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Publicly Available Clinical BERT Embeddings

Publicly Available Clinical BERT Embeddings

6 April 2019
Emily Alsentzer
John R. Murphy
Willie Boag
W. Weng
Di Jin
Tristan Naumann
Matthew B. A. McDermott
    AI4MH
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Papers citing "Publicly Available Clinical BERT Embeddings"

50 / 806 papers shown
Title
LLMs in Biomedicine: A study on clinical Named Entity Recognition
LLMs in Biomedicine: A study on clinical Named Entity Recognition
Masoud Monajatipoor
Jiaxin Yang
Joel Stremmel
Melika Emami
Fazlolah Mohaghegh
Mozhdeh Rouhsedaghat
Kai-Wei Chang
LM&MA
29
17
0
10 Apr 2024
Global Contrastive Training for Multimodal Electronic Health Records
  with Language Supervision
Global Contrastive Training for Multimodal Electronic Health Records with Language Supervision
Yingbo Ma
Suraj Kolla
Zhenhong Hu
Dhruv Kaliraman
Victoria Nolan
...
Jeremy A. Balch
Tyler J. Loftus
Parisa Rashidi
A. Bihorac
B. Shickel
AI4TS
33
1
0
10 Apr 2024
ClinLinker: Medical Entity Linking of Clinical Concept Mentions in
  Spanish
ClinLinker: Medical Entity Linking of Clinical Concept Mentions in Spanish
Fernando Gallego
Guillermo López-García
Luis Gascó Sánchez
Martin Krallinger
Francisco-Javier Veredas
19
3
0
09 Apr 2024
Prompt-driven Universal Model for View-Agnostic Echocardiography
  Analysis
Prompt-driven Universal Model for View-Agnostic Echocardiography Analysis
Sekeun Kim
Hui Ren
Peng Guo
Abder-Rahman Ali
Patrick Zhang
Kyungsang Kim
Xiang Li
Quanzheng Li
29
0
0
09 Apr 2024
Comprehensive Study on German Language Models for Clinical and
  Biomedical Text Understanding
Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding
Ahmad Idrissi-Yaghir
Amin Dada
Henning Schafer
Kamyar Arzideh
Giulia Baldini
...
Peter A. Horn
Christin Seifert
F. Nensa
Jens Kleesiek
Christoph M. Friedrich
AI4MH
39
2
0
08 Apr 2024
Xiwu: A Basis Flexible and Learnable LLM for High Energy Physics
Xiwu: A Basis Flexible and Learnable LLM for High Energy Physics
Zhengde Zhang
Yiyu Zhang
Haodong Yao
Jianwen Luo
Rui Zhao
...
Ke Li
Lina Zhao
Jun Cao
Fazhi Qi
Changzheng Yuan
40
2
0
08 Apr 2024
Foundation Model for Advancing Healthcare: Challenges, Opportunities,
  and Future Directions
Foundation Model for Advancing Healthcare: Challenges, Opportunities, and Future Directions
Yuting He
Fuxiang Huang
Xinrui Jiang
Yuxiang Nie
Minghao Wang
Jiguang Wang
Hao Chen
LM&MA
AI4CE
84
27
0
04 Apr 2024
Extracting Social Determinants of Health from Pediatric Patient Notes
  Using Large Language Models: Novel Corpus and Methods
Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods
Yujuan Fu
Giridhar Kaushik Ramachandran
Nicholas J. Dobbins
Namu Park
Michael Leu
Abby R. Rosenberg
K. Lybarger
Fei Xia
Özlem Uzuner
Meliha Yetisgen
46
5
0
31 Mar 2024
Developing Healthcare Language Model Embedding Spaces
Developing Healthcare Language Model Embedding Spaces
Niall Taylor
Dan Schofield
Andrey Kormilitzin
Dan W Joyce
A. Nevado-Holgado
35
0
0
28 Mar 2024
Bespoke Large Language Models for Digital Triage Assistance in Mental
  Health Care
Bespoke Large Language Models for Digital Triage Assistance in Mental Health Care
Niall Taylor
Andrey Kormilitzin
Isabelle Lorge
A. Nevado-Holgado
Dan W Joyce
LM&MA
AI4MH
35
0
0
28 Mar 2024
Improving Pre-trained Language Model Sensitivity via Mask Specific
  losses: A case study on Biomedical NER
Improving Pre-trained Language Model Sensitivity via Mask Specific losses: A case study on Biomedical NER
Micheal Abaho
Danushka Bollegala
Gary Leeming
Dan Joyce
Iain E Buchan
28
0
0
26 Mar 2024
Exploring the Generalization of Cancer Clinical Trial Eligibility
  Classifiers Across Diseases
Exploring the Generalization of Cancer Clinical Trial Eligibility Classifiers Across Diseases
Yumeng Yang
Ashley Gilliam
Ethan B. Ludmir
Kirk Roberts
18
3
0
25 Mar 2024
Large Language Models in Biomedical and Health Informatics: A
  Bibliometric Review
Large Language Models in Biomedical and Health Informatics: A Bibliometric Review
Huizi Yu
Lizhou Fan
Lingyao Li
Jiayan Zhou
Zihui Ma
...
