Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images

20 April 2020

Ming Y. Lu

Drew F. K. Williamson

Papers citing "Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images"

50 / 168 papers shown

Title
Benchmarking common uncertainty estimation methods with histopathological images under domain shift and label noise H. A. Mehrtens Alexander Kurz Tabea-Clara Bucher T. Brinker OOD UQCV 205 11 0 03 Jan 2023
Weakly-Supervised Deep Learning Model for Prostate Cancer Diagnosis and Gleason Grading of Histopathology Images M. Behzadi M. Madani Hanzhang Wang Jun Bai Ankit Bhardwaj A. Tarakanova H. Yamase Ga Hie Nam S. Nabavi MedIm 46 11 0 25 Dec 2022
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images Roozbeh Bazargani L. Fazli L. Goldenberg M. Gleave A. Bashashati Septimiu Salcudean MedIm 38 7 0 17 Dec 2022
Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays Jonas Ammeling L. Schmidt J. Ganz T. Niedermair Christoph Brochhausen-Delius C. Schulz Katharina Breininger Marc Aubreville 23 1 0 15 Dec 2022
AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images Pei Liu Luping Ji Feng Ye Bo Fu 36 27 0 13 Dec 2022
Giga-SSL: Self-Supervised Learning for Gigapixel Images Tristan Lazard Marvin Lerousseau Etienne Decencière Thomas Walter 20 18 0 06 Dec 2022
RLogist: Fast Observation Strategy on Whole-slide Images with Deep Reinforcement Learning Boxuan Zhao Jun Zhang Deheng Ye Jiancheng Cao Xiao Han Qiang Fu Wei Yang OffRL 31 9 0 04 Dec 2022
Language models are good pathologists: using attention-based sequence reduction and text-pretrained transformers for efficient WSI classification Juan Pisula Katarzyna Bozek VLM MedIm 36 3 0 14 Nov 2022
Embedding Space Augmentation for Weakly Supervised Learning in Whole-Slide Images Imaad Zaffar Guillaume Jaume Nasir M. Rajpoot Faisal Mahmood 43 4 0 31 Oct 2022
Iterative Patch Selection for High-Resolution Image Recognition Benjamin Bergner C. Lippert Aravindh Mahendran 25 12 0 24 Oct 2022
Multiple Instance Learning via Iterative Self-Paced Supervised Contrastive Learning Kangning Liu Weicheng Zhu Yiqiu Shen Sheng Liu N. Razavian Krzysztof J. Geras C. Fernandez‐Granda SSL 33 25 0 17 Oct 2022
FLamby: Datasets and Benchmarks for Cross-Silo Federated Learning in Realistic Healthcare Settings Jean Ogier du Terrail Samy Ayed Edwige Cyffers Felix Grimberg Chaoyang He ... Sai Praneeth Karimireddy Marco Lorenzi Giovanni Neglia Marc Tommasi M. Andreux FedML 47 144 0 10 Oct 2022
Bi-directional Weakly Supervised Knowledge Distillation for Whole Slide Image Classification Linhao Qu Xiao-Zhuo Luo Manning Wang Zhijian Song WSOD 31 59 0 07 Oct 2022
Region-guided CycleGANs for Stain Transfer in Whole Slide Images Joseph Boyd I. Villa M. Mathieu Eric Deutsch Nikos Paragios Maria Vakalopoulou Stergios Christodoulidis MedIm 24 13 0 26 Aug 2022
EGFR Mutation Prediction of Lung Biopsy Images using Deep Learning R. Gupta Shivani Nandgaonkar Nikhil Cherian Kurian S. Rane A. Sethi MedIm 39 7 0 26 Aug 2022
Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysis Linhao Qu Siyu Liu Xiaoyu Liu Manning Wang Zhijian Song 40 57 0 18 Aug 2022
