A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language

12 September 2022

Jiangmeng Li

Papers citing "A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language"

34 / 84 papers shown

Title
InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery He Cao Zijing Liu Xingyu Lu Yuan Yao Yu Li 33 58 0 27 Nov 2023
A Survey of Graph Meets Large Language Model: Progress and Future Directions Yuhan Li Zhixun Li Peisong Wang Jia Li Xiangguo Sun Hongtao Cheng Jeffrey Xu Yu 46 56 0 21 Nov 2023
Advancing Drug Discovery with Enhanced Chemical Understanding via Asymmetric Contrastive Multimodal Learning Hao Xu Yifei Wang Yunrui Li Pengyu Hong Pengyu Hong 33 3 0 11 Nov 2023
Defining a New NLP Playground Sha Li Chi Han Pengfei Yu Carl Edwards Manling Li ... Yi R. Fung Charles Yu Joel R. Tetreault Eduard H. Hovy Heng Ji 41 5 0 31 Oct 2023
Monte Carlo Thought Search: Large Language Model Querying for Complex Scientific Reasoning in Catalyst Design Henry W Sprueill Carl Edwards Mariefel V. Olarte Udishnu Sanyal Heng Ji Sutanay Choudhury LRM 34 10 0 22 Oct 2023
MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter Zhiyuan Liu Sihang Li Yancheng Luo Hao Fei Yixin Cao Kenji Kawaguchi Xiang Wang Tat-Seng Chua 38 81 0 19 Oct 2023
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations Qizhi Pei Wei Zhang Jinhua Zhu Kehan Wu Kaiyuan Gao Lijun Wu Yingce Xia Rui Yan 36 62 0 11 Oct 2023
SNIP: Bridging Mathematical Symbolic and Numeric Realms with Unified Pre-training Kazem Meidani Parshin Shojaee Chandan K. Reddy A. Farimani 26 18 0 03 Oct 2023
Mining Patents with Large Language Models Elucidates the Chemical Function Landscape Clayton W. Kosonocky Claus O. Wilke E. Marcotte A. D. Ellington 39 3 0 15 Sep 2023
GIT-Mol: A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text Peng Liu Yiming Ren Jun Tao Zhixiang Ren AI4CE 33 79 0 14 Aug 2023
Extracting Molecular Properties from Natural Language with Multimodal Contrastive Learning Romain Lacombe Andrew Gaut Jeff He D. Lüdeke Kateryna Pistunova 28 2 0 22 Jul 2023
Interactive Molecular Discovery with Natural Language Zheni Zeng Bangchen Yin Shipeng Wang Jia-Rou Liu Cheng Yang Haishen Yao Xingzhi Sun Maosong Sun Guotong Xie Zhiyuan Liu AI4CE 32 12 0 21 Jun 2023
SynerGPT: In-Context Learning for Personalized Drug Synergy Prediction and Drug Design Carl Edwards Aakanksha Naik Tushar Khot Martin D. Burke Heng Ji Tom Hope 33 15 0 19 Jun 2023
Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials Shengchao Liu Weitao Du Yanjing Li Zhuoxinran Li Zhiling Zheng ... Anima Anandkumar C. Borgs J. Chayes Hongyu Guo Jian Tang AI4CE 38 20 0 15 Jun 2023
Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models Yin Fang Xiaozhuan Liang Ningyu Zhang Kangwei Liu Rui Huang Zhuo Chen Xiaohui Fan Huajun Chen 23 77 0 13 Jun 2023
Empowering Molecule Discovery for Molecule-Caption Translation with Large Language Models: A ChatGPT Perspective Jiatong Li Yunqing Liu Wenqi Fan Xiao Wei Hui Liu Jiliang Tang Qing Li 31 84 0 11 Jun 2023
