Publicly Available Clinical BERT Embeddings

6 April 2019

Matthew B. A. McDermott

AI4MH

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Papers citing "Publicly Available Clinical BERT Embeddings"

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INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning Pablo Romero Lifeng Han Goran Nenadic LM&MA 39 1 0 31 Dec 2024
KG4Diagnosis: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Medical Diagnosis Kaiwen Zuo Yirui Jiang Fan Mo Pietro Lio 88 6 0 22 Dec 2024
DisEmbed: Transforming Disease Understanding through Embeddings Salman Faroz 62 0 0 16 Dec 2024
BioBridge: Unified Bio-Embedding with Bridging Modality in Code-Switched EMR Jangyeong Jeon Sangyeon Cho Dongjoon Lee Changhee Lee Junyeong Kim 75 0 0 16 Dec 2024
NoteContrast: Contrastive Language-Diagnostic Pretraining for Medical Text Prajwal Kailas Max Homilius Rahul C. Deo Calum A. MacRae 116 0 0 16 Dec 2024
Structured Extraction of Real World Medical Knowledge using LLMs for Summarization and Search Edward Kim Manil Shrestha Richard Foty Tom DeLay Vicki Seyfert-Margolis 84 1 0 16 Dec 2024
Are You Doubtful? Oh, It Might Be Difficult Then! Exploring the Use of Model Uncertainty for Question Difficulty Estimation Leonidas Zotos H. Rijn Malvina Nissim 75 0 0 16 Dec 2024
MedG-KRP: Medical Graph Knowledge Representation Probing Gabriel R. Rosenbaum L. Jiang Ivaxi Sheth Jaden Stryker Anton Alyakin ... Mustafa Nasir-Moin Jan Moritz Niehues Karl L. Sangwon Eunice Yang Eric Karl Oermann AI4MH 77 0 0 14 Dec 2024
Large Language Models for Medical Forecasting -- Foresight 2 Z. Kraljevic Joshua Au Yeung D. Bean James T. Teo Richard J. B. Dobson LM&MA 84 0 0 14 Dec 2024
Adapting Large Language Models to Log Analysis with Interpretable Domain Knowledge Yuhe Ji Yilun Liu Feiyu Yao Minggui He Shimin Tao ... Xinhua Yang Weibin Meng Yuming Xie Boxing Chen Hao Yang 92 3 0 02 Dec 2024
Fairness at Every Intersection: Uncovering and Mitigating Intersectional Biases in Multimodal Clinical Predictions Resmi Ramachandranpillai Kishore Sampath Ayaazuddin Mohammad Malihe Alikhani 54 1 0 30 Nov 2024
Integrating Social Determinants of Health into Knowledge Graphs: Evaluating Prediction Bias and Fairness in Healthcare Tianqi Shang Weiqing He Tianlong Chen Ying Ding Huanmei Wu Kaixiong Zhou Li Shen 64 0 0 29 Nov 2024
Rephrasing Electronic Health Records for Pretraining Clinical Language Models Jinghui Liu Anthony N. Nguyen SyDa LM&MA 80 0 0 28 Nov 2024
Can bidirectional encoder become the ultimate winner for downstream applications of foundation models? Lewen Yang Xuanyu Zhou Juao Fan Xinyi Xie Shengxin Zhu AI4CE 64 0 0 27 Nov 2024
Learning Predictive Checklists with Probabilistic Logic Programming Yukti Makhija E. Brouwer Rahul G. Krishnan 74 0 0 25 Nov 2024
Leveraging Multimodal Models for Enhanced Neuroimaging Diagnostics in Alzheimer's Disease Francesco Chiumento Mingming Liu LM&MA 50 0 0 12 Nov 2024
Greenback Bears and Fiscal Hawks: Finance is a Jungle and Text Embeddings Must Adapt Peter Anderson Mano Vikash Janardhanan Jason He Wei Cheng Charlie Flanagan RALM 45 3 0 11 Nov 2024