Is Attention Interpretation? A Quantitative Assessment On Sets Jonathan Haab N. Deutschmann María Rodríguez Martínez 27 7 0 26 Jul 2022
Gigapixel Whole-Slide Images Classification using Locally Supervised Learning Jingwei Zhang Xin Zhang Ke Ma Rajarsi R. Gupta Joel H. Saltz Maria Vakalopoulou Dimitris Samaras 24 24 0 17 Jul 2022
RTN: Reinforced Transformer Network for Coronary CT Angiography Vessel-level Image Quality Assessment Yiting Lu Jun Fu Xin Li Wei Zhou Sen Liu Xinxin Zhang Congfu Jia Ying Liu Zhibo Chen ViT 23 34 0 13 Jul 2022
Trusted Multi-Scale Classification Framework for Whole Slide Image Ming Feng Kele Xu Na Wu Weiquan Huang Yan Bai Changjian Wang Huaimin Wang 45 5 0 12 Jul 2022
Multiple Instance Learning with Mixed Supervision in Gleason Grading Hao Bian Zhucheng Shao Yang Chen Yifeng Wang Haoqian Wang Jian Zhang Yongbing Zhang 27 10 0 26 Jun 2022
H&E-based Computational Biomarker Enables Universal EGFR Screening for Lung Adenocarcinoma Gabriele Campanella D. J. Ho I. Häggström Anton S. Becker Jason C. Chang Chad M. Vanderbilt Thomas J. Fuchs 13 8 0 21 Jun 2022
Incorporating intratumoral heterogeneity into weakly-supervised deep learning models via variance pooling Iain Carmichael Andrew H. Song Richard J. Chen Drew F. K. Williamson Tiffany Y. Chen Faisal Mahmood 38 12 0 17 Jun 2022
DGMIL: Distribution Guided Multiple Instance Learning for Whole Slide Image Classification Linhao Qu Xiao-Zhuo Luo Shaolei Liu Manning Wang Zhijian Song VLM 44 54 0 17 Jun 2022
DSCA: A Dual-Stream Network with Cross-Attention on Whole-Slide Image Pyramids for Cancer Prognosis Pei Liu Bo Fu Feng Ye Rui Yang Bin Xu Luping Ji 21 24 0 12 Jun 2022
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining Tianyuan Yao Yuzhe Lu Jun Long Aadarsh Jha Zheyu Zhu Zuhayr Asad Haichun Yang Agnes B. Fogo Yuankai Huo 33 10 0 31 May 2022
A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations Bangwei Guo Xingyu Li Miao Yang Hong Zhang Xuesong Xu MedIm 13 8 0 31 May 2022
Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides A. Quiros N. Coudray A. Yeaton Xinyu Yang Bojing Liu ... H. Pass A. Moreira J. L. Quesne A. Tsirigos Ke-Fei Yuan SSL 21 5 0 04 May 2022
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images Kevin Thandiackal Boqi Chen Pushpak Pati Guillaume Jaume Drew F. K. Williamson M. Gabrani O. Goksel 22 43 0 26 Apr 2022
Contrastive learning-based computational histopathology predict differential expression of cancer driver genes Haojue Huang G. Zhou Xuejun Liu L. Deng Chengju Wu Dachuan Zhang Hui Liu MedIm 41 14 0 25 Apr 2022
Vision Transformers in Medical Computer Vision -- A Contemplative Retrospection Arshi Parvaiz Muhammad Anwaar Khalid Rukhsana Zafar Huma Ameer M. Ali M. Fraz MedIm 25 59 0 29 Mar 2022
Deep Interactive Learning-based ovarian cancer segmentation of H&E-stained whole slide images to study morphological patterns of BRCA mutation D. J. Ho M. Chui Chad M. Vanderbilt J. Jung M. Robson Chan-Sik Park Jin Roh Thomas J. Fuchs 39 22 0 28 Mar 2022
DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classification Hongrun Zhang Y. Meng Yitian Zhao Yihong Qiao Xiaoyun Yang Sarah E Coupland Yalin Zheng 39 277 0 22 Mar 2022
