Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images

20 April 2020

Ming Y. Lu

Drew F. K. Williamson

Papers citing "Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images"

50 / 168 papers shown

Title
PathM3: A Multimodal Multi-Task Multiple Instance Learning Framework for Whole Slide Image Classification and Captioning Qifeng Zhou Wenliang Zhong Yuzhi Guo Michael Xiao Hehuan Ma Junzhou Huang 54 10 0 13 Mar 2024
Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis Jiawen Li Yuxuan Chen Hongbo Chu Qiehe Sun Tian Guan Anjia Han Yonghong He 42 28 0 12 Mar 2024
Fine-tuning a Multiple Instance Learning Feature Extractor with Masked Context Modelling and Knowledge Distillation Juan Pisula Katarzyna Bozek 43 2 0 08 Mar 2024
MamMIL: Multiple Instance Learning for Whole Slide Images with State Space Models Zijie Fang Yifeng Wang Zhi Wang Jian Zhang Xiangyang Ji Yongbing Zhang Mamba 47 6 0 08 Mar 2024
Generalizable Whole Slide Image Classification with Fine-Grained Visual-Semantic Interaction Hao Li Ying Chen Yifei Chen Wenxian Yang Bowen Ding Yuchen Han Liansheng Wang Rongshan Yu 41 15 0 29 Feb 2024
Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology Wenhao Tang Fengtao Zhou Shengyue Huang Xiang Zhu Yi Zhang Bo Liu 47 21 0 27 Feb 2024
Multiple Instance Learning for Glioma Diagnosis using Hematoxylin and Eosin Whole Slide Images: An Indian Cohort Study Ekansh Chauhan Amit Sharma M. Uppin C. V. Jawahar P. K. Vinod 32 0 0 24 Feb 2024
A self-supervised framework for learning whole slide representations X. Hou Cheng Jiang A. Kondepudi Yiwei Lyu Asadur Chowdury Honglak Lee Todd C. Hollon MedIm 38 5 0 09 Feb 2024
GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation Ali Khajegili Mirabadi Graham Archibald Amirali Darbandsari A. Contreras-Sanz Ramin Nakhli ... C. Gilks Peter C Black Gang Wang H. Farahani A. Bashashati 34 5 0 06 Feb 2024
Deep spatial context: when attention-based models meet spatial regression Paulina Tomaszewska El.zbieta Sienkiewicz Mai P. Hoang Przemysław Biecek 34 1 0 18 Jan 2024
$$M^{2}$Fusion: Bayesian-based Multimodal Multi-level Fusion on Colorectal Cancer Microsatellite Instability Prediction$ $M^{2}$ Fusion: Bayesian-based Multimodal Multi-level Fusion on Colorectal Cancer Microsatellite Instability Prediction Quan Liu Jiawen Yao Lisha Yao Xin Chen Jingren Zhou Le Lu Ling Zhang Zai-De Liu Yuankai Huo 25 1 0 15 Jan 2024
From Whole-slide Image to Biomarker Prediction: A Protocol for End-to-End Deep Learning in Computational Pathology Omar S. M. El Nahhas M. Treeck Georg Wolflein Michaela Unger M. Ligero ... K. J. Hewitt Firas Khader S. Foersch Daniel Truhn Jakob Nikolas Kather 24 6 0 18 Dec 2023
Artificial Intelligence for Digital and Computational Pathology Andrew H. Song Guillaume Jaume Drew F. K. Williamson Ming Y. Lu Anurag J. Vaidya Tiffany R. Miller Faisal Mahmood AI4CE 30 130 0 13 Dec 2023
Seeing the random forest through the decision trees. Supporting learning health systems from histopathology with machine learning models: Challenges and opportunities Ricardo Gonzalez Ashirbani Saha Clinton J.V. Campbell Peyman Nejat Cynthia Lokker Andrew P. Norgan 51 13 0 06 Dec 2023
Long-MIL: Scaling Long Contextual Multiple Instance Learning for Histopathology Whole Slide Image Analysis Honglin Li Yunlong Zhang Chenglu Zhu Jiatong Cai Sunyi Zheng Lin Yang VLM 48 4 0 21 Nov 2023