Medical Adaptation of Large Language and Vision-Language Models: Are We Making Progress? Daniel P. Jeong Saurabh Garg Zachary Chase Lipton Michael Oberst LM&MA VLM ELM 39 9 0 06 Nov 2024
Controlling for Unobserved Confounding with Large Language Model Classification of Patient Smoking Status Samuel Lee Zach Wood-Doughty CML 50 0 0 05 Nov 2024
TriG-NER: Triplet-Grid Framework for Discontinuous Named Entity Recognition R. Cabral Soyeon Caren Han Areej Alhassan R. Batista-Navarro Goran Nenadic Josiah Poon 36 0 0 04 Nov 2024
FEET: A Framework for Evaluating Embedding Techniques Simon A. Lee John Lee Jeffrey N. Chiang 42 3 0 02 Nov 2024
Deep Insights into Cognitive Decline: A Survey of Leveraging Non-Intrusive Modalities with Deep Learning Techniques David Ortiz-Perez Manuel Benavent-Lledo José García Rodríguez David Tomás M. Flores Vizcaya-Moreno 39 0 0 24 Oct 2024
Demystifying Large Language Models for Medicine: A Primer Qiao Jin Nicholas Wan Robert Leaman Shubo Tian Zhizheng Wang ... Chunhua Weng Ronald M. Summers Qingyu Chen Yifan Peng Zhiyong Lu LM&MA 45 4 0 24 Oct 2024
MoRE: Multi-Modal Contrastive Pre-training with Transformers on X-Rays, ECGs, and Diagnostic Report Samrajya Thapa Koushik Howlader Subhankar Bhattacharjee Wei le MedIm 28 1 0 21 Oct 2024
Unleashing the Potential of Vision-Language Pre-Training for 3D Zero-Shot Lesion Segmentation via Mask-Attribute Alignment Yankai Jiang Wenhui Lei Xiaofan Zhang S. Zhang MedIm 42 2 0 21 Oct 2024
Concept Complement Bottleneck Model for Interpretable Medical Image Diagnosis Hongmei Wang Junlin Hou Hao Chen 36 0 0 20 Oct 2024
Weakly-supervised diagnosis identification from Italian discharge letters Vittorio Torri Elisa Barbieri Anna Cantarutti Carlo Giaquinto Francesca Ieva 21 0 0 19 Oct 2024
Medical-GAT: Cancer Document Classification Leveraging Graph-Based Residual Network for Scenarios with Limited Data Elias Hossain Tasfia Nuzhat Shamsul Masum Shahram Rahimi Sudip Mittal 42 0 0 19 Oct 2024
Deep Generative Models Unveil Patterns in Medical Images Through Vision-Language Conditioning Xiaodan Xing Junzhi Ning Yang Nan Guang Yang MedIm 27 0 0 17 Oct 2024
Identifying Task Groupings for Multi-Task Learning Using Pointwise V-Usable Information Yingya Li Timothy A. Miller Steven Bethard G. Savova 29 0 0 16 Oct 2024
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning Hongyi Yuan Suqi Liu Kelly Cho Katherine P. Liao Alexandre Pereira T. Cai MedIm 29 0 0 14 Oct 2024
CXPMRG-Bench: Pre-training and Benchmarking for X-ray Medical Report Generation on CheXpert Plus Dataset Xiao Wang Fuling Wang Yuehang Li Qingchuan Ma Shiao Wang Bo Jiang Chuanfu Li Jin Tang 43 2 0 01 Oct 2024
Advancing Medical Radiograph Representation Learning: A Hybrid Pre-training Paradigm with Multilevel Semantic Granularity Hanqi Jiang Xixuan Hao Yuzhou Huang Chong Ma Jiaxun Zhang Yi Pan Ruimao Zhang MedIm 37 0 0 01 Oct 2024
