep Leaky Noisy-or Network Fangzhou Liao Ming Liang Zhe Li Xiaolin Hu Sen Song MedIm 19 417 0 22 Nov 2017
Segmenting Brain Tumors with Symmetry Hejia Zhang Xia Zhu Theodore L. Willke 22 10 0 17 Nov 2017
Towards dense volumetric pancreas segmentation in CT using 3D fully convolutional networks H. Roth M. Oda N. Shimizu H. Oda Y. Hayashi T. Kitasaka M. Fujiwara K. Misawa K. Mori MedIm 11 45 0 17 Nov 2017
3D Randomized Connection Network with Graph-based Label Inference Siqi Bao Pei Wang Tony C. W. Mok Albert C. S. Chung 3DV 28 3 0 11 Nov 2017
Almost instant brain atlas segmentation for large-scale studies A. Fedorov Eswar Damaraju Vince D. Calhoun Sergey Plis 19 13 0 01 Nov 2017
Segmentation-by-Detection: A Cascade Network for Volumetric Medical Image Segmentation Min Tang Zichen Zhang Dana Cobzas Martin Jägersand Jacob L. Jaremko 37 22 0 31 Oct 2017
Deep Learning and Conditional Random Fields-based Depth Estimation and Topographical Reconstruction from Conventional Endoscopy Faisal Mahmood Nicholas J. Durr MedIm 35 142 0 30 Oct 2017
SEGMENT3D: A Web-based Application for Collaborative Segmentation of 3D images used in the Shoot Apical Meristem T. V. Spina Johannes Stegmaier A. X. Falcão E. Meyerowitz Alexandre Cunha 19 9 0 26 Oct 2017
Real-Time Automatic Fetal Brain Extraction in Fetal MRI by Deep Learning S. Salehi Seyed Raein Hashemi C. Velasco-Annis Abdelhakim Ouaalam J. Estroff Deniz Erdogmus Simon K. Warfield Ali Gholipour 14 87 0 25 Oct 2017
Towards Automatic Abdominal Multi-Organ Segmentation in Dual Energy CT using Cascaded 3D Fully Convolutional Network Shuqing Chen H. Roth Sabrina Dorn M. May Alexander Cavallaro M. Lell M. Kachelriess H. Oda K. Mori Andreas Maier 11 25 0 15 Oct 2017
Single-image Tomography: 3D Volumes from 2D Cranial X-Rays Philipp Henzler V. Rasche Timo Ropinski Tobias Ritschel MedIm 14 13 0 13 Oct 2017
Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using Fully Convolutional Neural Network Donghuan Lu M. Heisler Sieun Lee G. Ding M. Sarunic M. Beg 26 31 0 13 Oct 2017
Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning Guotai Wang Wenqi Li Maria A. Zuluaga R. Pratt P. Patel ... T. Doel A. David Jan Deprest Sebastien Ourselin Tom Kamiel Magda Vercauteren 33 686 0 11 Oct 2017
H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes Xiaomeng Li Hao Chen Xiaojuan Qi Qi Dou Chi-Wing Fu Pheng Ann Heng 36 101 0 21 Sep 2017
An Exploration of 2D and 3D Deep Learning Techniques for Cardiac MR Image Segmentation Christian F. Baumgartner Lisa M. Koch Marc Pollefeys E. Konukoglu 14 246 0 13 Sep 2017
NiftyNet: a deep-learning platform for medical imaging Eli Gibson Wenqi Li Carole Sudre Lucas Fidon D. I. Shakir ... Marc Modat D. Barratt Sébastien Ourselin M. Jorge Cardoso Tom Vercauteren 25 526 0 11 Sep 2017
3D Densely Convolutional Networks for Volumetric Segmentation T. Bui Jitae Shin Taesup Moon 3DV 16 74 0 11 Sep 2017
Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction Jan Funke Fabian Tschopp William Grisaitis Arlo Sheridan Chandan Singh S. Saalfeld Srinivas C. Turaga 3DV 20 27 0 09 Sep 2017
Sequential 3D U-Nets for Biologically-Informed Brain Tumor Segmentation Andrew Beers Ken Chang James M. Brown Emmett Sartor C. P. Mammen Elizabeth R Gerstner Bruce Rosen Jayashree Kalpathy-Cramer 11 49 0 09 Sep 2017
Medical Image Analysis using Convolutional Neural Networks: A Review Syed Muhammad Anwar Muhammad Majid A. Qayyum Muhammad Awais M. Alnowami Muhammad Khurram Khan MedIm 8 1,036 0 04 Sep 2017
Compressed Sensing MRI Reconstruction using a Generative Adversarial Network with a Cyclic Loss Tran Minh Quan Thanh Nguyen-Duc W. Jeong GAN MedIm 32 539 0 03 Sep 2017
Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 14 480 0 01 Sep 2017
Texture and Structure Incorporated ScatterNet Hybrid Deep Learning Network (TS-SHDL) For Brain Matter Segmentation Amarjot Singh Devamanyu Hazarika Aniruddha Bhattacharya 14 11 0 30 Aug 2017
Recent Advances in the Applications of Convolutional Neural Networks to Medical Image Contour Detection Zizhao Zhang Fuyong Xing H. Su Xiaoshuang Shi L. Yang AAML 38 13 0 24 Aug 2017
Deep Learning for Medical Image Analysis Mina Rezaei Haojin Yang Christoph Meinel 22 2,031 0 17 Aug 2017
Automatic 3D Cardiovascular MR Segmentation with Densely-Connected Volumetric ConvNets Lequan Yu Jie-Zhi Cheng Qi Dou Xin Yang Hao Chen Jing Qin Pheng-Ann Heng 19 220 0 02 Aug 2017
2D-3D Fully Convolutional Neural Networks for Cardiac MR Segmentation Jay Patravali Shubham Jain Sasank Chilamkurthy 3DV 11 114 0 31 Jul 2017
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks Aleksander Klibisz Derek C. Rose Matthew R. Eicholtz J. Blundon Stanislav S Zakharenko 32 38 0 19 Jul 2017
Pathological OCT Retinal Layer Segmentation using Branch Residual U-shape Networks S. Apostolopoulos Sandro De Zanet Carlos Ciller Sebastian Wolf Raphael Sznitman 25 87 0 16 Jul 2017
Deep Semantic Segmentation for Automated Driving: Taxonomy, Roadmap and Challenges Mennatullah Siam Sara Elkerdawy Martin Jägersand S. Yogamani 122 166 0 08 Jul 2017