Sijia He
Mingyu Jin
Yongfeng Zhang
Ashvin Gandhi
Xin Ma
LM&MA
40
11
0
24 Mar 2024
AI for Biomedicine in the Era of Large Language Models
AI for Biomedicine in the Era of Large Language Models
Zhenyu Bi
Sajib Acharjee Dip
Daniel Hajialigol
Sindhura Kommu
Hanwen Liu
Meng Lu
Xuan Wang
LM&MA
AI4CE
34
8
0
23 Mar 2024
Contrastive Learning on Multimodal Analysis of Electronic Health Records
Contrastive Learning on Multimodal Analysis of Electronic Health Records
Tianxi Cai
Feiqing Huang
Ryumei Nakada
Linjun Zhang
Doudou Zhou
61
0
0
22 Mar 2024
MEDBind: Unifying Language and Multimodal Medical Data Embeddings
MEDBind: Unifying Language and Multimodal Medical Data Embeddings
Yuan Gao
Sangwook Kim
David E Austin
Chris McIntosh
32
3
0
19 Mar 2024
Eye-gaze Guided Multi-modal Alignment for Medical Representation
  Learning
Eye-gaze Guided Multi-modal Alignment for Medical Representation Learning
Chong Ma
Hanqi Jiang
Wenting Chen
Yiwei Li
Zihao Wu
...
Dajiang Zhu
Tuo Zhang
Dinggang Shen
Tianming Liu
Xiang Li
23
0
0
19 Mar 2024
Leveraging Large Language Models to Extract Information on Substance Use
  Disorder Severity from Clinical Notes: A Zero-shot Learning Approach
Leveraging Large Language Models to Extract Information on Substance Use Disorder Severity from Clinical Notes: A Zero-shot Learning Approach
Maria Mahbub
Gregory M Dams
Sudarshan Srinivasan
Caitlin Rizy
Ioana Danciu
Jodie Trafton
Kathryn Knight
40
4
0
18 Mar 2024
Can Large Language Models abstract Medical Coded Language?
Can Large Language Models abstract Medical Coded Language?
Simon A. Lee
Timothy Lindsey
ELM
LM&MA
35
10
0
16 Mar 2024
Large Language Model-informed ECG Dual Attention Network for Heart
  Failure Risk Prediction
Large Language Model-informed ECG Dual Attention Network for Heart Failure Risk Prediction
Chen Chen
Lei Li
M. Beetz
Abhirup Banerjee
Ramneek Gupta
Vicente Grau
34
4
0
15 Mar 2024
Improving Medical Multi-modal Contrastive Learning with Expert
  Annotations
Improving Medical Multi-modal Contrastive Learning with Expert Annotations
Yogesh Kumar
Pekka Marttinen
MedIm
VLM
31
10
0
15 Mar 2024
MeDSLIP: Medical Dual-Stream Language-Image Pre-training with Pathology-Anatomy Semantic Alignment
MeDSLIP: Medical Dual-Stream Language-Image Pre-training with Pathology-Anatomy Semantic Alignment
Wenrui Fan
M. N. I. Suvon
Shuo Zhou
Xianyuan Liu
S. Alabed
V. Osmani
Andrew J Swift
Chen Chen
Haiping Lu
MedIm
VLM
LM&MA
59
3
0
15 Mar 2024
Anatomical Structure-Guided Medical Vision-Language Pre-training
Anatomical Structure-Guided Medical Vision-Language Pre-training
Qingqiu Li
Xiaohan Yan
Jilan Xu
Runtian Yuan
Yuejie Zhang
Rui Feng
Quanli Shen
Xiaobo Zhang
Shujun Wang
42
5
0
14 Mar 2024
Decomposing Disease Descriptions for Enhanced Pathology Detection: A
  Multi-Aspect Vision-Language Pre-training Framework
Decomposing Disease Descriptions for Enhanced Pathology Detection: A Multi-Aspect Vision-Language Pre-training Framework
Vu Minh Hieu Phan
Yutong Xie
Yuankai Qi
Lingqiao Liu
Liyang Liu
Bowen Zhang
Zhibin Liao
Qi Wu
Minh Nguyen Nhat To
Johan W. Verjans
70
11
0
12 Mar 2024
Enhancing Readmission Prediction with Deep Learning: Extracting
  Biomedical Concepts from Clinical Texts
Enhancing Readmission Prediction with Deep Learning: Extracting Biomedical Concepts from Clinical Texts
Rasoul Samani
Mohammad Dehghani
