Publicly Available Clinical BERT Embeddings

6 April 2019

Matthew B. A. McDermott

AI4MH

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Papers citing "Publicly Available Clinical BERT Embeddings"

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Title
Lawformer: A Pre-trained Language Model for Chinese Legal Long Documents Chaojun Xiao Xueyu Hu Zhiyuan Liu Cunchao Tu Maosong Sun AILaw ELM 48 229 0 09 May 2021
Introducing Information Retrieval for Biomedical Informatics Students Sanya Bathla Taneja Richard D. Boyce William T. Reynolds Denis R. Newman-Griffis 16 0 0 06 May 2021
Leveraging Deep Representations of Radiology Reports in Survival Analysis for Predicting Heart Failure Patient Mortality Hyungchul Lee E. Sholle Ashley N. Beecy S. Al’Aref Yifan Peng 23 7 0 03 May 2021
Extracting Adverse Drug Events from Clinical Notes D. Mahendran Bridget T. McInnes 27 25 0 21 Apr 2021
Improving Biomedical Pretrained Language Models with Knowledge Zheng Yuan Yijia Liu Chuanqi Tan Songfang Huang Fei Huang 6 91 0 21 Apr 2021
Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes Bhavani Singh Agnikula Kshatriya N. Nuñez Manuel Gardea-Reséndez Euijung Ryu B. Coombes S. Fu M. Frye Joanna M. Biernacka Yanshan Wang 11 6 0 19 Apr 2021
Three-level Hierarchical Transformer Networks for Long-sequence and Multiple Clinical Documents Classification Yuqi Si Kirk Roberts 19 9 0 17 Apr 2021
Membership Inference Attack Susceptibility of Clinical Language Models Abhyuday N. Jagannatha Bhanu Pratap Singh Rawat Hong-ye Yu MIACV 29 61 0 16 Apr 2021
AMMU : A Survey of Transformer-based Biomedical Pretrained Language Models Katikapalli Subramanyam Kalyan A. Rajasekharan S. Sangeetha LM&MA MedIm 26 164 0 16 Apr 2021
Temporal Adaptation of BERT and Performance on Downstream Document Classification: Insights from Social Media Paul Röttger J. Pierrehumbert 20 64 0 16 Apr 2021
Does BERT Pretrained on Clinical Notes Reveal Sensitive Data? Eric P. Lehman Sarthak Jain Karl Pichotta Yoav Goldberg Byron C. Wallace OOD MIACV 24 118 0 15 Apr 2021
Towards BERT-based Automatic ICD Coding: Limitations and Opportunities Damian Pascual Sandro Luck Roger Wattenhofer MedIm 16 53 0 14 Apr 2021
On the Impact of Random Seeds on the Fairness of Clinical Classifiers Silvio Amir Jan-Willem van de Meent Byron C. Wallace 19 14 0 13 Apr 2021
Semantic maps and metrics for science Semantic maps and metrics for science using deep transformer encoders Brendan Chambers James A. Evans MedIm 13 0 0 13 Apr 2021
Multitask Recalibrated Aggregation Network for Medical Code Prediction Wei Sun Shaoxiong Ji Min Zhang Pekka Marttinen 6 8 0 02 Apr 2021
Retraining DistilBERT for a Voice Shopping Assistant by Using Universal Dependencies P. Jayarao Arpit Sharma 21 2 0 29 Mar 2021
TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding Biplob Biswas Thai-Hoang Pham Ping Zhang 21 29 0 28 Mar 2021
Benchmarking Modern Named Entity Recognition Techniques for Free-text Health Record De-identification A. Ahmed A. Abbasi Carsten Eickhoff BDL 6 9 0 25 Mar 2021
BERTSurv: BERT-Based Survival Models for Predicting Outcomes of Trauma Patients Yun Zhao Qinghang Hong Xinlu Zhang Yu Deng Yuqing Wang Linda R. Petzold 11 17 0 19 Mar 2021
COVID-19 Smart Chatbot Prototype for Patient Monitoring Hannah Lei Weiqi Lu A. Ji Emmett Bertram Paul Gao Xiaoqian Jiang Arko Barman 22 4 0 11 Mar 2021
Does the Magic of BERT Apply to Medical Code Assignment? A Quantitative Study Shaoxiong Ji M. Holtta Pekka Marttinen 27 72 0 11 Mar 2021
Identifying ARDS using the Hierarchical Attention Network with Sentence Objectives Framework K. Lybarger L. Mabrey M. Thau P. Bhatraju M. Wurfel Meliha Yetisgen-Yildiz 8 2 0 10 Mar 2021
Interpretable bias mitigation for textual data: Reducing gender bias in patient notes while maintaining classification performance J. Minot N. Cheney Marc E. Maier Danne C. Elbers C. Danforth P. Dodds FaML 28 3 0 10 Mar 2021
Multimodal Representation Learning via Maximization of Local Mutual Information Ruizhi Liao Daniel Moyer Miriam Cha Keegan Quigley Seth Berkowitz Steven Horng Polina Golland W. Wells SSL 21 41 0 08 Mar 2021
Automated Quality Assessment of Cognitive Behavioral Therapy Sessions Through Highly Contextualized Language Representations Nikolaos Flemotomos Víctor R. Martínez Zhuohao Chen Torrey A. Creed David C. Atkins Shrikanth Narayanan 9 30 0 23 Feb 2021