Rotation-Agnostic Image Representation Learning for Digital Pathology Saghir Alfasly A. Shafique Peyman Nejat Jibran A. Khan Areej Alsaafin Ghazal Alabtah H. R. Tizhoosh MedIm 39 6 0 14 Nov 2023
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification Yunlong Zhang Honglin Li Yuxuan Sun Sunyi Zheng Chenglu Zhu Lin Yang 35 29 0 13 Nov 2023
Automatic Report Generation for Histopathology images using pre-trained Vision Transformers S. Sengupta Donald E. Brown VLM MedIm ViT 26 9 0 10 Nov 2023
Deep Learning Predicts Biomarker Status and Discovers Related Histomorphology Characteristics for Low-Grade Glioma Zijie Fang Yihang Liu Yifeng Wang Xiangyang Zhang Yang Chen ... Zhi Wang Shan Zeng Hong Shen Jun Tan Yongbing Zhang 22 2 0 11 Oct 2023
Classifying Whole Slide Images: What Matters? Long Nguyen Aiden Nibali Joshua Millward Zhen He 32 0 0 05 Oct 2023
RoFormer for Position Aware Multiple Instance Learning in Whole Slide Image Classification Etienne Pochet Rami Maroun Roger Trullo MedIm 25 2 0 03 Oct 2023
Forensic Histopathological Recognition via a Context-Aware MIL Network Powered by Self-Supervised Contrastive Learning Chen Shen Jun Zhang Xinggong Liang Zeyi Hao Ke Li Fan Wang Zhenyuan Wang C. Lian 22 2 0 27 Aug 2023
A vision transformer-based framework for knowledge transfer from multi-modal to mono-modal lymphoma subtyping models Bilel Guetarni Féryal Windal H. Benhabiles Marianne Petit Romain Dubois Emmanuelle Leteurtre Dominique Collard DiffM 25 2 0 02 Aug 2023
Multiple Instance Learning Framework with Masked Hard Instance Mining for Whole Slide Image Classification Wenhao Tang Sheng Huang Xiaoxian Zhang Fengtao Zhou Yi Zhang Bo Liu 34 40 0 28 Jul 2023
Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples Andrew H. Song Mane Williams Drew F. K. Williamson Guillaume Jaume Andrew Zhang ... R. Serafin Jonathan T. C. Liu Alexander S. Baras Anil V. Parwani Faisal Mahmood 17 4 0 27 Jul 2023
Towards a Visual-Language Foundation Model for Computational Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Ivy Liang ... Andrew Zhang L. Le Georg Gerber Anil V. Parwani Faisal Mahmood VLM MedIm 42 46 0 24 Jul 2023
The Whole Pathological Slide Classification via Weakly Supervised Learning Qiehe Sun Jiawen Li Jin Xu Junru Cheng Tian Guan Yonghong He 37 0 0 12 Jul 2023
Multi-Scale Prototypical Transformer for Whole Slide Image Classification Saisai Ding Jun Wang Juncheng Li Jun Shi MedIm 29 17 0 05 Jul 2023
Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need Linhao Qu Yingfan Ma Xiao-Zhuo Luo Manning Wang Zhijian Song VLM 39 20 0 05 Jul 2023
ProMIL: Probabilistic Multiple Instance Learning for Medical Imaging Lukasz Struski Dawid Rymarczyk Arkadiusz Lewicki R. Sabiniewicz Jacek Tabor Bartosz Zieliñski 34 5 0 18 Jun 2023
The Rise of AI Language Pathologists: Exploring Two-level Prompt Learning for Few-shot Weakly-supervised Whole Slide Image Classification Linhao Qu X. Luo Kexue Fu Manning Wang Zhijian Song 46 22 0 29 May 2023
DPSeq: A Novel and Efficient Digital Pathology Classifier for Predicting Cancer Biomarkers using Sequencer Architecture M. Cen Xingyu Li Bangwei Guo J. Jonnagaddala Hong Zhang Xuesong Xu MedIm 29 0 0 03 May 2023
TPMIL: Trainable Prototype Enhanced Multiple Instance Learning for Whole Slide Image Classification Litao Yang Deval Mehta Sidong Liu Dwarikanath Mahapatra A. Di Ieva Zongyuan Ge 42 5 0 01 May 2023
