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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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Title
Distantly Supervised Relation Extraction in Federated Settings Dianbo Sui Yubo Chen Kang Liu Jun Zhao FedML 71 11 0 12 Aug 2020
Interpretable Multi-Step Reasoning with Knowledge Extraction on Complex Healthcare Question Answering Ye Liu Shaika Chowdhury Chenwei Zhang Cornelia Caragea Philip S. Yu 69 13 0 06 Aug 2020
Ontology-driven weak supervision for clinical entity classification in electronic health records Jason Alan Fries E. Steinberg S. Khattar Scott L. Fleming J. Posada A. Callahan N. Shah 86 73 0 05 Aug 2020
Antibody Watch: Text Mining Antibody Specificity from the Literature Chun-Nan Hsu Chia-Hui Chang Thamolwan Poopradubsil Amanda Lo Karen A. William Ko-Wei Lin A. Bandrowski I. B. Ozyurt J. Grethe M. Martone 19 3 0 05 Aug 2020
Effective Transfer Learning for Identifying Similar Questions: Matching User Questions to COVID-19 FAQs Clara H. McCreery Namit Katariya A. Kannan Manish Chablani X. Amatriain MedIm OOD 57 76 0 04 Aug 2020
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Yu Gu Robert Tinn Hao Cheng Michael R. Lucas Naoto Usuyama Xiaodong Liu Tristan Naumann Jianfeng Gao Hoifung Poon LM&MA AI4CE 181 1,794 0 31 Jul 2020
COVID-19 therapy target discovery with context-aware literature mining Matej Martinc Blaž Škrlj S. Pirkmajer Nada Lavrac B. Cestnik Martin Marzidovsek Senja Pollak 44 9 0 30 Jul 2020
Biomedical and Clinical English Model Packages in the Stanza Python NLP Library Yuhao Zhang Yuhui Zhang Peng Qi Christopher D. Manning C. Langlotz 71 14 0 29 Jul 2020
Multi-Perspective Semantic Information Retrieval in the Biomedical Domain Samarth Rawal 18 3 0 17 Jul 2020
Green Algorithms: Quantifying the carbon footprint of computation Loïc Lannelongue Jason Grealey Michael Inouye 58 19 0 15 Jul 2020
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines Florian Borchert Christina Lohr Luise Modersohn T. Langer M. Follmann J. Sachs U. Hahn M. Schapranow LM&MA AI4MH 59 28 0 13 Jul 2020
Searching Scientific Literature for Answers on COVID-19 Questions Vincent Nguyen Maciej Rybiński Sarvnaz Karimi Zhenchang Xing 61 3 0 06 Jul 2020
Robust Prediction of Punctuation and Truecasing for Medical ASR Monica Sunkara S. Ronanki Kalpit Dixit S. Bodapati Katrin Kirchhoff 54 33 0 04 Jul 2020
Coronavirus Knowledge Graph: A Case Study Chongyan Chen Islam Akef Ebeid Yi Bu Ying Ding 33 21 0 04 Jul 2020
COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation Qingyun Wang Manling Li Xuan Wang Nikolaus Nova Parulian G. Han ... Ahmed Elsayed Martha Palmer Clare Voss Cynthia Schneider Boyan A. Onyshkevych 60 119 0 01 Jul 2020
Transferability of Natural Language Inference to Biomedical Question Answering Minbyul Jeong Mujeen Sung Gangwoo Kim Donghyeon Kim Wonjin Yoon J. Yoo Jaewoo Kang 80 40 0 01 Jul 2020
SE3M: A Model for Software Effort Estimation Using Pre-trained Embedding Models E. M. D. B. Fávero Dalcimar Casanova Andrey R. Pimentel 34 12 0 30 Jun 2020
Classification of cancer pathology reports: a large-scale comparative study S. Martina L. Ventura P. Frasconi 121 11 0 29 Jun 2020
Answering Questions on COVID-19 in Real-Time Jinhyuk Lee Sean S. Yi Minbyul Jeong Mujeen Sung Wonjin Yoon Yonghwa Choi Miyoung Ko Jaewoo Kang 80 43 0 29 Jun 2020
Automating Text Naturalness Evaluation of NLG Systems Erion cCano Ondrej Bojar 20 0 0 23 Jun 2020
A Deep Learning Pipeline for Patient Diagnosis Prediction Using Electronic Health Records Leopold Franz Yash Raj Shrestha B. Paudel OOD 70 25 0 23 Jun 2020
NLPContributions: An Annotation Scheme for Machine Reading of Scholarly Contributions in Natural Language Processing Literature Jennifer D'Souza Sören Auer 44 16 0 23 Jun 2020
Clinical Predictive Keyboard using Statistical and Neural Language Modeling John Pavlopoulos P. Papapetrou 13 0 0 22 Jun 2020
Students Need More Attention: BERT-based AttentionModel for Small Data with Application to AutomaticPatient Message Triage Shijing Si Rui Wang Jedrek Wosik Hao Zhang D. Dov Guoyin Wang Ricardo Henao Lawrence Carin 62 26 0 22 Jun 2020
