Publicly Available Clinical BERT Embeddings

6 April 2019

Matthew B. A. McDermott

AI4MH

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Papers citing "Publicly Available Clinical BERT Embeddings"

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MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models Xiaomin Li Mingye Gao Yuexing Hao Taoran Li Guangya Wan Zihan Wang Yijun Wang LM&MA ELM AI4MH 12 0 0 16 May 2025
SECRET: Semi-supervised Clinical Trial Document Similarity Search Trisha Das Afrah Shafquat Beigi Mandis Jacob Aptekar Jimeng Sun 12 0 0 16 May 2025
LLM-based Prompt Ensemble for Reliable Medical Entity Recognition from EHRs K. M. S. Islam A. S. Nipu Jiawei Wu Praveen Madiraju 46 0 0 13 May 2025
Diffusion-driven SpatioTemporal Graph KANsformer for Medical Examination Recommendation Jiacheng Li Yangtao Zhou Zhifu Zhao Qinglan Huang Jian Qi Xiao He Hua Chu Fu Li DiffM MedIm 58 0 0 12 May 2025
Prompt to Polyp: Medical Text-Conditioned Image Synthesis with Diffusion Models Mikhail Chaichuk Sushant Gautam Steven A. Hicks Elena Tutubalina DiffM MedIm 55 0 0 08 May 2025
Retrieval-augmented in-context learning for multimodal large language models in disease classification Zaifu Zhan Shuang Zhou Xiaoshan Zhou Yongkang Xiao Jun Wang Jiawen Deng He Zhu Yu Hou Rui Zhang 51 0 0 04 May 2025
Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 60 2 0 29 Apr 2025
Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation Shahad Albastaki Anabia Sohail I. I. Ganapathi B. Alawode Asim Khan Sajid Javed Naoufel Werghi Mohammed Bennamoun Arif Mahmood 71 0 0 26 Apr 2025
Temporal Entailment Pretraining for Clinical Language Models over EHR Data Tatsunori Tanaka Fi Zheng Kai Sato Zhifeng Li Yuanyun Zhang Shi Li 29 0 0 25 Apr 2025
Application of Contrastive Learning on ECG Data: Evaluating Performance in Japanese and Classification with Around 100 Labels Junichiro Takahashi JingChuan Guan Masataka Sato Kaito Baba Kazuto Haruguchi Daichi Nagashima Satoshi Kodera Norihiko Takeda 28 0 0 12 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 39 0 0 10 Apr 2025
A Reality Check of Vision-Language Pre-training in Radiology: Have We Progressed Using Text? Julio Silva-Rodríguez Jose Dolz Ismail ben Ayed VLM MedIm 40 0 0 07 Apr 2025
Multi-encoder nnU-Net outperforms Transformer models with self-supervised pretraining Seyedeh Sahar Taheri Otaghsara Reza Rahmanzadeh ViT 39 0 0 04 Apr 2025
Clinical ModernBERT: An efficient and long context encoder for biomedical text Simon A. Lee Anthony Wu Jeffrey N. Chiang MedIm 46 3 0 04 Apr 2025
DALIP: Distribution Alignment-based Language-Image Pre-Training for Domain-Specific Data Junjie Wu Jiangtao Xie Zhaolin Zhang Qilong Wang Q. Hu P. Li Sen Xu VLM 50 0 0 02 Apr 2025
STPNet: Scale-aware Text Prompt Network for Medical Image Segmentation Dandan Shan Zihan Li Yunxiang Li Qingde Li Jie Tian Qingqi Hong MedIm 38 0 0 02 Apr 2025