Fahime Shahrokh
16
0
0
12 Mar 2024
Zero-Shot ECG Classification with Multimodal Learning and Test-time
  Clinical Knowledge Enhancement
Zero-Shot ECG Classification with Multimodal Learning and Test-time Clinical Knowledge Enhancement
Che Liu
Zhongwei Wan
Ouyang Cheng
Anand Shah
Wenjia Bai
Rossella Arcucci
42
29
0
11 Mar 2024
Advancing Text-Driven Chest X-Ray Generation with Policy-Based
  Reinforcement Learning
Advancing Text-Driven Chest X-Ray Generation with Policy-Based Reinforcement Learning
Woojung Han
Chanyoung Kim
Dayun Ju
Yumin Shim
Seong Jae Hwang
MedIm
37
8
0
11 Mar 2024
ClinicalMamba: A Generative Clinical Language Model on Longitudinal
  Clinical Notes
ClinicalMamba: A Generative Clinical Language Model on Longitudinal Clinical Notes
Zhichao Yang
Avijit Mitra
Sunjae Kwon
Hong-ye Yu
34
20
0
09 Mar 2024
Leveraging Biomolecule and Natural Language through Multi-Modal
  Learning: A Survey
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey
Qizhi Pei
Lijun Wu
Kaiyuan Gao
Jinhua Zhu
Yue Wang
Zun Wang
Tao Qin
Rui Yan
AI4CE
57
19
0
03 Mar 2024
Large Language Multimodal Models for 5-Year Chronic Disease Cohort
  Prediction Using EHR Data
Large Language Multimodal Models for 5-Year Chronic Disease Cohort Prediction Using EHR Data
Jun-En Ding
Phan Nguyen Minh Thao
Wen-Chih Peng
Jian-Zhe Wang
Chun-Cheng Chug
...
Dongsheng Luo
Chi-Te Wang
Pei-fu Chen
Feng Liu
Fang-Ming Hung
LM&MA
43
4
0
02 Mar 2024
AutoRD: An Automatic and End-to-End System for Rare Disease Knowledge
  Graph Construction Based on Ontologies-enhanced Large Language Models
AutoRD: An Automatic and End-to-End System for Rare Disease Knowledge Graph Construction Based on Ontologies-enhanced Large Language Models
Lang Cao
Jimeng Sun
Adam Cross
30
3
0
01 Mar 2024
EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using
  Discharge Summaries
EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries
Sunjun Kweon
Jiyoun Kim
Heeyoung Kwak
Dongchul Cha
Hangyul Yoon
Kwanghyun Kim
Jeewon Yang
Seunghyun Won
Edward Choi
LM&MA
38
4
0
25 Feb 2024
How Important Is Tokenization in French Medical Masked Language Models?
How Important Is Tokenization in French Medical Masked Language Models?
Yanis Labrak
Adrien Bazoge
B. Daille
Mickael Rouvier
Richard Dufour
41
1
0
22 Feb 2024
On Leveraging Encoder-only Pre-trained Language Models for Effective
  Keyphrase Generation
On Leveraging Encoder-only Pre-trained Language Models for Effective Keyphrase Generation
Di Wu
Wasi Uddin Ahmad
Kai-Wei Chang
35
3
0
21 Feb 2024
How Important is Domain Specificity in Language Models and Instruction
  Finetuning for Biomedical Relation Extraction?
How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction?
Aviv Brokman
Ramakanth Kavuluru
LM&MA
ALM
34
3
0
21 Feb 2024
Utilizing BERT for Information Retrieval: Survey, Applications,
  Resources, and Challenges
Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges
Jiajia Wang
Jimmy X. Huang
Xinhui Tu
Junmei Wang
Angela J. Huang
Md Tahmid Rahman Laskar
Amran Bhuiyan
34
28
0
18 Feb 2024
ICHPro: Intracerebral Hemorrhage Prognosis Classification Via
  Joint-attention Fusion-based 3d Cross-modal Network
ICHPro: Intracerebral Hemorrhage Prognosis Classification Via Joint-attention Fusion-based 3d Cross-modal Network
Xinlei Yu
Xinyang Li
Ruiquan Ge
Shibin Wu
Ahmed Elazab
...
