Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 March 2016

Konstantinos Kamnitsas

Papers citing "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation"

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Title
Multi-channel MRI Embedding: An EffectiveStrategy for Enhancement of Human Brain WholeTumor Segmentation A. Pandya Catherine Samuel N. Patel Vaibhavkumar Patel Akilan Thangarajah 33 1 0 13 Sep 2020
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology Henry F. J. Tregidgo Adrià Casamitjana Caitlin S. Latimer Mitchell D Kilgore Eleanor D. Robinson ... Bruce Fischl Adrian Dalca C. M. Donald Dirk C. Keene Juan Eugenio Iglesias 33 5 0 11 Sep 2020
Unsupervised Domain Adaptation via CycleGAN for White Matter Hyperintensity Segmentation in Multicenter MR Images Julian Alberto Palladino D. Slezak Enzo Ferrante OOD MedIm 29 27 0 10 Sep 2020
DARWIN: A Highly Flexible Platform for Imaging Research in Radiology Lufan Chang Wenjing Zhuang Richeng Wu Sai Feng Hao Liu Jing Yu Jia Ding Ziteng Wang Jiaqi Zhang MedIm AI4CE 6 7 0 02 Sep 2020
3D Semantic Segmentation of Brain Tumor for Overall Survival Prediction R. Agravat M. Raval 24 28 0 25 Aug 2020
Training CNN Classifiers for Semantic Segmentation using Partially Annotated Images: with Application on Human Thigh and Calf MRI C. Wong S. Marchesseau M. Kalimeri Tiang Siew Yap Serena S. H. Teo ... C. Khoo Philip T. H. Lee M. Leow J. Totman M. Stephenson 22 0 0 16 Aug 2020
Abstracting Deep Neural Networks into Concept Graphs for Concept Level Interpretability Avinash Kori Parth Natekar Ganapathy Krishnamurthi Balaji Srinivasan 26 8 0 14 Aug 2020
Geometric Deep Learning for Post-Menstrual Age Prediction based on the Neonatal White Matter Cortical Surface Vitalis Vosylius Andy Wang C. Waters Alexey Zakharov Francis Ward ... J. Cupitt A. Makropoulos A. Schuh Daniel Rueckert A. Alansary 3DH 21 12 0 13 Aug 2020
Integrating uncertainty in deep neural networks for MRI based stroke analysis L. Herzog Elvis Murina Oliver Durr S. Wegener Beate Sick 10 51 0 13 Aug 2020
AtrialJSQnet: A New Framework for Joint Segmentation and Quantification of Left Atrium and Scars Incorporating Spatial and Shape Information Lei Li V. Zimmer Julia A. Schnabel Xiahai Zhuang 17 41 0 11 Aug 2020
Automated Claustrum Segmentation in Human Brain MRI Using Deep Learning Hongwei Bran Li A. Menegaux B. Schmitz-Koep Antonia Neubauer Felix J. B. Bäuerlein Suprosanna Shit C. Sorg Bjoern H. Menze D. Hedderich 33 20 0 08 Aug 2020
Dual Convolutional Neural Networks for Breast Mass Segmentation and Diagnosis in Mammography Heyi Li Dongdong Chen W. Nailon Mike E. Davies Dave Laurenson 14 51 0 07 Aug 2020
Multiple Sclerosis Lesion Activity Segmentation with Attention-Guided Two-Path CNNs N. Gessert Julia Kruger R. Opfer A. Ostwaldt Praveena Manogaran H. Kitzler S. Schippling Alexander Schlaefer MedIm 17 47 0 05 Aug 2020
Automated Segmentation of Brain Gray Matter Nuclei on Quantitative Susceptibility Mapping Using Deep Convolutional Neural Network Chao Chai Pengchong Qiao Bin Zhao Huiying Wang Guohua Liu ... W. Shen Chen Cao Xinchen Ye Zhiyang Liu S. Xia 17 0 0 03 Aug 2020
