v1v2v3 (latest)

Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editing

21 December 2022

Jian Tang

Papers citing "Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editing"

37 / 37 papers shown

Title
Bridging Molecular Graphs and Large Language Models Runze Wang Mingqi Yang Yanming Shen 132 0 0 05 Mar 2025
BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning Haiteng Zhao Chang Ma FangZhi Xu Lingpeng Kong Zhi-Hong Deng LRM 97 3 0 23 Feb 2025
RAG-Enhanced Collaborative LLM Agents for Drug Discovery Namkyeong Lee Edward De Brouwer Ehsan Hajiramezanali Tommaso Biancalani Chanyoung Park Gabriele Scalia 120 0 0 22 Feb 2025
Exploring Hierarchical Molecular Graph Representation in Multimodal LLMs Chengxin Hu Hao Li Yihe Yuan Jing Li Ivor Tsang 84 1 0 07 Nov 2024
Chemical Language Model Linker: blending text and molecules with modular adapters Yifan Deng Spencer S. Ericksen Anthony Gitter 130 2 0 26 Oct 2024
A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining Shengchao Liu Weitao Du Zhiming Ma Hongyu Guo Jian Tang 75 33 0 28 May 2023
A Text-guided Protein Design Framework Shengchao Liu Yanjing Li Zhuoxinran Li A. Gitter Yutao Zhu ... Arvind Ramanathan Chaowei Xiao Jian Tang Hongyu Guo Anima Anandkumar 108 64 0 09 Feb 2023
Retrieval-based Controllable Molecule Generation Zichao Wang Weili Nie Zhuoran Qiao Chaowei Xiao Richard Baraniuk Anima Anandkumar 85 41 0 23 Aug 2022
Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching Shengchao Liu Hongyu Guo Jian Tang 64 80 0 27 Jun 2022
MineDojo: Building Open-Ended Embodied Agents with Internet-Scale Knowledge Linxi Fan Guanzhi Wang Yunfan Jiang Ajay Mandlekar Yuncong Yang Haoyi Zhu Andrew Tang De-An Huang Yuke Zhu Anima Anandkumar LM&Ro 131 383 0 17 Jun 2022
Evaluating Self-Supervised Learning for Molecular Graph Embeddings Hanchen Wang Jean Kaddour Shengchao Liu Jian Tang Joan Lasenby Qi Liu 102 21 0 16 Jun 2022
Photorealistic Text-to-Image Diffusion Models with Deep Language Understanding Chitwan Saharia William Chan Saurabh Saxena Lala Li Jay Whang ... Raphael Gontijo-Lopes Tim Salimans Jonathan Ho David J Fleet Mohammad Norouzi VLM 437 6,023 0 23 May 2022
Hierarchical Text-Conditional Image Generation with CLIP Latents Aditya A. Ramesh Prafulla Dhariwal Alex Nichol Casey Chu Mark Chen VLM DiffM 407 6,866 0 13 Apr 2022
Pre-Trained Language Models for Interactive Decision-Making Shuang Li Xavier Puig Chris Paxton Yilun Du Clinton Jia Wang ... Anima Anandkumar Jacob Andreas Igor Mordatch Antonio Torralba Yuke Zhu LM&Ro 98 259 0 03 Feb 2022
DrugOOD: Out-of-Distribution (OOD) Dataset Curator and Benchmark for AI-aided Drug Discovery -- A Focus on Affinity Prediction Problems with Noise Annotations Yuanfeng Ji Lu Zhang Jiaxiang Wu Bing Wu Long-Kai Huang ... Ping Luo Shuigeng Zhou Junzhou Huang Peilin Zhao Yatao Bian OOD 120 74 0 24 Jan 2022
GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models Alex Nichol Prafulla Dhariwal Aditya A. Ramesh Pranav Shyam Pamela Mishkin Bob McGrew Ilya Sutskever Mark Chen 356 3,605 0 20 Dec 2021
Pre-training Molecular Graph Representation with 3D Geometry Shengchao Liu Hanchen Wang Weiyang Liu Joan Lasenby Hongyu Guo Jian Tang 182 318 0 07 Oct 2021