Biomedical Question Answering: A Survey of Approaches and Challenges Qiao Jin Zheng Yuan Guangzhi Xiong Qian Yu Huaiyuan Ying Chuanqi Tan Mosha Chen Songfang Huang Xiaozhong Liu Sheng Yu 29 95 0 10 Feb 2021
HINT: Hierarchical Interaction Network for Trial Outcome Prediction Leveraging Web Data Tianfan Fu Kexin Huang Cao Xiao Lucas Glass Jimeng Sun 41 59 0 08 Feb 2021
Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration Betty van Aken Jens-Michalis Papaioannou M. Mayrdorfer Klemens Budde Felix Alexander Gers Alexander Loser 24 67 0 08 Feb 2021
A Hybrid Approach to Measure Semantic Relatedness in Biomedical Concepts Katikapalli Subramanyam Kalyan S. Sangeetha 27 9 0 25 Jan 2021
KART: Parameterization of Privacy Leakage Scenarios from Pre-trained Language Models Yuta Nakamura S. Hanaoka Y. Nomura Naoto Hayashi O. Abe Shuntaro Yada Shoko Wakamiya Nara Institute of Science MIACV 27 8 0 31 Dec 2020
Discovering key topics from short, real-world medical inquiries via natural language processing and unsupervised learning Angelo Ziletti Christoph Berns Oliver Treichel Thomas Weber Jennifer J. Liang ... Marion Schwaerzler J. Virayah D. Ruau Xin Ma Andreas Mattern 11 0 0 08 Dec 2020
COVIDScholar: An automated COVID-19 research aggregation and analysis platform Amalie Trewartha John Dagdelen Haoyan Huo Kevin Cruse Zheren Wang ... Akshay Subramanian Yuxing Fei Benjamin Justus Kristin A. Persson Gerbrand Ceder 27 20 0 07 Dec 2020
GottBERT: a pure German Language Model Raphael Scheible Fabian Thomczyk P. Tippmann V. Jaravine M. Boeker VLM 22 76 0 03 Dec 2020
End-to-End QA on COVID-19: Domain Adaptation with Synthetic Training R. Reddy Bhavani Iyer Md Arafat Sultan Rong Zhang Avirup Sil Vittorio Castelli Radu Florian Salim Roukos OOD 20 19 0 02 Dec 2020
Extracting COVID-19 Diagnoses and Symptoms From Clinical Text: A New Annotated Corpus and Neural Event Extraction Framework K. Lybarger Mari Ostendorf M. Thompson Meliha Yetisgen 14 45 0 02 Dec 2020
Transformer Query-Target Knowledge Discovery (TEND): Drug Discovery from CORD-19 Leo K. Tam Xiaosong Wang Daguang Xu MedIm 23 2 0 28 Nov 2020
Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health Denis R. Newman-Griffis Eric Fosler-Lussier 24 18 0 27 Nov 2020
Improving Clinical Outcome Predictions Using Convolution over Medical Entities with Multimodal Learning Batuhan Bardak Mehmet Tan 23 35 0 24 Nov 2020
Biomedical Named Entity Recognition at Scale Veysel Kocaman D. Talby 25 67 0 12 Nov 2020
Low-Resource Adaptation of Neural NLP Models Farhad Nooralahzadeh 25 0 0 09 Nov 2020
Towards Automated Anamnesis Summarization: BERT-based Models for Symptom Extraction A. Schäfer Nils Blach Oliver Rausch M. Warm Nils Krüger 11 6 0 03 Nov 2020
Improving Dialogue Breakdown Detection with Semi-Supervised Learning Nathan Ng Marzyeh Ghassemi Narendran Thangarajan Jiacheng Pan Qi Guo 10 8 0 30 Oct 2020
CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering Xiang Yue Xinliang Frederick Zhang Ziyu Yao Simon M. Lin Huan Sun LM&MA MedIm 21 35 0 30 Oct 2020
Multiple Sclerosis Severity Classification From Clinical Text Alister D Costa Stefan Denkovski Michal Malyska S. Moon Brandon Rufino Zhen Yang Taylor W. Killian Marzyeh Ghassemi 24 12 0 29 Oct 2020
A Survey on Recent Approaches for Natural Language Processing in Low-Resource Scenarios Michael A. Hedderich Lukas Lange Heike Adel Jannik Strötgen Dietrich Klakow 216 287 0 23 Oct 2020
FAME: Feature-Based Adversarial Meta-Embeddings for Robust Input Representations Lukas Lange Heike Adel Jannik Strötgen Dietrich Klakow 11 7 0 23 Oct 2020
Improving BERT Performance for Aspect-Based Sentiment Analysis Akbar Karimi L. Rossi Andrea Prati 35 48 0 22 Oct 2020
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus George Michalopoulos Yuanxin Wang H. Kaka Helen H. Chen Alexander Wong 28 122 0 20 Oct 2020
SmartTriage: A system for personalized patient data capture, documentation generation, and decision support Ilya Valmianski Nave Frost Navdeep Sood Yang Wang Baodong Liu James J. Zhu Sunil Karumuri Ian M. Finn D. Zisook 16 7 0 19 Oct 2020
Drug Repurposing for COVID-19 via Knowledge Graph Completion Rui Zhang D. Hristovski Dalton Schutte Andrej Kastrin M. Fiszman H. Kilicoglu 23 3 0 19 Oct 2020