3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

21 June 2016

Thomas Brox

Papers citing "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation"

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Title
Technical Considerations for Semantic Segmentation in MRI using Convolutional Neural Networks Arjun D Desai G. Gold B. Hargreaves Akshay S. Chaudhari 11 30 0 05 Feb 2019
Projection-Based 2.5D U-net Architecture for Fast Volumetric Segmentation Christoph Angermann Markus Haltmeier R. Steiger S. Pereverzyev E. Gizewski SSeg 3DPC 11 22 0 01 Feb 2019
Automated brain extraction of multi-sequence MRI using artificial neural networks Fabian Isensee Marianne Schell I. Tursunova G. Brugnara D. Bonekamp ... S. Heiland Wolfgang Wick Martin Bendszus Klaus Hermann Maier-Hein Philipp Kickingereder 22 477 0 31 Jan 2019
Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning Yichen Wu Y. Rivenson Hongda Wang Yilin Luo Eyal Ben-David L. Bentolila C. Pritz Aydogan Ozcan MedIm 24 186 0 31 Jan 2019
Attention-driven Tree-structured Convolutional LSTM for High Dimensional Data Understanding Bin Kong Xin Wang Junjie Bai Yi Lu Feng Gao K. Cao Qi Song Shaoting Zhang Siwei Lyu Youbing Yin 30 3 0 29 Jan 2019
Combined tract segmentation and orientation mapping for bundle-specific tractography Jakob Wasserthal Peter Neher D. Hirjak Klaus H. Maier-Hein 30 121 0 29 Jan 2019
Cloud-Net: An end-to-end Cloud Detection Algorithm for Landsat 8 Imagery S. Mohajerani Parvaneh Saeedi 13 138 0 29 Jan 2019
A deep learning-based method for prostate segmentation in T2-weighted magnetic resonance imaging Davood Karimi Golnoosh Samei Yanan Shao Septimiu Salcudean 11 10 0 27 Jan 2019
Reducing the Model Variance of a Rectal Cancer Segmentation Network Joohyun Lee J. Oh Min Ju Kim B. Hur D. Sohn 22 15 0 22 Jan 2019
SUMNet: Fully Convolutional Model for Fast Segmentation of Anatomical Structures in Ultrasound Volumes Sumanth Nandamuri D. China Pabitra Mitra Debdoot Sheet 20 35 0 21 Jan 2019
AuxNet: Auxiliary tasks enhanced Semantic Segmentation for Automated Driving Sumanth Chennupati Ganesh Sistu S. Yogamani S. Rawashdeh 17 46 0 17 Jan 2019
Cascade Decoder: A Universal Decoding Method for Biomedical Image Segmentation Peixian Liang Jianxu Chen Hao Zheng L. Yang Yizhe Zhang Danny Chen MedIm 11 12 0 15 Jan 2019
3D Object Detection Using Scale Invariant and Feature Reweighting Networks Xin Zhao Zhe Liu Ruolan Hu Kaiqi Huang 3DPC 22 95 0 08 Jan 2019
Healthy versus pathological learning transferability in shoulder muscle MRI segmentation using deep convolutional encoder-decoders Pierre-Henri Conze S. Brochard Valérie Burdin F. Sheehan C. Pons MedIm 23 47 0 06 Jan 2019
Path-Invariant Map Networks Zaiwei Zhang Zhenxiao Liang Lemeng Wu Xiaowei Zhou Qi-Xing Huang 3DPC 6 12 0 31 Dec 2018
Cascaded V-Net using ROI masks for brain tumor segmentation Adrià Casamitjana Hugo J. Kuijf Bjoern H. Menze M. Reyes Verónica Vilaplana 22 196 0 30 Dec 2018
Monte-Carlo Sampling applied to Multiple Instance Learning for Histological Image Classification Marc Combalia João Paulo Papa 25 81 0 30 Dec 2018
MMFNet: A Multi-modality MRI Fusion Network for Segmentation of Nasopharyngeal Carcinoma Huai Chen Yuxiao Qi Yong Yin TengXiang Li Xiaoqing Liu Xiuli Li G. Gong Lisheng Wang MedIm 22 70 0 25 Dec 2018
Holistic Decomposition Convolution for Effective Semantic Segmentation of 3D MR Images G. Zeng Guoyan Zheng 11 3 0 24 Dec 2018
Computational Anatomy for Multi-Organ Analysis in Medical Imaging: A Review Juan J. Cerrolaza M. L. Picazo L. Humbert Yoshinobu Sato Daniel Rueckert M. A. G. Ballester M. Linguraru AI4CE 28 68 0 20 Dec 2018
Fast and Accurate 3D Medical Image Segmentation with Data-swapping Method Haruki Imai Samuel Matzek Tung D. Le Yasushi Negishi K. Kawachiya MedIm 20 10 0 19 Dec 2018
Combating Uncertainty with Novel Losses for Automatic Left Atrium Segmentation Xin Yang Na Wang Yi Wang Xu Wang R. Nezafat Dong Ni Pheng-Ann Heng 19 35 0 14 Dec 2018
CFUN: Combining Faster R-CNN and U-net Network for Efficient Whole Heart Segmentation Zhanwei Xu Ziyi Wu Jianjiang Feng SSeg 24 66 0 12 Dec 2018
Non-local U-Net for Biomedical Image Segmentation Zhengyang Wang Na Zou Dinggang Shen Shuiwang Ji SSeg 13 6 0 10 Dec 2018