Lingyan Zhang
Gangyong Jia
Taosheng Xu
Xiang Wan
Changmiao Wang
30
5
0
17 Feb 2024
Efficiency at Scale: Investigating the Performance of Diminutive
  Language Models in Clinical Tasks
Efficiency at Scale: Investigating the Performance of Diminutive Language Models in Clinical Tasks
Niall Taylor
U. Ghose
Omid Rohanian
Mohammadmahdi Nouriborji
Andrey Kormilitzin
David A. Clifton
A. Nevado-Holgado
LM&MA
ALM
31
6
0
16 Feb 2024
Towards Reducing Diagnostic Errors with Interpretable Risk Prediction
Towards Reducing Diagnostic Errors with Interpretable Risk Prediction
Denis Jered McInerney
William Dickinson
Lucy Flynn
Andrea Young
Geoffrey S. Young
Jan-Willem van de Meent
Byron C. Wallace
32
1
0
15 Feb 2024
Integrating ChatGPT into Secure Hospital Networks: A Case Study on
  Improving Radiology Report Analysis
Integrating ChatGPT into Secure Hospital Networks: A Case Study on Improving Radiology Report Analysis
Kyungsu Kim
Junhyun Park
Saul Langarica
Adham M Alkhadrawi
Synho Do
29
1
0
14 Feb 2024
DAEDRA: A language model for predicting outcomes in passive
  pharmacovigilance reporting
DAEDRA: A language model for predicting outcomes in passive pharmacovigilance reporting
Chris von Csefalvay
25
1
0
10 Feb 2024
Improving Agent Interactions in Virtual Environments with Language
  Models
Improving Agent Interactions in Virtual Environments with Language Models
Jack Zhang
LLMAG
32
0
0
08 Feb 2024
Exploring Low-Resource Medical Image Classification with Weakly
  Supervised Prompt Learning
Exploring Low-Resource Medical Image Classification with Weakly Supervised Prompt Learning
Fudan Zheng
Jindong Cao
Weijiang Yu
Zhiguang Chen
Nong Xiao
Yutong Lu
VLM
MedIm
29
16
0
06 Feb 2024
FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusion
FuseMoE: Mixture-of-Experts Transformers for Fleximodal Fusion
Xing Han
Huy Nguyen
Carl Harris
Nhat Ho
Suchi Saria
MoE
77
16
0
05 Feb 2024
MLIP: Enhancing Medical Visual Representation with Divergence Encoder
  and Knowledge-guided Contrastive Learning
MLIP: Enhancing Medical Visual Representation with Divergence Encoder and Knowledge-guided Contrastive Learning
Zhe Li
Laurence T. Yang
Bocheng Ren
Xin Nie
Zhangyang Gao
Cheng Tan
Stan Z. Li
VLM
15
12
0
03 Feb 2024
Interpretation of Intracardiac Electrograms Through Textual
  Representations
Interpretation of Intracardiac Electrograms Through Textual Representations
William Jongwon Han
Diana Gomez
Avi Alok
Chaojing Duan
Michael A. Rosenberg
Douglas Weber
Emerson Liu
Ding Zhao
26
1
0
02 Feb 2024
FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with
  Contrastive Learning in Multimodal Electronic Health Records
FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with Contrastive Learning in Multimodal Electronic Health Records
Yuqing Wang
Malvika Pillai
Yun Zhao
Catherine M. Curtin
Tina Hernandez-Boussard
27
0
0
01 Feb 2024
Emergency Department Decision Support using Clinical Pseudo-notes
Emergency Department Decision Support using Clinical Pseudo-notes
Simon A. Lee
Sujay Jain
Alex Chen
Kyoka Ono
Jennifer Fang
Á. Rudas
Jeffrey N. Chiang
24
8
0
31 Jan 2024
Comparing Template-based and Template-free Language Model Probing
Comparing Template-based and Template-free Language Model Probing
Sagi Shaier
Kevin Bennett
Lawrence E Hunter
K. Wense
ELM
36
3
0
31 Jan 2024
NNOSE: Nearest Neighbor Occupational Skill Extraction
NNOSE: Nearest Neighbor Occupational Skill Extraction
Mike Zhang
Rob van der Goot
Min-Yen Kan
Barbara Plank
37
3
0
30 Jan 2024
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