BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers

29 April 2024

Ran Xu

Papers citing "BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers"

34 / 34 papers shown

Title
SimRAG: Self-Improving Retrieval-Augmented Generation for Adapting Large Language Models to Specialized Domains Ran Xu Hui Liu Sreyashi Nag Zhenwei Dai Yaochen Xie ... Chen Luo Yang Li Joyce C. Ho Carl Yang Qi He RALM 164 11 0 28 Jan 2025
AutoMIR: Effective Zero-Shot Medical Information Retrieval without Relevance Labels Lei Li Xiangxu Zhang Xiao Zhou Zheng Liu VLM RALM 112 3 0 26 Oct 2024
NV-Embed: Improved Techniques for Training LLMs as Generalist Embedding Models Chankyu Lee Rajarshi Roy Mengyao Xu Jonathan Raiman Mohammad Shoeybi Bryan Catanzaro Ming-Yu Liu RALM 266 202 0 27 May 2024
PaperQA: Retrieval-Augmented Generative Agent for Scientific Research Jakub Lála Odhran O'Donoghue Aleksandar Shtedritski Sam Cox Samuel G. Rodriques Andrew D. White RALM 124 87 0 08 Dec 2023
MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval Qiao Jin Won Kim Qingyu Chen Donald C. Comeau Lana Yeganova John Wilbur Zhiyong Lu LM&MA MedIm 84 115 0 02 Jul 2023
Pre-training Multi-task Contrastive Learning Models for Scientific Literature Understanding Yu Zhang Hao Cheng Zhihong Shen Xiaodong Liu Yejiang Wang Jianfeng Gao 74 14 0 23 May 2023
Text Embeddings by Weakly-Supervised Contrastive Pre-training Liang Wang Nan Yang Xiaolong Huang Binxing Jiao Linjun Yang Daxin Jiang Rangan Majumder Furu Wei VLM 246 622 0 07 Dec 2022
Task-aware Retrieval with Instructions Akari Asai Timo Schick Patrick Lewis Xilun Chen Gautier Izacard Sebastian Riedel Hannaneh Hajishirzi Wen-tau Yih 97 96 0 16 Nov 2022
RetroMAE: Pre-Training Retrieval-oriented Language Models Via Masked Auto-Encoder Shitao Xiao Zheng Liu Yingxia Shao Bo Zhao RALM 276 125 0 24 May 2022
SGPT: GPT Sentence Embeddings for Semantic Search Niklas Muennighoff RALM 158 188 0 17 Feb 2022
Text and Code Embeddings by Contrastive Pre-Training Arvind Neelakantan Tao Xu Raul Puri Alec Radford Jesse Michael Han ... Tabarak Khan Toki Sherbakov Joanne Jang Peter Welinder Lilian Weng SSL AI4TS 374 442 0 24 Jan 2022
Improving Biomedical Information Retrieval with Neural Retrievers Man Luo Arindam Mitra Tejas Gokhale Chitta Baral 71 34 0 19 Jan 2022
Unsupervised Dense Information Retrieval with Contrastive Learning Gautier Izacard Mathilde Caron Lucas Hosseini Sebastian Riedel Piotr Bojanowski Armand Joulin Edouard Grave RALM 204 920 0 16 Dec 2021
Large Dual Encoders Are Generalizable Retrievers Jianmo Ni Chen Qu Jing Lu Zhuyun Dai Gustavo Hernández Ábrego ... Vincent Zhao Yi Luan Keith B. Hall Ming-Wei Chang Yinfei Yang DML 167 461 0 15 Dec 2021
GPL: Generative Pseudo Labeling for Unsupervised Domain Adaptation of Dense Retrieval Kexin Wang Nandan Thakur Nils Reimers Iryna Gurevych VLM 138 157 0 14 Dec 2021
GooAQ: Open Question Answering with Diverse Answer Types Daniel Khashabi Amos Ng Tushar Khot Ashish Sabharwal Hannaneh Hajishirzi Chris Callison-Burch 63 54 0 18 Apr 2021
BEIR: A Heterogenous Benchmark for Zero-shot Evaluation of Information Retrieval Models Nandan Thakur Nils Reimers Andreas Rucklé Abhishek Srivastava Iryna Gurevych VLM 425 1,052 0 17 Apr 2021