A New Ensemble Learning Framework for 3D Biomedical Image Segmentation Hao Zheng Yizhe Zhang Lin Yang Peixian Liang Zhuo Zhao Chaoli Wang Danny Chen 3DV 31 75 0 10 Dec 2018
Automatically Segmenting the Left Atrium from Cardiac Images Using Successive 3D U-Nets and a Contour Loss Shuman Jia A. Despinasse Zihao Wang H. Delingette Xavier Pennec P. Jaïs H. Cochet Maxime Sermesant 20 46 0 06 Dec 2018
Brain Segmentation from k-space with End-to-end Recurrent Attention Network Qiaoying Huang Xiao Chen Dimitris N. Metaxas M. Nadar MedIm 21 1 0 05 Dec 2018
Cerebrovascular Network Segmentation on MRA Images with Deep Learning Pedro Sanches C. Meyer Vincent Vigon B. Naegel 27 51 0 04 Dec 2018
Brain Tumor Segmentation using an Ensemble of 3D U-Nets and Overall Survival Prediction using Radiomic Features Xue Feng Nicholas J. Tustison C. Meyer 48 224 0 03 Dec 2018
SUSAN: Segment Unannotated image Structure using Adversarial Network Fang Liu GAN MedIm 42 56 0 03 Dec 2018
Elastic Boundary Projection for 3D Medical Image Segmentation Tianwei Ni Lingxi Xie Huangjie Zheng Elliot K. Fishman Alan Yuille 27 34 0 03 Dec 2018
Iterative Reorganization with Weak Spatial Constraints: Solving Arbitrary Jigsaw Puzzles for Unsupervised Representation Learning Chen Wei Lingxi Xie Xutong Ren Yingda Xia Chi Su Jiaying Liu Qi Tian Alan Yuille SSL 25 131 0 02 Dec 2018
iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network Guilherme Aresta Colin Jacobs Teresa Araújo António Cunha Isabel Ramos Bram van Ginneken A. Campilho 9 77 0 30 Nov 2018
Deep learning based automatic segmentation of lumbosacral nerves on non-contrast CT for radiographic evaluation: a pilot study Guoxin Fan Huaqing Liu Zhenhua Wu Yufeng Li C. Feng Dongdong Wang Jie Luo Xiaofei Guan W. Wells Shisheng He 6 0 0 28 Nov 2018
Tracing in 2D to Reduce the Annotation Effort for 3D Deep Delineation Mateusz Koziñski Agata Mosinska Mathieu Salzmann Pascal Fua MedIm 3DV 31 20 0 26 Nov 2018
A Self-Adaptive Network For Multiple Sclerosis Lesion Segmentation From Multi-Contrast MRI With Various Imaging Protocols Brandon Yushan Feng Huitong Pan C. Meyer Xue Feng OOD 19 19 0 19 Nov 2018
Splenomegaly Segmentation on Multi-modal MRI using Deep Convolutional Networks Yuankai Huo Zhoubing Xu Shunxing Bao Camilo Bermudez Hyeonsoo Moon ... T. Moyo M. Savona A. Assad R. Abramson Bennett A. Landman 37 46 0 09 Nov 2018
Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging with Fisher-Discriminative 3D CNN Le Zhang Ali Gooya Marco Pereañez B. Dong Stefan K. Piechnik M. Horowitz S. Petersen Alejandro F. Frangi 17 28 0 06 Nov 2018
False Positive Reduction in Lung Computed Tomography Images using Convolutional Neural Networks Gorkem Polat U. Halici Y. S. Dogrusoz MedIm 10 2 0 04 Nov 2018
RA-UNet: A hybrid deep attention-aware network to extract liver and tumor in CT scans Qiangguo Jin Zhao-Peng Meng Changming Sun Leyi Wei R. Su MedIm 27 354 0 04 Nov 2018
Nonlinear Collaborative Scheme for Deep Neural Networks Hui-Ling Zhen Xi Lin Alan Tang Zhenhua Li Qingfu Zhang Sam Kwong 14 4 0 04 Nov 2018
Ischemic Stroke Lesion Segmentation in CT Perfusion Scans using Pyramid Pooling and Focal Loss S. M. Abulnaga Jonathan Rubin 23 50 0 02 Nov 2018
Acute and sub-acute stroke lesion segmentation from multimodal MRI Albert Clérigues Sergi Valverde J. Bernal J. Freixenet A. Oliver Xavier Llado 19 6 0 31 Oct 2018
Shape and Margin-Aware Lung Nodule Classification in Low-dose CT Images via Soft Activation Mapping Yiming Lei Yukun Tian Hongming Shan Junping Zhang Ge Wang M. Kalra 19 75 0 30 Oct 2018
Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning Arnab Kumar Mondal Jose Dolz Christian Desrosiers GAN MedIm 37 118 0 29 Oct 2018
Dental pathology detection in 3D cone-beam CT A. Zakirov M. Ezhov Maxim Gusarev Vladimir Alexandrovsky E. Shumilov MedIm 9 9 0 24 Oct 2018
Coarse-to-fine volumetric segmentation of teeth in Cone-Beam CT M. Ezhov A. Zakirov Maxim Gusarev 27 25 0 24 Oct 2018
Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 16 151 0 18 Oct 2018
Dense Multi-path U-Net for Ischemic Stroke Lesion Segmentation in Multiple Image Modalities Jose Dolz Ismail Ben Ayed Christian Desrosiers 15 100 0 16 Oct 2018
CNN-based Preprocessing to Optimize Watershed-based Cell Segmentation in 3D Confocal Microscopy Images Dennis Eschweiler T. V. Spina Rohan Choudhury E. Meyerowitz Alexandre Cunha Johannes Stegmaier 14 50 0 16 Oct 2018