Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 March 2016

Konstantinos Kamnitsas

Papers citing "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation"

42 / 592 papers shown

Title
DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation Guotai Wang Maria A. Zuluaga Wenqi Li R. Pratt P. Patel ... T. Doel A. David Jan Deprest Sebastien Ourselin Tom Kamiel Magda Vercauteren 24 405 0 03 Jul 2017
Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks Lucas Fidon Wenqi Li Luis C. García-Peraza-Herrera J. Ekanayake N. Kitchen Sebastien Ourselin Tom Kamiel Magda Vercauteren SSeg 32 149 0 03 Jul 2017
ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools Luis C. García-Peraza-Herrera Wenqi Li Lucas Fidon Caspar Gruijthuijsen A. Devreker ... Jan Deprest E. V. Poorten Danail Stoyanov Tom Kamiel Magda Vercauteren Sebastien Ourselin 21 128 0 25 Jun 2017
Scalable multimodal convolutional networks for brain tumour segmentation Lucas Fidon Wenqi Li Luis C. García-Peraza-Herrera J. Ekanayake N. Kitchen Sebastien Ourselin Tom Kamiel Magda Vercauteren 8 61 0 25 Jun 2017
Tversky loss function for image segmentation using 3D fully convolutional deep networks S. Salehi Deniz Erdogmus Ali Gholipour MedIm 11 823 0 18 Jun 2017
SegAN: Adversarial Network with Multi-scale $L_1$ Loss for Medical Image Segmentation Yuan Xue Tao Xu Han Zhang L. R. Long Xiaolei Huang MedIm GAN 24 541 0 06 Jun 2017
Extracting 3D Vascular Structures from Microscopy Images using Convolutional Recurrent Networks Russell Bates B. Irving B. Markelc Jakob Kaeppler R. Muschel Vicente Grau Julia A. Schnabel MedIm 17 20 0 26 May 2017
3D Convolutional Neural Networks for Brain Tumor Segmentation: A Comparison of Multi-resolution Architectures Adrià Casamitjana Santi Puch Asier Aduriz Verónica Vilaplana 3DV 18 45 0 23 May 2017
Optimal Multi-Object Segmentation with Novel Gradient Vector Flow Based Shape Priors Junjie Bai Abhay Shah Xiaodong Wu 29 7 0 22 May 2017
Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation Ozan Oktay Enzo Ferrante Konstantinos Kamnitsas M. Heinrich Wenjia Bai ... T. Dawes D. O’Regan Bernhard Kainz Ben Glocker Daniel Rueckert 18 654 0 22 May 2017
A deep level set method for image segmentation Min Tang Sepehr Valipour Zichen Vincent Zhang Dana Cobzas Martin Jägersand 14 30 0 17 May 2017
Automatic Brain Tumor Detection and Segmentation Using U-Net Based Fully Convolutional Networks Hao Dong Guang Yang Fangde Liu Yuanhan Mo Yike Guo 24 722 0 10 May 2017
Deep Learning for Medical Image Processing: Overview, Challenges and Future M. I. Razzak S. Naz Ahmad Zaib 15 987 0 22 Apr 2017
A 3D fully convolutional neural network and a random walker to segment the esophagus in CT T. Fechter S. Adebahr D. Baltas Ismail Ben Ayed Christian Desrosiers Jose Dolz 24 4 0 21 Apr 2017
Segmentation of the Proximal Femur from MR Images using Deep Convolutional Neural Networks Cem M. Deniz Siyuan Xiang S. Hallyburton A. Welbeck James S. Babb S. Honig Kyunghyun Cho G. Chang 18 147 0 20 Apr 2017
Semi-Supervised Deep Learning for Fully Convolutional Networks Christoph Baur Shadi Albarqouni Nassir Navab SSL 23 124 0 17 Mar 2017
Auto-context Convolutional Neural Network (Auto-Net) for Brain Extraction in Magnetic Resonance Imaging S. Salehi Deniz Erdogmus Ali Gholipour 3DV 21 6 0 06 Mar 2017
Perturb-and-MPM: Quantifying Segmentation Uncertainty in Dense Multi-Label CRFs Raphael Meier Urspeter Knecht Alain Jungo Roland Wiest M. Reyes 21 6 0 01 Mar 2017
Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation Mohsen Ghafoorian Alireza Mehrtash Tina Kapur N. Karssemeijer E. Marchiori ... Bram van Ginneken Andrey Fedorov Purang Abolmaesumi B. Platel W. Wells MedIm OOD 23 328 0 25 Feb 2017
Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks P. Christ Florian Ettlinger Felix Grün M. Elshaer Jana Lipkova ... Julian Holch Wieland Sommer R. Braren V. Heinemann Bjoern H. Menze MedIm 31 327 0 20 Feb 2017
A Survey on Deep Learning in Medical Image Analysis G. Litjens Thijs Kooi B. Bejnordi A. Setio F. Ciompi Mohsen Ghafoorian Jeroen van der Laak Bram van Ginneken C. I. Sánchez OOD 337 10,621 0 19 Feb 2017
