Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 March 2016

Konstantinos Kamnitsas

Papers citing "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation"

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Title
Direct Estimation of Pharmacokinetic Parameters from DCE-MRI using Deep CNN with Forward Physical Model Loss Cagdas Ulas Giles Tetteh M. Thrippleton Paul A. Armitage S. Makin Joanna M. Wardlaw Mike E. Davies Bjoern H. Menze MedIm 19 22 0 08 Apr 2018
Pancreas Segmentation in CT and MRI Images via Domain Specific Network Designing and Recurrent Neural Contextual Learning Jinzheng Cai Le Lu Fuyong Xing L. Yang MedIm 34 36 0 30 Mar 2018
Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection Seyed Raein Hashemi Seyed Sadegh Mohseni Salehi Deniz Erdogmus S. Prabhu Simon K. Warfield Ali Gholipour MedIm 18 163 0 28 Mar 2018
Graph Convolutions on Spectral Embeddings: Learning of Cortical Surface Data Karthik Gopinath Christian Desrosiers H. Lombaert 19 4 0 27 Mar 2018
Correcting differences in multi-site neuroimaging data using Generative Adversarial Networks H. Nguyen R. Morris Anthony W. Harris Mayuresh S. Korgoankar F. Ramos MedIm 11 8 0 26 Mar 2018
Multiple Sclerosis Lesion Segmentation from Brain MRI via Fully Convolutional Neural Networks Snehashis Roy J. Butman Daniel Reich P. Calabresi D. L. Pham MedIm 18 86 0 24 Mar 2018
Deep learning and its application to medical image segmentation H. Roth Chen Shen H. Oda M. Oda Y. Hayashi K. Misawa K. Mori MedIm SSeg 48 114 0 23 Mar 2018
Semantic Segmentation of Pathological Lung Tissue with Dilated Fully Convolutional Networks M. Anthimopoulos Stergios Christodoulidis L. Ebner Thomas Geiser Andreas Christe Stavroula Mougiakakou 14 113 0 16 Mar 2018
An application of cascaded 3D fully convolutional networks for medical image segmentation H. Roth H. Oda Xiangrong Zhou N. Shimizu Ying Yang Y. Hayashi M. Oda M. Fujiwara K. Misawa K. Mori 16 273 0 14 Mar 2018
Development and Validation of Deep Learning Algorithms for Detection of Critical Findings in Head CT Scans Sasank Chilamkurthy Rohit Ghosh Swetha Tanamala Mustafa Biviji N. Campeau V. Venugopal V. Mahajan Pooja Rao Prashant Warier 13 103 0 13 Mar 2018
A Deep Learning Approach for Pose Estimation from Volumetric OCT Data N. Gessert M. Schlüter Alexander Schlaefer 27 30 0 10 Mar 2018
Towards Clinical Diagnosis: Automated Stroke Lesion Segmentation on Multimodal MR Image Using Convolutional Neural Network Zhiyang Liu Chen Cao Shuxue Ding T. Han Zhiang Liu Sheng Liu 16 31 0 05 Mar 2018
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge Fabian Isensee Philipp Kickingereder Wolfgang Wick Martin Bendszus Klaus H. Maier-Hein 27 493 0 28 Feb 2018
Recurrent Residual Convolutional Neural Network based on U-Net (R2U-Net) for Medical Image Segmentation Md. Zahangir Alom Mahmudul Hasan C. Yakopcic T. Taha V. Asari SSeg 42 1,003 0 20 Feb 2018
Fully Convolutional Network Ensembles for White Matter Hyperintensities Segmentation in MR Images Hongwei Bran Li Gongfa Jiang Jianguo Zhang Ruixuan Wang Zhaolei Wang Weishi Zheng Bjoern H. Menze 34 194 0 14 Feb 2018