Geometric Deep Learning on Molecular Representations Kenneth Atz F. Grisoni G. Schneider AI4CE 92 299 0 26 Jul 2021
Open-vocabulary Object Detection via Vision and Language Knowledge Distillation Xiuye Gu Nayeon Lee Weicheng Kuo Huayu Chen VLM ObjD 283 917 0 28 Apr 2021
StyleCLIP: Text-Driven Manipulation of StyleGAN Imagery Or Patashnik Zongze Wu Eli Shechtman Daniel Cohen-Or Dani Lischinski CLIP VLM 115 1,207 0 31 Mar 2021
Learning Transferable Visual Models From Natural Language Supervision Alec Radford Jong Wook Kim Chris Hallacy Aditya A. Ramesh Gabriel Goh ... Amanda Askell Pamela Mishkin Jack Clark Gretchen Krueger Ilya Sutskever CLIP VLM 931 29,436 0 26 Feb 2021
E(n) Equivariant Graph Neural Networks Victor Garcia Satorras Emiel Hoogeboom Max Welling 111 1,020 0 19 Feb 2021
Contrastive Multi-View Representation Learning on Graphs Kaveh Hassani Amir Hosein Khas Ahmadi SSL 230 1,302 0 10 Jun 2020
GEOM: Energy-annotated molecular conformations for property prediction and molecular generation Simon Axelrod Rafael Gómez-Bombarelli 3DV AI4CE 92 217 0 09 Jun 2020
Hierarchical Generation of Molecular Graphs using Structural Motifs Wengong Jin Regina Barzilay Tommi Jaakkola 79 288 0 08 Feb 2020
InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization Fan-Yun Sun Jordan Hoffmann Vikas Verma Jian Tang SSL 153 862 0 31 Jul 2019
Strategies for Pre-training Graph Neural Networks Weihua Hu Bowen Liu Joseph Gomes Marinka Zitnik Percy Liang Vijay S. Pande J. Leskovec SSL AI4CE 116 1,404 0 29 May 2019
SciBERT: A Pretrained Language Model for Scientific Text Iz Beltagy Kyle Lo Arman Cohan 139 2,974 0 26 Mar 2019
A Style-Based Generator Architecture for Generative Adversarial Networks Tero Karras S. Laine Timo Aila 589 10,561 0 12 Dec 2018
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding Jacob Devlin Ming-Wei Chang Kenton Lee Kristina Toutanova VLM SSL SSeg 1.8K 94,891 0 11 Oct 2018
How Powerful are Graph Neural Networks? Keyulu Xu Weihua Hu J. Leskovec Stefanie Jegelka GNN 243 7,653 0 01 Oct 2018
Representation Learning with Contrastive Predictive Coding Aaron van den Oord Yazhe Li Oriol Vinyals DRL SSL 320 10,302 0 10 Jul 2018
N-Gram Graph: Simple Unsupervised Representation for Graphs, with Applications to Molecules Shengchao Liu M. F. Demirel Yingyu Liang GNN NAI 54 195 0 24 Jun 2018
Construction of the Literature Graph in Semantic Scholar Bridger Waleed Ammar Dirk Groeneveld Chandra Bhagavatula Iz Beltagy Miles Crawford ... Lucy Lu Wang Christopher Wilhelm Zheng Yuan Madeleine van Zuylen Oren Etzioni GNN 70 396 0 06 May 2018
Attention Is All You Need Ashish Vaswani Noam M. Shazeer Niki Parmar Jakob Uszkoreit Llion Jones Aidan Gomez Lukasz Kaiser Illia Polosukhin 3DV 713 131,652 0 12 Jun 2017
MoleculeNet: A Benchmark for Molecular Machine Learning Zhenqin Wu Bharath Ramsundar Evan N. Feinberg Joseph Gomes C. Geniesse Aneesh S. Pappu K. Leswing Vijay S. Pande OOD 337 1,827 0 02 Mar 2017
Convolutional Networks on Graphs for Learning Molecular Fingerprints David Duvenaud D. Maclaurin J. Aguilera-Iparraguirre Rafael Gómez-Bombarelli Timothy D. Hirzel Alán Aspuru-Guzik Ryan P. Adams GNN 223 3,352 0 30 Sep 2015