Comparing representations of long clinical texts for the task of patient note-identification Safa Alsaidi Marc Vincent O. Boyer Nicolas Garcelon Miguel Couceiro Adrien Coulet 57 0 0 31 Mar 2025
BiPVL-Seg: Bidirectional Progressive Vision-Language Fusion with Global-Local Alignment for Medical Image Segmentation Rafi Ibn Sultan Hui Zhu Chengyin Li Dongxiao Zhu 55 0 0 30 Mar 2025
Prediction of 30-day hospital readmission with clinical notes and EHR information Tiago Almeida Plinio Moreno Catarina Barata 56 0 0 29 Mar 2025
CFiCS: Graph-Based Classification of Common Factors and Microcounseling Skills Fabian Schmidt Karin Hammerfald Henrik Haaland Jahren Vladimir Vlassov 31 0 0 28 Mar 2025
ProtoBERT-LoRA: Parameter-Efficient Prototypical Finetuning for Immunotherapy Study Identification Shijia Zhang Xiyu Ding Kai Ding Jacob Zhang Kevin Galinsky Mengrui Wang Ryan P. Mayers Zheyu Wang Hadi Kharrazi 73 0 0 26 Mar 2025
A Retrieval-Based Approach to Medical Procedure Matching in Romanian Andrei Niculae Adrian Cosma Emilian Radoi 67 0 0 26 Mar 2025
Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach Rochana Chaturvedi Peyman Baghershahi Sourav Medya Barbara Di Eugenio 51 0 0 23 Mar 2025
Beyond Negation Detection: Comprehensive Assertion Detection Models for Clinical NLP Veysel Kocaman Yigit Gul M. Aytug Kaya H. Haq Mehmet Butgul Cabir Celik D. Talby MedIm 44 0 0 21 Mar 2025
Multi-Modal Foundation Models for Computational Pathology: A Survey Dong Li Guihong Wan Xintao Wu Xinyu Wu Xiaohui Chen Yi He Christine G. Lian Peter K. Sorger Yevgeniy R. Semenov Chen Zhao MedIm 48 0 0 12 Mar 2025
Towards Scalable and Cross-Lingual Specialist Language Models for Oncology Morteza Rohanian Tarun Mehra Nicola Miglino Farhad Nooralahzadeh Michael Krauthammer Andreas Wicki LM&MA 41 0 0 11 Mar 2025
Anatomy-Aware Conditional Image-Text Retrieval Meng Zheng Jiajin Zhang Benjamin Planche Zhongpai Gao Terrence Chen Ziyan Wu MedIm 57 0 0 10 Mar 2025
OFF-CLIP: Improving Normal Detection Confidence in Radiology CLIP with Simple Off-Diagonal Term Auto-Adjustment Junhyun Park Chanyu Moon Donghwan Lee Kyungsu Kim Minho Hwang VLM MedIm 62 0 0 03 Mar 2025
A Comparison of Object Detection and Phrase Grounding Models in Chest X-ray Abnormality Localization using Eye-tracking Data Elham Ghelichkhan Tolga Tasdizen 41 0 0 02 Mar 2025
RuCCoD: Towards Automated ICD Coding in Russian A. Nesterov Andrey Sakhovskiy Ivan Sviridov Airat Valiev Vladimir Makharev Petr Anokhin Galina Zubkova E. Tutubalina 48 0 0 28 Feb 2025
Generating Clinically Realistic EHR Data via a Hierarchy- and Semantics-Guided Transformer Guanglin Zhou Sebastiano Barbieri 41 0 0 28 Feb 2025
SuPreME: A Supervised Pre-training Framework for Multimodal ECG Representation Learning Mingsheng Cai Jiuming Jiang Wenhao Huang Che Liu Rossella Arcucci AI4TS 48 0 0 27 Feb 2025
MEDDxAgent: A Unified Modular Agent Framework for Explainable Automatic Differential Diagnosis Daniel Rose Chia-Chien Hung Marco Lepri Israa Alqassem Kiril Gashteovski Carolin (Haas) Lawrence LM&MA 73 1 0 26 Feb 2025
