Publicly Available Clinical BERT Embeddings

6 April 2019

Matthew B. A. McDermott

AI4MH

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Papers citing "Publicly Available Clinical BERT Embeddings"

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Title
General-Purpose Retrieval-Enhanced Medical Prediction Model Using Near-Infinite History Junu Kim Chaeeun Shim Bosco Seong Kyu Yang Chami Im Sung Yoon Lim Han-Gil Jeong Edward Choi 36 8 0 31 Oct 2023
Keyword-optimized Template Insertion for Clinical Information Extraction via Prompt-based Learning Eugenia Alleva Isotta Landi Leslee J. Shaw Erwin P. Böttinger Thomas J Fuchs I. Ensari 23 2 0 31 Oct 2023
BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing Hieu Tran Zhichao Yang Zonghai Yao Hong-ye Yu ALM LM&MA 40 23 0 30 Oct 2023
S2F-NER: Exploring Sequence-to-Forest Generation for Complex Entity Recognition Yongxiu Xu Heyan Huang Yue Hu 21 0 0 29 Oct 2023
GeoLM: Empowering Language Models for Geospatially Grounded Language Understanding Zekun Li Wenxuan Zhou Yao-Yi Chiang Muhao Chen SyDa 36 26 0 23 Oct 2023
Exploring the Impact of Corpus Diversity on Financial Pretrained Language Models Jaeyoung Choe Keonwoong Noh Nayeon Kim Seyun Ahn Woohwan Jung 25 3 0 20 Oct 2023
CXR-CLIP: Toward Large Scale Chest X-ray Language-Image Pre-training Kihyun You Jawook Gu Jiyeon Ham Beomhee Park Jiho Kim Eun K. Hong Woonhyuk Baek Byungseok Roh CLIP VLM 26 59 0 20 Oct 2023
CLIFT: Analysing Natural Distribution Shift on Question Answering Models in Clinical Domain Ankit Pal 19 2 0 19 Oct 2023
A Predictive Factor Analysis of Social Biases and Task-Performance in Pretrained Masked Language Models Yi Zhou Jose Camacho-Collados Danushka Bollegala 81 6 0 19 Oct 2023
Data Augmentations for Improved (Large) Language Model Generalization Amir Feder Yoav Wald Claudia Shi Suchi Saria David M. Blei OOD CML 32 7 0 19 Oct 2023
Hierarchical Pretraining on Multimodal Electronic Health Records Xiaochen Wang Junyu Luo Jiaqi Wang Ziyi Yin Suhan Cui Yuan Zhong Yaqing Wang Fenglong Ma 39 5 0 11 Oct 2023
IMITATE: Clinical Prior Guided Hierarchical Vision-Language Pre-training Che Liu Sibo Cheng Miaojing Shi Anand Shah Wenjia Bai Rossella Arcucci 24 26 0 11 Oct 2023
On the Impact of Cross-Domain Data on German Language Models Amin Dada Aokun Chen C.A.I. Peng Kaleb E. Smith Ahmad Idrissi-Yaghir ... Daniel Truhn Jan Egger Jiang Bian Jens Kleesiek Yonghui Wu 19 4 0 11 Oct 2023
Towards Mitigating Hallucination in Large Language Models via Self-Reflection Ziwei Ji Tiezheng Yu Yan Xu Nayeon Lee Etsuko Ishii Pascale Fung HILM 11 57 0 10 Oct 2023
A Comprehensive Evaluation of Large Language Models on Benchmark Biomedical Text Processing Tasks Fangshuo Liao Md Tahmid Rahman Laskar Cruz Barnum Jimmy X. Huang AI4MH LM&MA 38 68 0 06 Oct 2023
Contextualized Structural Self-supervised Learning for Ontology Matching Zhu Wang 32 2 0 05 Oct 2023
Investigating Alternative Feature Extraction Pipelines For Clinical Note Phenotyping Daniel Neil 14 0 0 05 Oct 2023
Literature Based Discovery (LBD): Towards Hypothesis Generation and Knowledge Discovery in Biomedical Text Mining Balu Bhasuran Gurusamy Murugesan J. Natarajan AI4CE 19 0 0 04 Oct 2023
Clinical Text Deduplication Practices for Efficient Pretraining and Improved Clinical Tasks Isotta Landi Eugenia Alleva Alissa A. Valentine L. Lepow Alexander W. Charney VLM 28 1 0 29 Sep 2023
DRG-LLaMA : Tuning LLaMA Model to Predict Diagnosis-related Group for Hospitalized Patients Hanyin Wang Chufan Gao Christopher Dantona Bryan Hull Jimeng Sun LM&MA 31 57 0 22 Sep 2023
Improving VTE Identification through Adaptive NLP Model Selection and Clinical Expert Rule-based Classifier from Radiology Reports Jamie Deng Yusen Wu Hilary Hayssen Brian Englum A. Kankaria ... Shalini Sahoo John Sorkin B. Lal Yelena Yesha Phuong Nguyen 11 1 0 21 Sep 2023
Not Enough Labeled Data? Just Add Semantics: A Data-Efficient Method for Inferring Online Health Texts Joseph Gatto S. Preum AI4MH 35 1 0 18 Sep 2023
Text Classification of Cancer Clinical Trial Eligibility Criteria Yumeng Yang Soumya Jayaraj Ethan B. Ludmir Kirk Roberts 14 8 0 14 Sep 2023
Multi-dimensional Fusion and Consistency for Semi-supervised Medical Image Segmentation Yixing Lu Zhaoxin Fan Min Xu 27 0 0 12 Sep 2023
Content Reduction, Surprisal and Information Density Estimation for Long Documents Shaoxiong Ji Wei Sun Pekka Marttinen 19 2 0 12 Sep 2023