MolFM: A Multimodal Molecular Foundation Model Yi Luo Kai Yang Massimo Hong Xingyi Liu Zaiqing Nie 43 37 0 06 Jun 2023
Bi-level Contrastive Learning for Knowledge-Enhanced Molecule Representations Pengcheng Jiang Cao Xiao Tianfan Fu Jimeng Sun 50 3 0 02 Jun 2023
ChatGPT-powered Conversational Drug Editing Using Retrieval and Domain Feedback Shengchao Liu Jiong Wang Yijin Yang Chengpeng Wang Ling Liu Hongyu Guo Chaowei Xiao LM&MA KELM AI4MH 36 39 0 29 May 2023
GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning Haiteng Zhao Shengchao Liu Chang Ma Hannan Xu Jie Fu Zhihong Deng Lingpeng Kong Qi Liu 31 61 0 28 May 2023
MolXPT: Wrapping Molecules with Text for Generative Pre-training Zequn Liu Wei Zhang Yingce Xia Lijun Wu Shufang Xie Tao Qin M. Zhang Tie-Yan Liu 34 67 0 18 May 2023
Towards Unified AI Drug Discovery with Multiple Knowledge Modalities Yi Luo Xing Yi Liu Kai Yang Kui Huang Massimo Hong Jiahuan Zhang Yushuai Wu Zaiqing Nie OffRL 45 4 0 17 Apr 2023
Computational modeling of semantic change Nina Tahmasebi Haim Dubossarsky 34 6 0 13 Apr 2023
A Comprehensive Survey of AI-Generated Content (AIGC): A History of Generative AI from GAN to ChatGPT Yihan Cao Siyu Li Yixin Liu Zhiling Yan Yutong Dai Philip S. Yu Lichao Sun 38 508 0 07 Mar 2023
A Text-guided Protein Design Framework Shengchao Liu Yanjing Li Zhuoxinran Li A. Gitter Yutao Zhu ... Arvind Ramanathan Chaowei Xiao Jian Tang Hongyu Guo Anima Anandkumar 70 61 0 09 Feb 2023
Domain-Agnostic Molecular Generation with Chemical Feedback Yin Fang Ningyu Zhang Zhuo Chen Lingbing Guo Xiaohui Fan Huajun Chen 41 11 0 26 Jan 2023
Foundations and Trends in Multimodal Machine Learning: Principles, Challenges, and Open Questions Paul Pu Liang Amir Zadeh Louis-Philippe Morency 18 62 0 07 Sep 2022
Knowledge-informed Molecular Learning: A Survey on Paradigm Transfer Yin Fang Zhuo Chen Xiaohui Fan Qiang Zhang 51 3 0 17 Feb 2022
Keeping it Simple: Language Models can learn Complex Molecular Distributions Daniel Flam-Shepherd Kevin Zhu A. Aspuru‐Guzik 133 142 0 06 Dec 2021
Chemical-Reaction-Aware Molecule Representation Learning Hongwei Wang Weijian Li Xiaomeng Jin Kyunghyun Cho Heng Ji Jiawei Han Martin D. Burke 107 57 0 21 Sep 2021
Scaling Up Visual and Vision-Language Representation Learning With Noisy Text Supervision Chao Jia Yinfei Yang Ye Xia Yi-Ting Chen Zarana Parekh Hieu H. Pham Quoc V. Le Yun-hsuan Sung Zhen Li Tom Duerig VLM CLIP 337 3,720 0 11 Feb 2021
GraphDF: A Discrete Flow Model for Molecular Graph Generation Youzhi Luo Keqiang Yan Shuiwang Ji DRL 185 188 0 01 Feb 2021
Junction Tree Variational Autoencoder for Molecular Graph Generation Wengong Jin Regina Barzilay Tommi Jaakkola 242 1,340 0 12 Feb 2018
MoleculeNet: A Benchmark for Molecular Machine Learning Zhenqin Wu Bharath Ramsundar Evan N. Feinberg Joseph Gomes C. Geniesse Aneesh S. Pappu K. Leswing Vijay S. Pande OOD 251 1,787 0 02 Mar 2017