Progressive Local Alignment for Medical Multimodal Pre-training Huimin Yan Xian Yang Liang Bai Jiye Liang 72 0 0 25 Feb 2025
Patient Trajectory Prediction: Integrating Clinical Notes with Transformers Sifal Klioui Sana Sellami Youssef Trardi 76 0 0 25 Feb 2025
Citrus: Leveraging Expert Cognitive Pathways in a Medical Language Model for Advanced Medical Decision Support G. Wang Minyu Gao Shuai Yang Ya Zhang Lizhi He ... Yexuan Zhang Wanyue Li Lu Chen Jintao Fei Xin Li 155 1 0 25 Feb 2025
Knowledge-enhanced Multimodal ECG Representation Learning with Arbitrary-Lead Inputs Che Liu Cheng Ouyang Zhongwei Wan Haozhe Wang Wenjia Bai Rossella Arcucci 60 1 0 25 Feb 2025
Large Language Models are Powerful Electronic Health Record Encoders S. Hegselmann Georg von Arnim Tillmann Rheude Noel Kronenberg David Sontag Gerhard Hindricks R. Eils Benjamin Wild LM&MA 49 1 0 24 Feb 2025
LabTOP: A Unified Model for Lab Test Outcome Prediction on Electronic Health Records Sujeong Im Jungwoo Oh Edward Choi BDL LM&MA 53 0 0 20 Feb 2025
Tabular Embeddings for Tables with Bi-Dimensional Hierarchical Metadata and Nesting Gyanendra Shrestha Chutain Jiang Sai Akula Vivek Yannam Anna Pyayt Michael Gubanov LMTD 97 0 0 20 Feb 2025
Assessing the Impact of the Quality of Textual Data on Feature Representation and Machine Learning Models Tabinda Sarwar Antonio Jose Jimeno Yepes Lawrence Cavedon 69 0 0 12 Feb 2025
Privacy-Preserving Dataset Combination Keren Fuentes Mimee Xu Irene Chen 43 0 0 09 Feb 2025
Conversation AI Dialog for Medicare powered by Finetuning and Retrieval Augmented Generation Atharva Mangeshkumar Agrawal Rutika Pandurang Shinde Vasanth Kumar Bhukya Ashmita Chakraborty Sagar Bharat Shah Tanmay Shukla Sree Pradeep Kumar Relangi Nilesh Mutyam LM&MA AI4MH 84 0 0 04 Feb 2025
Fairness Analysis of CLIP-Based Foundation Models for X-Ray Image Classification Xiangyu Sun Xiaoguang Zou Yuanquan Wu Guotai Wang S. Zhang MedIm VLM 73 0 0 31 Jan 2025
Embedding-Driven Diversity Sampling to Improve Few-Shot Synthetic Data Generation Ivan Lopez Fateme Nateghi Haredasht Kaitlin Caoili Jonathan H. Chen Akshay S. Chaudhari MedIm SyDa 66 0 0 28 Jan 2025
MedFILIP: Medical Fine-grained Language-Image Pre-training Xinjie Liang Xiangyu Li Fanding Li Jie Jiang Qing Dong Wei Wang Kaidi Wang Suyu Dong Gongning Luo Shuo Li LM&MA VLM MedIm 69 3 0 18 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 105 18 0 17 Jan 2025
Information Extraction from Clinical Notes: Are We Ready to Switch to Large Language Models? Yan Hu X. Zuo Yujia Zhou Xueqing Peng J. Huang ... Ruey-Ling Weng Qingyu Chen Xiaoqian Jiang Kirk Roberts Hua Xu LM&MA 31 4 0 08 Jan 2025
EEG Emotion Copilot: Optimizing Lightweight LLMs for Emotional EEG Interpretation with Assisted Medical Record Generation Hongyu Chen Weiming Zeng Chong Chen Luhui Cai Fei Wang ... Wei Zhang Y. Li Hongjie Yan W. Siok Nizhuan Wang 41 1 0 08 Jan 2025
INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning Pablo Romero Lifeng Han Goran Nenadic LM&MA 39 1 0 31 Dec 2024