Retrieving Evidence from EHRs with LLMs: Possibilities and Challenges Hiba Ahsan Denis Jered McInerney Jisoo Kim Christopher Potter Geoffrey S. Young Silvio Amir Byron C. Wallace 27 12 0 08 Sep 2023
ETP: Learning Transferable ECG Representations via ECG-Text Pre-training Che Liu Zhongwei Wan Sibo Cheng Mi Zhang Rossella Arcucci 27 38 0 06 Sep 2023
An Empirical Analysis for Zero-Shot Multi-Label Classification on COVID-19 CT Scans and Uncurated Reports Ethan Dack Lorenzo Brigato Matthew McMurray Matthias Fontanellaz Thomas Frauenfelder ... Thomas Geiser M. Funke-Chambour Andreas Christe L. Ebner Stavroula Mougiakakou 30 2 0 04 Sep 2023
Efficient Social Choice via NLP and Sampling Lior Ashkenazy Nimrod Talmon 13 0 0 04 Sep 2023
Knowledge Graph Embeddings for Multi-Lingual Structured Representations of Radiology Reports Tom van Sonsbeek Xiantong Zhen Marcel Warring 19 0 0 02 Sep 2023
Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes Sunjun Kweon Junu Kim Jiyoun Kim Sujeong Im Eunbyeol Cho ... Seungjin Baek Chang Hoon Han Yoon Bin Jung Yohan Jo Edward Choi LM&MA ELM 15 37 0 01 Sep 2023
Can Prompt Learning Benefit Radiology Report Generation? Jun Wang Lixing Zhu A. Bhalerao Yulan He MedIm 44 2 0 30 Aug 2023
Knowledge-injected Prompt Learning for Chinese Biomedical Entity Normalization Songhua Yang Chenghao Zhang Hongfei Xu Yuxiang Jia MedIm 25 0 0 23 Aug 2023
Feature Extraction Using Deep Generative Models for Bangla Text Classification on a New Comprehensive Dataset Md. Rafi Ur Rashid Samiul Azam M. Jonkman VLM 16 0 0 21 Aug 2023
Software Entity Recognition with Noise-Robust Learning Nguyen Tai Yifeng Di J. Lee Muhao Chen Tianyi Zhang 30 3 0 21 Aug 2023
Utilizing Semantic Textual Similarity for Clinical Survey Data Feature Selection Benjamin C. Warner Ziqi Xu S. Haroutounian Thomas Kannampallil Chenyang Lu 22 2 0 19 Aug 2023
Learning Representations on Logs for AIOps Pranjal Gupta Harshit Kumar Debanjana Kar Karan Bhukar Pooja Aggarwal P. Mohapatra 45 11 0 18 Aug 2023
Factuality Detection using Machine Translation -- a Use Case for German Clinical Text Mohammed Mustafa Ahmed Bin Sumait Aleksandra Gabryszak Leonhard Hennig Roland Roller MedIm HILM 35 0 0 17 Aug 2023
Large Language Models for Granularized Barrett's Esophagus Diagnosis Classification Jenna Kefeli Ali Soroush Courtney J. Diamond H. Zylberberg Benjamin May J. Abrams Chunhua Weng Nicholas Tatonetti 24 2 0 16 Aug 2023
A Trustable LSTM-Autoencoder Network for Cyberbullying Detection on Social Media Using Synthetic Data Mst. Shapna Akter Hossain Shahriar A. Cuzzocrea 16 4 0 15 Aug 2023
Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT Jing Yang Cong Liu Wendy Deng Dangwei Wu Chunhua Weng Yunyun Zhou Kai Wang 27 20 0 11 Aug 2023
Conceptualizing Machine Learning for Dynamic Information Retrieval of Electronic Health Record Notes Sharon Jiang Zejiang Shen Monica Agrawal Barbara D. Lam N. Kurtzman Steven Horng David R Karger David Sontag 22 5 0 09 Aug 2023
RadGraph2: Modeling Disease Progression in Radiology Reports via Hierarchical Information Extraction Sameer Tajdin Khanna Adam Dejl Kibo Yoon Q. H. Truong Han G. Duong Agustina Saenz Pranav Rajpurkar 24 8 0 09 Aug 2023
Bio+Clinical BERT, BERT Base, and CNN Performance Comparison for Predicting Drug-Review Satisfaction Yue Ling 14 2 0 02 Aug 2023
Text-guided Foundation Model Adaptation for Pathological Image Classification Yunkun Zhang Jinglei Gao Mu Zhou Xiaosong Wang Yu Qiao Shaoting Zhang Dequan Wang MedIm 27 47 0 27 Jul 2023
PRIOR: Prototype Representation Joint Learning from Medical Images and Reports Pujin Cheng Li Lin Junyan Lyu Yijin Huang Wenhan Luo Xiaoying Tang MedIm 37 45 0 24 Jul 2023
Leveraging Historical Medical Records as a Proxy via Multimodal Modeling and Visualization to Enrich Medical Diagnostic Learning Ouyang Yang Yuchen Wu He Wang Chenyang Zhang Furui Cheng Chang Jiang Lixia Jin Yuanwu Cao Qu Li 16 6 0 23 Jul 2023
An In-Depth Evaluation of Federated Learning on Biomedical Natural Language Processing Le Peng Gaoxiang Luo Sicheng Zhou Jiandong Chen Rui Zhang Zi-Cheng Xu Ju Sun 28 3 0 20 Jul 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Improving the Reusability of Pre-trained Language Models in Real-world Applications Somayeh Ghanbarzadeh Hamid Palangi Yan-ping Huang R. C. Moreno Hamed Khanpour 12 0 0 19 Jul 2023