A Qualitative Evaluation of Language Models on Automatic Question-Answering for COVID-19 David Oniani Yanshan Wang 62 32 0 19 Jun 2020
Infinite attention: NNGP and NTK for deep attention networks Jiri Hron Yasaman Bahri Jascha Narain Sohl-Dickstein Roman Novak 60 116 0 18 Jun 2020
Towards User Friendly Medication Mapping Using Entity-Boosted Two-Tower Neural Network Shaoqing Yuan Parminder Bhatia B. Celikkaya Haiyang Liu Kyunghwan Choi 36 1 0 17 Jun 2020
Results of the seventh edition of the BioASQ Challenge A. Nentidis K. Bougiatiotis Anastasia Krithara George Giannakopoulos 94 62 0 16 Jun 2020
PERL: Pivot-based Domain Adaptation for Pre-trained Deep Contextualized Embedding Models Eyal Ben-David Carmel Rabinovitz Roi Reichart SSL 110 63 0 16 Jun 2020
Document Classification for COVID-19 Literature Bernal Jiménez Gutiérrez Juncheng Zeng Dongdong Zhang Ping Zhang Yu-Chuan Su OOD 67 32 0 15 Jun 2020
FinBERT: A Pretrained Language Model for Financial Communications Yi Yang Mark Christopher Siy Uy Allen H Huang AIFin AI4CE 85 238 0 15 Jun 2020
Information Extraction of Clinical Trial Eligibility Criteria Yitong Tseo M. Salkola A. Mohamed Anuj Kumar F. Abnousi FaML 59 26 0 12 Jun 2020
Extensive Error Analysis and a Learning-Based Evaluation of Medical Entity Recognition Systems to Approximate User Experience I. Nejadgholi Kathleen C. Fraser Berry de Bruijn 42 14 0 09 Jun 2020
Auxiliary Signal-Guided Knowledge Encoder-Decoder for Medical Report Generation Mingjie Li Fuyu Wang Xiaojun Chang Xiaodan Liang MedIm 86 106 0 06 Jun 2020
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature Chaoran Cheng Fei Tan Zhi Wei 74 7 0 05 Jun 2020
Neural Unsupervised Domain Adaptation in NLP---A Survey Alan Ramponi Barbara Plank OOD 134 259 0 31 May 2020
CausaLM: Causal Model Explanation Through Counterfactual Language Models Amir Feder Nadav Oved Uri Shalit Roi Reichart CML LRM 161 162 0 27 May 2020
BERT-XML: Large Scale Automated ICD Coding Using BERT Pretraining Zachariah Zhang Jingshu Liu N. Razavian 64 74 0 26 May 2020
A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction Saadullah Amin K. Dunfield Anna Vechkaeva G. Neumann NoLa MedIm 39 14 0 26 May 2020
Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction L. Rasmy Yang Xiang Z. Xie Cui Tao Degui Zhi AI4MH LM&MA 101 702 0 22 May 2020
Extracting Daily Dosage from Medication Instructions in EHRs: An Automated Approach and Lessons Learned Diwakar Mahajan Jennifer J. Liang Ching-Huei Tsou 23 9 0 21 May 2020
Trialstreamer: Mapping and Browsing Medical Evidence in Real-Time Benjamin E. Nye A. Nenkova Iain J. Marshall Byron C. Wallace 46 25 0 21 May 2020
BERTweet: A pre-trained language model for English Tweets Dat Quoc Nguyen Thanh Tien Vu A. Nguyen VLM 110 926 0 20 May 2020
COVID-Twitter-BERT: A Natural Language Processing Model to Analyse COVID-19 Content on Twitter Martin Müller M. Salathé P. Kummervold VLM MedIm AI4MH 91 361 0 15 May 2020
Pre-training technique to localize medical BERT and enhance biomedical BERT Shoya Wada Toshihiro Takeda S. Manabe Shozo Konishi Jun Kamohara Y. Matsumura LM&MA 61 12 0 14 May 2020
Entity-Enriched Neural Models for Clinical Question Answering Bhanu Pratap Singh Rawat W. Weng So Yeon Min Preethi Raghavan Peter Szolovits 76 18 0 13 May 2020
Detecting Adverse Drug Reactions from Twitter through Domain-Specific Preprocessing and BERT Ensembling Amy Breden L. Moore 46 13 0 11 May 2020
Comparative Analysis of Text Classification Approaches in Electronic Health Records Aurelie Mascio Z. Kraljevic D. Bean Richard J. B. Dobson Robert Stewart R. Bendayan A. Roberts 83 47 0 08 May 2020
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining Yifan Peng Qingyu Chen Zhiyong Lu 84 116 0 06 May 2020
CAiRE-COVID: A Question Answering and Query-focused Multi-Document Summarization System for COVID-19 Scholarly Information Management Dan Su Yan Xu Tiezheng Yu Farhad Bin Siddique Elham J. Barezi Pascale Fung RALM 39 31 0 04 May 2020