ASMCNN: An Efficient Brain Extraction Using Active Shape Model and Convolutional Neural Networks D. M. Nguyen Duy M. Nguyen T. T. N. Mai Thu Nguyen Khanh T. Tran Anh Triet Nguyen B. Pham Binh T. Nguyen 21 16 0 05 Feb 2018
Quantitative analysis of patch-based fully convolutional neural networks for tissue segmentation on brain magnetic resonance imaging J. Bernal Kaisar Kushibar Mariano Cabezas Sergi Valverde A. Oliver Xavier Llado 3DV 19 38 0 19 Jan 2018
MRI Tumor Segmentation with Densely Connected 3D CNN Lele Chen Yue Wu Adora M. DSouza A. Abidin A. Wismüller Chenliang Xu 39 119 0 18 Jan 2018
Fully Convolutional Multi-scale Residual DenseNets for Cardiac Segmentation and Automated Cardiac Diagnosis using Ensemble of Classifiers Mahendra Khened Alex Varghese Ganapathy Krishnamurthi 24 310 0 16 Jan 2018
QuickNAT: A Fully Convolutional Network for Quick and Accurate Segmentation of Neuroanatomy Abhijit Guha Roy Sailesh Conjeti Nassir Navab Christian Wachinger 38 223 0 12 Jan 2018
Brain Tumor Segmentation Based on Refined Fully Convolutional Neural Networks with A Hierarchical Dice Loss Jiachi Zhang Xiaolei Shen Tianqi Zhuo Hong Zhou 27 39 0 25 Dec 2017
Automatic Renal Segmentation in DCE-MRI using Convolutional Neural Networks M. Haghighi Simon K. Warfield Sila Kurugol MedIm 30 36 0 19 Dec 2017
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network E. Bonmati Yipeng Hu Nikhil Sindhwani H. Dietz Jan D'hooge D. Barratt Jan Deprest Tom Kamiel Magda Vercauteren 29 30 0 18 Dec 2017
Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation Jose Dolz Christian Desrosiers Li Wang Jing Yuan Dinggang Shen Ismail Ben Ayed 3DV 48 113 0 14 Dec 2017
Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review J. Bernal Kaisar Kushibar Daniel S. Asfaw Sergi Valverde A. Oliver Robert Martí Xavier Llado 22 349 0 11 Dec 2017
Deep learning analysis of the myocardium in coronary CT angiography for identification of patients with functionally significant coronary artery stenosis M. Zreik Nikolas Lessmann R. V. Hamersvelt J. Wolterink M. Voskuil M. Viergever T. Leiner Ivana Išgum 24 173 0 24 Nov 2017
Applications of Deep Learning and Reinforcement Learning to Biological Data M. S. M. Mahmud M. S. Kaiser Amir Hussain S. Vassanelli OffRL AI4CE 41 641 0 10 Nov 2017
Towards Automatic 3D Shape Instantiation for Deployed Stent Grafts: 2D Multiple-class and Class-imbalance Marker Segmentation with Equally-weighted Focal U-Net Xiao-Yun Zhou Su-Lin Lee Guang-Zhong Yang 3DPC 29 34 0 04 Nov 2017
Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation Konstantinos Kamnitsas Wenjia Bai Enzo Ferrante Jingyu Sun Matthew Sinclair ... Martin Rajchl Matthew C. H. Lee Bernhard Kainz Daniel Rueckert Ben Glocker 3DV AAML OOD 11 432 0 04 Nov 2017
Deep Learning and Conditional Random Fields-based Depth Estimation and Topographical Reconstruction from Conventional Endoscopy Faisal Mahmood Nicholas J. Durr MedIm 35 142 0 30 Oct 2017
SEGCloud: Semantic Segmentation of 3D Point Clouds Lyne P. Tchapmi Chris Choy Iro Armeni JunYoung Gwak Silvio Savarese 3DPC 9 748 0 20 Oct 2017
Isointense Infant Brain Segmentation with a Hyper-dense Connected Convolutional Neural Network Jose Dolz Ismail Ben Ayed Jing Yuan Christian Desrosiers 24 10 0 16 Oct 2017
Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning Guotai Wang Wenqi Li Maria A. Zuluaga R. Pratt P. Patel ... T. Doel A. David Jan Deprest Sebastien Ourselin Tom Kamiel Magda Vercauteren 41 686 0 11 Oct 2017
Neural Multi-Atlas Label Fusion: Application to Cardiac MR Images Heran Yang Jian Sun Huibin Li Lisheng Wang Zongben Xu 33 27 0 27 Sep 2017
Recurrent Saliency Transformation Network: Incorporating Multi-Stage Visual Cues for Small Organ Segmentation Qihang Yu Lingxi Xie Yan Wang Yuyin Zhou Elliot K. Fishman Alan Yuille MedIm 23 3 0 13 Sep 2017
Sequential 3D U-Nets for Biologically-Informed Brain Tumor Segmentation Andrew Beers Ken Chang James M. Brown Emmett Sartor C. P. Mammen Elizabeth R Gerstner Bruce Rosen Jayashree Kalpathy-Cramer 11 49 0 09 Sep 2017
An Adaptive Sampling Scheme to Efficiently Train Fully Convolutional Networks for Semantic Segmentation L. Berger E. Hyde M. Jorge Cardoso Sebastien Ourselin SSeg 14 40 0 08 Sep 2017
Medical Image Analysis using Convolutional Neural Networks: A Review Syed Muhammad Anwar Muhammad Majid A. Qayyum Muhammad Awais M. Alnowami Muhammad Khurram Khan MedIm 13 1,036 0 04 Sep 2017
Gaussian Filter in CRF Based Semantic Segmentation Yichi Gu Qisheng Wu Jing Li K. Cheng SSeg 16 0 0 02 Sep 2017
Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 16 479 0 01 Sep 2017
High Efficient Reconstruction of Single-shot T2 Mapping from OverLapping-Echo Detachment Planar Imaging Based on Deep Residual Network C. Cai Yiqing Zeng Chao Wang S. Cai Jun Zhang Zhong Chen Xinghao Ding J. Zhong 26 1 0 17 Aug 2017
Segmentation of Glioma Tumors in Brain Using Deep Convolutional Neural Network S. Hussain Syed Muhammad Anwar Muhammad Majid 20 207 0 01 Aug 2017
Automatic segmentation of the intracranialvolume in fetal MR images Nadieh Khalili P. Moeskops N. Claessens S. Scherpenzeel Elise Turk R. Heus M. Benders M. Viergever J. Pluim I. Išgum 14 15 0 31 Jul 2017
Synthesis of Positron Emission Tomography (PET) Images via Multi-channel Generative Adversarial Networks (GANs) Lei Bi Jinman Kim Ashnil Kumar D. Feng M. Fulham MedIm GAN 13 136 0 31 Jul 2017
EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation A. Amidi Shervine Amidi D. Vlachakis V. Megalooikonomou Nikos Paragios E. Zacharaki MedIm 38 85 0 19 Jul 2017
Improving Deep Pancreas Segmentation in CT and MRI Images via Recurrent Neural Contextual Learning and Direct Loss Function Jinzheng Cai Le Lu Yuanpu Xie Fuyong Xing L. Yang MedIm SSeg 35 132 0 16 Jul 2017
Expected exponential loss for gaze-based video and volume ground truth annotation Laurent Lejeune Mario Christoudias Raphael Sznitman MedIm 26 7 0 16 Jul 2017
Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations Carole H Sudre Wenqi Li Tom Kamiel Magda Vercauteren Sébastien Ourselin M. Jorge Cardoso SSeg 27 2,121 0 11 Jul 2017
Adversarial training and dilated convolutions for brain MRI segmentation P. Moeskops M. Veta Maxime W. Lafarge K. Eppenhof J. Pluim MedIm GAN 30 132 0 11 Jul 2017
On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task Wenqi Li Guotai Wang Lucas Fidon Sebastien Ourselin M. Jorge Cardoso Tom Kamiel Magda Vercauteren 3DV 30 337 0 06 Jul 2017