Effective Transfer Learning for Identifying Similar Questions: Matching User Questions to COVID-19 FAQs Clara H. McCreery Namit Katariya A. Kannan Manish Chablani X. Amatriain MedIm OOD 44 76 0 04 Aug 2020
Approximate Nearest Neighbor Negative Contrastive Learning for Dense Text Retrieval Lee Xiong Chenyan Xiong Ye Li Kwok-Fung Tang Jialin Liu Paul N. Bennett Junaid Ahmed Arnold Overwijk 141 1,232 0 01 Jul 2020
Fact or Fiction: Verifying Scientific Claims David Wadden Shanchuan Lin Kyle Lo Lucy Lu Wang Madeleine van Zuylen Arman Cohan Hannaneh Hajishirzi HAI 156 459 0 30 Apr 2020
Don't Stop Pretraining: Adapt Language Models to Domains and Tasks Suchin Gururangan Ana Marasović Swabha Swayamdipta Kyle Lo Iz Beltagy Doug Downey Noah A. Smith VLM AI4CE CLL 164 2,435 0 23 Apr 2020
CORD-19: The COVID-19 Open Research Dataset Lucy Lu Wang Kyle Lo Yoganand Chandrasekhar Russell Reas Jiangjiang Yang ... Boya Xie Douglas A. Raymond Daniel S. Weld Oren Etzioni Sebastian Kohlmeier 101 811 0 22 Apr 2020
SPECTER: Document-level Representation Learning using Citation-informed Transformers Arman Cohan Sergey Feldman Iz Beltagy Doug Downey Daniel S. Weld AI4TS 84 556 0 15 Apr 2020
MedDialog: Two Large-scale Medical Dialogue Datasets Xuehai He Shu Chen Zeqian Ju Xiangyu Dong Hongchao Fang ... Ruisi Zhang Ruoyu Zhang Meng Zhou Penghui Zhu P. Xie LM&MA MedIm 71 179 0 07 Apr 2020
CCNet: Extracting High Quality Monolingual Datasets from Web Crawl Data Guillaume Wenzek Marie-Anne Lachaux Alexis Conneau Vishrav Chaudhary Francisco Guzmán Armand Joulin Edouard Grave 104 658 0 01 Nov 2019
Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer Colin Raffel Noam M. Shazeer Adam Roberts Katherine Lee Sharan Narang Michael Matena Yanqi Zhou Wei Li Peter J. Liu AIMat 485 20,317 0 23 Oct 2019
Learning Dense Representations for Entity Retrieval D. Gillick Sayali Kulkarni L. Lansing Alessandro Presta Jason Baldridge Eugene Ie Diego Garcia-Olano RALM 79 208 0 23 Sep 2019
PubMedQA: A Dataset for Biomedical Research Question Answering Qiao Jin Bhuwan Dhingra Zhengping Liu William W. Cohen Xinghua Lu 398 912 0 13 Sep 2019
ELI5: Long Form Question Answering Angela Fan Yacine Jernite Ethan Perez David Grangier Jason Weston Michael Auli AI4MH ELM 106 624 0 22 Jul 2019
Synthetic QA Corpora Generation with Roundtrip Consistency Chris Alberti D. Andor Emily Pitler Jacob Devlin Michael Collins SyDa 70 249 0 12 Jun 2019
HotpotQA: A Dataset for Diverse, Explainable Multi-hop Question Answering Zhilin Yang Peng Qi Saizheng Zhang Yoshua Bengio William W. Cohen Ruslan Salakhutdinov Christopher D. Manning RALM 191 2,694 0 25 Sep 2018
FEVER: a large-scale dataset for Fact Extraction and VERification James Thorne Andreas Vlachos Christos Christodoulopoulos Arpit Mittal HILM 161 1,666 0 14 Mar 2018
MS MARCO: A Human Generated MAchine Reading COmprehension Dataset Payal Bajaj Daniel Fernando Campos Nick Craswell Li Deng Jianfeng Gao ... Mir Rosenberg Xia Song Alina Stoica Saurabh Tiwary Tong Wang RALM 156 2,744 0 28 Nov 2016
A large annotated corpus for learning natural language inference Samuel R. Bowman Gabor Angeli Christopher Potts Christopher D. Manning 326 4,294 0 21 Aug 2015