Learning Normalized Inputs for Iterative Estimation in Medical Image Segmentation M. Drozdzal Gabriel Chartrand Eugene Vorontsov Lisa Di-Jorio A. Tang Adriana Romero Yoshua Bengio C. Pal Samuel Kadoury MedIm 20 218 0 16 Feb 2017
Improving automated multiple sclerosis lesion segmentation with a cascaded 3D convolutional neural network approach Sergi Valverde Mariano Cabezas E. Roura Sandra González-Villá D. Pareto J. Vilanova L. Ramió-Torrentá À. Rovira A. Oliver Xavier Llado 14 347 0 16 Feb 2017
A deep learning model integrating FCNNs and CRFs for brain tumor segmentation Xiaomei Zhao Yihong Wu Guidong Song Zhenye Li Yazhuo Zhang Yong-Xian Fan MedIm 11 669 0 15 Feb 2017
Reverse Classification Accuracy: Predicting Segmentation Performance in the Absence of Ground Truth V. Valindria I. Lavdas Wenjia Bai Konstantinos Kamnitsas E. Aboagye A. Rockall Daniel Rueckert Ben Glocker 21 127 0 11 Feb 2017
Spatial Aggregation of Holistically-Nested Convolutional Neural Networks for Automated Pancreas Localization and Segmentation H. Roth Le Lu Nathan S. Lay Adam P. Harrison A. Farag Andrew Sohn Ronald M. Summers 31 285 0 31 Jan 2017
CNN-based Segmentation of Medical Imaging Data Baris Kayalibay Grady Jensen Patrick van der Smagt SSeg 33 413 0 11 Jan 2017
Unsupervised domain adaptation in brain lesion segmentation with adversarial networks Konstantinos Kamnitsas Christian F. Baumgartner C. Ledig Virginia Newcombe Joanna P. Simpson ... David Menon A. Nori A. Criminisi Daniel Rueckert Ben Glocker OOD MedIm 30 477 0 28 Dec 2016
A Fixed-Point Model for Pancreas Segmentation in Abdominal CT Scans Yuyin Zhou Lingxi Xie Wei Shen Yan Wang Elliot K. Fishman Alan Yuille MedIm 41 36 0 25 Dec 2016
3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study J. Dolz Christian Desrosiers Ismail Ben Ayed 3DV 32 364 0 12 Dec 2016
Predicting brain age with deep learning from raw imaging data results in a reliable and heritable biomarker James H. Cole Rudra P. K. Poudel Dimosthenis Tsagkrasoulis M. Caan C. Steves T. Spector Giovanni Montana 18 690 0 08 Dec 2016
Deep Multi-scale Location-aware 3D Convolutional Neural Networks for Automated Detection of Lacunes of Presumed Vascular Origin Mohsen Ghafoorian N. Karssemeijer Tom Heskes M. Bergkamp Joost Wissink ... K. Keizer F.‐E. Leeuw Bram van Ginneken E. Marchiori B. Platel MedIm 212 123 0 24 Oct 2016
Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities Mohsen Ghafoorian N. Karssemeijer Tom Heskes I. V. Uden C. I. Sánchez G. Litjens F.‐E. Leeuw Bram van Ginneken E. Marchiori B. Platel SSeg 21 236 0 16 Oct 2016
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields P. Christ M. Elshaer Florian Ettlinger S. Tatavarty Marc Bickel ... Felix O. Hofmann M. D’Anastasi Wieland H. Sommer Seyed-Ahmad Ahmadi Bjoern H. Menze MedIm 22 631 0 07 Oct 2016
VoxResNet: Deep Voxelwise Residual Networks for Volumetric Brain Segmentation Hao Chen Qi Dou Lequan Yu Pheng-Ann Heng 23 140 0 21 Aug 2016
3D Deeply Supervised Network for Automatic Liver Segmentation from CT Volumes Qi Dou Hao Chen Yueming Jin Lequan Yu J. Qin Pheng-Ann Heng MedIm 23 343 0 03 Jul 2016
V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation Fausto Milletari Nassir Navab Seyed-Ahmad Ahmadi 114 8,552 0 15 Jun 2016
Deep Learning Convolutional Networks for Multiphoton Microscopy Vasculature Segmentation Petteri Teikari Marc A. Santos Charissa Poon K. Hynynen 3DV 21 48 0 08 Jun 2016
Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning Y. Gal Zoubin Ghahramani UQCV BDL 285 9,145 0 06 Jun 2015
SegNet: A Deep Convolutional Encoder-Decoder Architecture for Robust Semantic Pixel-Wise Labelling Vijay Badrinarayanan Ankur Handa R. Cipolla SSeg 169 793 0 27 May 2015
The Loss Surfaces of Multilayer Networks A. Choromańska Mikael Henaff Michaël Mathieu Gerard Ben Arous Yann LeCun ODL 183 1,185 0 30 Nov 2014
Improving neural networks by preventing co-adaptation of feature detectors Geoffrey E. Hinton Nitish Srivastava A. Krizhevsky Ilya Sutskever Ruslan Salakhutdinov VLM 266 7,638 0 03 Jul 2012