A review of deep learning in medical imaging: Imaging traits, technology trends, case studies with progress highlights, and future promises S. Kevin Zhou H. Greenspan Christos Davatzikos James S. Duncan Bram van Ginneken A. Madabhushi Jerry L. Prince Daniel Rueckert Ronald M. Summers 55 625 0 02 Aug 2020
Foveation for Segmentation of Ultra-High Resolution Images Chen Jin Ryutaro Tanno Moucheng Xu T. Mertzanidou Daniel C. Alexander AI4TS 22 4 0 29 Jul 2020
Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients Sofie Tilborghs Ine Dirks Lucas Fidon S. Willems Tom Eelbode ... D. Robben D. Smeets F. Maes Jef Vandemeulebroucke P. Suetens OOD 40 28 0 29 Jul 2020
Harnessing spatial homogeneity of neuroimaging data: patch individual filter layers for CNNs Fabian Eitel J. P. Albrecht M. Weygandt Friedemann Paul K. Ritter 21 2 0 23 Jul 2020
Real-Time Instrument Segmentation in Robotic Surgery using Auxiliary Supervised Deep Adversarial Learning Mobarakol Islam Daniel Anojan Atputharuban Ravikiran Ramesh Hongliang Ren MedIm 91 94 0 22 Jul 2020
Deep Learning Based Segmentation of Various Brain Lesions for Radiosurgery Siang-Ruei Wu Hao Chang Florence T. Su Heng-Chun Liao Wanju Tseng Chun-Chih Liao F. Lai F. Hsu Furen Xiao 3DV MedIm 20 13 0 22 Jul 2020
A Computation-Efficient CNN System for High-Quality Brain Tumor Segmentation Yanming Sun Chunyan Wang 8 27 0 22 Jul 2020
Deep Learning Based Brain Tumor Segmentation: A Survey Zhihua Liu Lei Tong Zheheng Jiang Long Chen Feixiang Zhou Qianni Zhang Xiangrong Zhang Ling Li Huiyu Zhou 3DV 24 228 0 18 Jul 2020
Visual Explanation for Identification of the Brain Bases for Dyslexia on fMRI Data Laura Tomaz Da Silva N. B. Esper D. Ruiz Felipe Meneguzzi A. Buchweitz 6 4 0 17 Jul 2020
T-Basis: a Compact Representation for Neural Networks Anton Obukhov M. Rakhuba Stamatios Georgoulis Menelaos Kanakis Dengxin Dai Luc Van Gool 41 27 0 13 Jul 2020
MeDaS: An open-source platform as service to help break the walls between medicine and informatics Liang Zhang Johann Li Ping Li Xiaoyuan Lu Peiyi Shen Guangming Zhu Syed Afaq Ali Shah Bennamoun Kun Qian Björn W. Schuller MedIm 26 6 0 12 Jul 2020
Automatic Ischemic Stroke Lesion Segmentation from Computed Tomography Perfusion Images by Image Synthesis and Attention-Based Deep Neural Networks Guotai Wang Tao Song Q. Dong Mei Cui Ning Huang Shaoting Zhang DiffM MedIm 30 73 0 07 Jul 2020
PGD-UNet: A Position-Guided Deformable Network for Simultaneous Segmentation of Organs and Tumors Ziqiang Li Hong Pan Yaping Zhu •. A. K. Qin 12 20 0 02 Jul 2020
A Two-step Surface-based 3D Deep Learning Pipeline for Segmentation of Intracranial Aneurysms Xi Yang Ding Xia Taichi Kin Takeo Igarashi 3DPC 18 13 0 29 Jun 2020
Simulation of Brain Resection for Cavity Segmentation Using Self-Supervised and Semi-Supervised Learning Fernando Pérez-García R. Rodionov Ali Alim-Marvasti Rachel Sparks J. Duncan Sébastien Ourselin 14 10 0 28 Jun 2020
Bayesian Sampling Bias Correction: Training with the Right Loss Function Loic Le Folgoc V. Baltatzis A. Alansary S. Desai A. Devaraj ... O. M. Manzanera F. Kanavati A. Nair J. Schnabel Ben Glocker 11 0 0 24 Jun 2020
Post-DAE: Anatomically Plausible Segmentation via Post-Processing with Denoising Autoencoders Agostina J. Larrazabal Cesar E. Martínez Ben Glocker Enzo Ferrante 27 65 0 24 Jun 2020