Deep Multimodal Guidance for Medical Image Classification Mayur Mallya Ghassan Hamarneh 32 14 0 10 Mar 2022
Comparing representations of biological data learned with different AI paradigms, augmenting and cropping strategies A. Dmitrenko M. M. Masiero N. Zamboni SSL 26 2 0 07 Mar 2022
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology Richard J. Chen Rahul G. Krishnan MedIm ViT 35 84 0 01 Mar 2022
Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups Lucy Godson Navid Alemi Koohbanani J. Nsengimana G. Cook Emily L. Clarke Darren Treanor D. Bishop J. Newton-Bishop A. Gooya 24 1 0 23 Feb 2022
ScoreNet: Learning Non-Uniform Attention and Augmentation for Transformer-Based Histopathological Image Classification Thomas Stegmüller Behzad Bozorgtabar A. Spahr Jean-Philippe Thiran ViT MedIm 35 42 0 15 Feb 2022
Deep Learning for Computational Cytology: A Survey Hao Jiang Yanning Zhou Yi-Mou Lin R. Chan Jiangshu Liu Hao Chen 29 75 0 10 Feb 2022
Oral cancer detection and interpretation: Deep multiple instance learning versus conventional deep single instance learning N. Koriakina Natavsa Sladoje Vladimir Bavsić Joakim Lindblad 14 4 0 03 Feb 2022
Hybrid guiding: A multi-resolution refinement approach for semantic segmentation of gigapixel histopathological images André Pedersen Erik Smistad T. V. Rise V. G. Dale H. S. Pettersen T. Nordmo D. Bouget Ingerid Reinertsen Marit Valla 27 3 0 07 Dec 2021
Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging Andriy Myronenko Ziyue Xu Dong Yang H. Roth Daguang Xu 19 49 0 01 Nov 2021
SlideGraph+: Whole Slide Image Level Graphs to Predict HER2Status in Breast Cancer Wenqi Lu M. Toss E. Rakha Nasir M. Rajpoot F. Minhas 30 102 0 12 Oct 2021
Automatic Estimation of Ulcerative Colitis Severity from Endoscopy Videos using Ordinal Multi-Instance Learning Evan Schwab G. O. Cula K. Standish Stephen S. F. Yip A. Stojmirović Louis R. Ghanem C. Chehoud 27 13 0 29 Sep 2021
Label Cleaning Multiple Instance Learning: Refining Coarse Annotations on Single Whole-Slide Images Zhenzhen Wang Carla Saoud A. Popel Aaron W. James Aleksander S. Popel Jeremias Sulam 23 21 0 22 Sep 2021
A Pathology Deep Learning System Capable of Triage of Melanoma Specimens Utilizing Dermatopathologist Consensus as Ground Truth Sivaramakrishnan Sankarapandian S. Kohn Vaughn Spurrier S. Grullon R. Soans ... K. Motaparthi Jason B. Lee W. Shon Michael J. Bonham Julianna D. Ianni LM&MA MedIm 25 14 0 15 Sep 2021
Multi-Scale Input Strategies for Medulloblastoma Tumor Classification using Deep Transfer Learning M. Bengs S. Pant M. Bockmayr U. Schüller Alexander Schlaefer 40 4 0 14 Sep 2021
A QuadTree Image Representation for Computational Pathology R. Jewsbury A. Bhalerao Nasir M. Rajpoot 33 9 0 24 Aug 2021
Self-Rule to Multi-Adapt: Generalized Multi-source Feature Learning Using Unsupervised Domain Adaptation for Colorectal Cancer Tissue Detection C. Abbet Linda Studer Andreas Fischer H. Dawson I. Zlobec Behzad Bozorgtabar Jean-Philippe Thiran OOD 45 32 0 20 Aug 2021
Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks Richard J. Chen Ming Y. Lu Muhammad Shaban Chengkuan Chen Tiffany Y. Chen Drew F. K. Williamson Faisal Mahmood 3DPC MedIm 57 153 0 27 Jul 2021