Masked Pre-Training of Transformers for Histology Image Analysis Shuai Jiang Liesbeth Hondelink A. Suriawinata Saeed Hassanpour MedIm 31 15 0 14 Apr 2023
ProtoDiv: Prototype-guided Division of Consistent Pseudo-bags for Whole-slide Image Classification Rui Yang Pei Liu Luping Ji VLM DiffM 31 9 0 13 Apr 2023
Regression-based Deep-Learning predicts molecular biomarkers from pathology slides Omar S. M. El Nahhas C. Loeffler Zunamys I Carrero M. Treeck Fiona Kolbinger ... Michael Hoffmeister Hermann Brenner A. Brobeil J. Reis-Filho Jakob Nikolas Kather 32 46 0 11 Apr 2023
Exploring Visual Prompts for Whole Slide Image Classification with Multiple Instance Learning Yi-Mou Lin Zhongchen Zhao Zhengjie Zhu Lisheng Wang Kwang-Ting Cheng Hao Chen VLM 35 1 0 23 Mar 2023
Interpretable histopathology-based prediction of disease relevant features in Inflammatory Bowel Disease biopsies using weakly-supervised deep learning R. Mokhtari A. Hamidinekoo D. Sutton A. Lewis B. Angermann ... E. Khan D. Marks N. Khachapuridze Talha Qaiser Nikolay Burlutskiy 29 5 0 20 Mar 2023
GNNFormer: A Graph-based Framework for Cytopathology Report Generation Yangqiaoyu Zhou Kai-Lang Yao Wusuo Li MedIm 19 1 0 17 Mar 2023
Task-specific Fine-tuning via Variational Information Bottleneck for Weakly-supervised Pathology Whole Slide Image Classification Honglin Li Chenglu Zhu Yunlong Zhang Yuxuan Sun Zhongyi Shui Wenwei Kuang S. Zheng Ling Yang 74 57 0 15 Mar 2023
Hierarchical discriminative learning improves visual representations of biomedical microscopy Cheng Jiang X. Hou A. Kondepudi Asadur Chowdury C. Freudiger D. Orringer Honglak Lee Todd C. Hollon 37 12 0 02 Mar 2023
MesoGraph: Automatic Profiling of Malignant Mesothelioma Subtypes from Histological Images Mark Eastwood H. Sailem Silviu Tudor Marc Xiaohong Gao J. Offman ... W. Cookson M. Moffatt S. Popat F. Minhas J. Robertus 33 1 0 23 Feb 2023
Domain-Specific Pre-training Improves Confidence in Whole Slide Image Classification S. Chitnis Sidong Liu T. Dash T. Verlekar A. Di Ieva S. Berkovsky L. Vig A. Srinivasan 24 4 0 20 Feb 2023
From slides (through tiles) to pixels: an explainability framework for weakly supervised models in pre-clinical pathology Marco Bertolini Van-Khoa Le Jake Pencharz A. Poehlmann Djork-Arné Clevert Santiago D. Villalba F. Montanari 38 0 0 03 Feb 2023
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains Kevin Thandiackal Luigi Piccinelli Pushpak Pati O. Goksel CLL OOD MedIm 34 7 0 02 Feb 2023
Consistency Regularisation in Varying Contexts and Feature Perturbations for Semi-Supervised Semantic Segmentation of Histology Images R. M. S. Bashir Talha Qaiser S. Raza Nasir M. Rajpoot 38 13 0 30 Jan 2023
Attention2Minority: A salient instance inference-based multiple instance learning for classifying small lesions in whole slide images Ziyu Su Mostafa Rezapour Usama Sajjad M. Gürcan M. Niazi 32 11 0 18 Jan 2023
Advances in Medical Image Analysis with Vision Transformers: A Comprehensive Review Reza Azad A. Kazerouni Moein Heidari Ehsan Khodapanah Aghdam Amir Molaei Yiwei Jia Abin Jose Rijo Roy Dorit Merhof MedIm ViT 43 162 0 09 Jan 2023
Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer Pushpak Pati Guillaume Jaume Zeineb Ayadi Kevin Thandiackal Behzad Bozorgtabar M. Gabrani O. Goksel 20 17 0 07 Jan 2023
Deep Biological Pathway Informed Pathology-Genomic Multimodal Survival Prediction Lin Qiu Aminollah Khormali Kai Liu 23 9 0 06 Jan 2023