Suicide Phenotyping from Clinical Notes in Safety-Net Psychiatric Hospital Using Multi-Label Classification with Pre-Trained Language Models Zehan Li Yan Hu Scott Lane Salih Selek Lokesh Shahani Rodrigo Machado-Vieira Jair Soares Hua Xu Hongfang Liu Ming Huang AI4MH NoLa 17 1 0 27 Sep 2024
Evaluation of Large Language Models for Summarization Tasks in the Medical Domain: A Narrative Review Emma Croxford Yanjun Gao Nicholas Pellegrino Karen K. Wong Graham Wills Elliot First Frank J. Liao Cherodeep Goswami Brian Patterson Majid Afshar HILM ELM LM&MA 37 1 0 26 Sep 2024
A Survey of Spatio-Temporal EEG data Analysis: from Models to Applications Pengfei Wang Huanran Zheng Silong Dai Yiqiao Wang Xiaotian Gu Yuanbin Wu Xiaoling Wang SyDa AI4TS 45 3 0 26 Sep 2024
Multi-View and Multi-Scale Alignment for Contrastive Language-Image Pre-training in Mammography Yuexi Du John Onofrey Nicha Dvornek VLM 53 1 0 26 Sep 2024
Generative LLM Powered Conversational AI Application for Personalized Risk Assessment: A Case Study in COVID-19 Mohammad Amin Roshani Xiangyu Zhou Yao Qiang Srinivasan Suresh Steve Hicks Usha Sethuraman Dongxiao Zhu LM&MA 26 0 0 23 Sep 2024
DSG-KD: Knowledge Distillation from Domain-Specific to General Language Models Sangyeon Cho Jangyeong Jeon Dongjoon Lee Changhee Lee Junyeong Kim 27 1 0 23 Sep 2024
Profiling Patient Transcript Using Large Language Model Reasoning Augmentation for Alzheimer's Disease Detection Chin-Po Chen Jeng-Lin Li LM&MA 23 0 0 19 Sep 2024
Contextual Breach: Assessing the Robustness of Transformer-based QA Models Asir Saadat Nahian Ibn Asad Md Farhan Ishmam AAML 46 0 0 17 Sep 2024
GP-GPT: Large Language Model for Gene-Phenotype Mapping Yanjun Lyu Zihao Wu Lu Zhang Jing Zhang Yiwei Li ... Rongjie Liu Chao Huang Wentao Li Tianming Liu Dajiang Zhu LM&MA 25 3 0 15 Sep 2024
Synthetic4Health: Generating Annotated Synthetic Clinical Letters Libo Ren Samuel Belkadi Lifeng Han Warren Del-Pinto Goran Nenadic SyDa 37 1 0 14 Sep 2024
Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trials Yizhen Zheng Huan Yee Koh M. Yang Li Li Lauren T. May Geoffrey I. Webb Shirui Pan George Church LM&MA 44 9 0 06 Sep 2024
CACER: Clinical Concept Annotations for Cancer Events and Relations Yujuan Fu Giridhar Kaushik Ramachandran Ahmad Halwani Bridget T. McInnes Fei Xia K. Lybarger Meliha Yetisgen Özlem Uzuner 37 1 0 05 Sep 2024
EEG-Language Modeling for Pathology Detection Sam Gijsen Kerstin Ritter 47 0 0 02 Sep 2024
Pre-Trained Language Models for Keyphrase Prediction: A Review Muhammad Umair Tangina Sultana Young-Koo Lee 40 4 0 02 Sep 2024
Automatic Differential Diagnosis using Transformer-Based Multi-Label Sequence Classification Abu Adnan Sadi Mohammad Ashrafuzzaman Khan Lubaba Binte Saber 43 0 0 28 Aug 2024
Domain-specific long text classification from sparse relevant information Célia DĆruz J. Bereder Frédéric Precioso Michel Riveill 39 0 0 23 Aug 2024
A New Era in Computational Pathology: A Survey on Foundation and Vision-Language Models Dibaloke Chanda Milan Aryal Nasim Yahya Soltani Masoud Ganji AI4CE VLM 44 7 0 23 Aug 2024