Joint Left Atrial Segmentation and Scar Quantification Based on a DNN with Spatial Encoding and Shape Attention Lei Li Xin Weng Julia A. Schnabel Xiahai Zhuang 23 31 0 23 Jun 2020
Adaptive feature recombination and recalibration for semantic segmentation with Fully Convolutional Networks Sérgio Pereira Adriano Pinto Joana Amorim Alexandrine Ribeiro Victor Alves Carlos Alberto Silva 14 63 0 19 Jun 2020
Contrastive learning of global and local features for medical image segmentation with limited annotations K. Chaitanya Ertunc Erdil Neerav Karani E. Konukoglu SSL 30 550 0 18 Jun 2020
Stochastic Segmentation Networks: Modelling Spatially Correlated Aleatoric Uncertainty Miguel A. B. Monteiro Loic Le Folgoc Daniel Coelho De Castro Nick Pawlowski Bernardo Marques Konstantinos Kamnitsas Mark van der Wilk Ben Glocker UQCV BDL 25 113 0 10 Jun 2020
ComboNet: Combined 2D & 3D Architecture for Aorta Segmentation Orhan Akal Zhigang Peng G. Hermosillo 3DV 3DPC 22 4 0 09 Jun 2020
Cross-Domain Segmentation with Adversarial Loss and Covariate Shift for Biomedical Imaging Bora Baydar Savas Ozkan A. Emre Kavur N. Gezer M. Alper Selver G. Akar OOD 21 0 0 08 Jun 2020
A comparative study of 2D image segmentation algorithms for traumatic brain lesions using CT data from the ProTECTIII multicenter clinical trial Shruti Jadon Owen P. Leary I. Pan Tyler Harder D. Wright Lisa H. Merck D. Merck 38 27 0 01 Jun 2020
Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks Davood Karimi Simon K. Warfield Ali Gholipour MedIm 16 19 0 30 May 2020
Uncertainty Evaluation Metric for Brain Tumour Segmentation Raghav Mehta Angelos Filos Y. Gal Tal Arbel UQCV 27 16 0 28 May 2020
Bayesian convolutional neural network based MRI brain extraction on nonhuman primates Gengyan Zhao Fang Liu J. Oler M. Meyerand N. Kalin R. Birn 23 63 0 18 May 2020
Neural Architecture Search for Gliomas Segmentation on Multimodal Magnetic Resonance Imaging Feifan Wang 19 5 0 13 May 2020
Progressive Adversarial Semantic Segmentation A. Imran Demetri Terzopoulos MedIm 25 6 0 08 May 2020
Unsupervised Lesion Detection via Image Restoration with a Normative Prior Xiaoran Chen Suhang You K. Tezcan E. Konukoglu MedIm 24 135 0 30 Apr 2020
An Auto-Encoder Strategy for Adaptive Image Segmentation Evan M. Yu Juan Eugenio Iglesias Adrian Dalca M. Sabuncu 31 13 0 29 Apr 2020
A Survey on Incorporating Domain Knowledge into Deep Learning for Medical Image Analysis Xiaozhen Xie J. Niu Xuefeng Liu Zhengsu Chen Shaojie Tang Shui Yu 22 15 0 25 Apr 2020
A review: Deep learning for medical image segmentation using multi-modality fusion Tongxue Zhou S. Ruan S. Canu 24 504 0 22 Apr 2020
Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast Benjamin Billot Eleanor D. Robinson Adrian Dalca Juan Eugenio Iglesias 24 35 0 21 Apr 2020
Deep Cerebellar Nuclei Segmentation via Semi-Supervised Deep Context-Aware Learning from 7T Diffusion MRI Jinyoung Kim R. Patriat J. Kaplan Oren Solomon N. Harel 14 16 0 21 Apr 2020
A Spatially Constrained Deep Convolutional Neural Network for Nerve Fiber Segmentation in Corneal Confocal Microscopic Images using Inaccurate Annotations Ning Zhang S. Francis R. Malik Xin Chen 3DV 15 6 0 20 Apr 2020