BioSentVec: creating sentence embeddings for biomedical texts

22 October 2018

Papers citing "BioSentVec: creating sentence embeddings for biomedical texts"

50 / 67 papers shown

Title
FinMTEB: Finance Massive Text Embedding Benchmark Yixuan Tang Yi Yang AIFin 66 0 0 16 Feb 2025
BioBridge: Unified Bio-Embedding with Bridging Modality in Code-Switched EMR Jangyeong Jeon Sangyeon Cho Dongjoon Lee Changhee Lee Junyeong Kim 75 0 0 16 Dec 2024
SciGisPy: a Novel Metric for Biomedical Text Simplification via Gist Inference Score Chen Lyu Gabriele Pergola 36 1 0 12 Oct 2024
Do We Need Domain-Specific Embedding Models? An Empirical Investigation Yixuan Tang Yi Yang AIFin 50 3 0 27 Sep 2024
A Survey of Deep Learning-based Radiology Report Generation Using Multimodal Data Xinyi Wang Grazziela Figueredo Ruizhe Li W. Zhang Weitong Chen Xin Chen MedIm ViT 49 2 0 21 May 2024
Health Text Simplification: An Annotated Corpus for Digestive Cancer Education and Novel Strategies for Reinforcement Learning Md Mushfiqur Rahman Mohammad Sabik Irbaz Kai North Michelle S. Williams Marcos Zampieri Kevin Lybarger 35 0 0 26 Jan 2024
An Information Retrieval and Extraction Tool for Covid-19 Related Papers Marcos V. L. Pivetta 18 0 0 20 Jan 2024
Tracing the Genealogies of Ideas with Large Language Model Embeddings Lucian Li AI4CE 16 0 0 13 Jan 2024
WellFactor: Patient Profiling using Integrative Embedding of Healthcare Data Dongjin Choi Andy Xiang Ozgur Ozturk Deep Shrestha Barry L. Drake Hamid Haidarian Faizan Javed Haesun Park 22 2 0 21 Dec 2023
Benchmarking and Analyzing In-context Learning, Fine-tuning and Supervised Learning for Biomedical Knowledge Curation: a focused study on chemical entities of biological interest Emily Groves Minhong Wang Yusuf Abdulle Holger Kunz J. Hoelscher-Obermaier Ronin Wu Honghan Wu 29 2 0 20 Dec 2023
Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation Rui Yang Qingcheng Zeng Keen You Yujie Qiao Lucas Huang ... Dragomir R. Radev Zhiyong Lu Hua Xu Qingyu Chen Irene Z Li ELM LM&MA 31 3 0 28 Nov 2023
Screening of Pneumonia and Urinary Tract Infection at Triage using TriNet Stephen Z. Lu 18 0 0 05 Sep 2023
Patient Clustering via Integrated Profiling of Clinical and Digital Data Dongjin Choi Andy Xiang Ozgur Ozturk Deep Shrestha Barry L. Drake Hamid Haidarian F. Javed Haesun Park 22 1 0 22 Aug 2023
MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval Qiao Jin Won Kim Qingyu Chen Donald C. Comeau Lana Yeganova John Wilbur Zhiyong Lu LM&MA MedIm 17 100 0 02 Jul 2023
Scientific Fact-Checking: A Survey of Resources and Approaches Juraj Vladika Florian Matthes HILM 40 42 0 26 May 2023
Zero-Shot Multi-Label Topic Inference with Sentence Encoders Souvik Sarkar Dongji Feng Shubhra (Santu) Karmaker BDL 19 6 0 14 Apr 2023
Bioformer: an efficient transformer language model for biomedical text mining Li Fang Qingyu Chen Chih-Hsuan Wei Zhiyong Lu Kai Wang MedIm AI4CE 32 18 0 03 Feb 2023
The effects of gender bias in word embeddings on depression prediction Gizem Sogancioglu Heysem Kaya 26 3 0 15 Dec 2022
MED-SE: Medical Entity Definition-based Sentence Embedding Hyeonbin Hwang Haanju Yoo Yera Choi MedIm 46 0 0 09 Dec 2022
Automated Identification of Eviction Status from Electronic Health Record Notes Zonghai Yao J. Tsai Weisong Liu David Levy Emily Druhl J. Reisman Hongfeng Yu 27 10 0 06 Dec 2022
An Automatic SOAP Classification System Using Weakly Supervision And Transfer Learning Sunjae Kwon Zhichao Yang Hong-ye Yu 26 2 0 26 Nov 2022
Hardness-guided domain adaptation to recognise biomedical named entities under low-resource scenarios Ngoc Dang Nguyen Lan Du Wray L. Buntine Changyou Chen Richard Beare 28 7 0 11 Nov 2022
Using Bottleneck Adapters to Identify Cancer in Clinical Notes under Low-Resource Constraints Omid Rohanian Hannah Jauncey Mohammadmahdi Nouriborji Vinod Kumar Chauhan Bronner P. Gonccalves Christiana Kartsonaki Isaric Clinical Characterisation Group L. Merson David A. Clifton 19 7 0 17 Oct 2022
Detailed Annotations of Chest X-Rays via CT Projection for Report Understanding C. Seibold Simon Reiß Saquib Sarfraz M. Fink Victoria L. Mayer Jan Sellner Moon S. Kim Klaus H. Maier-Hein Jens Kleesiek Rainer Stiefelhagen 37 18 0 07 Oct 2022
Gender bias in (non)-contextual clinical word embeddings for stereotypical medical categories Gizem Sogancioglu Fabian Mijsters Amar van Uden Jelle Peperzak 27 3 0 02 Aug 2022
A reproducible experimental survey on biomedical sentence similarity: a string-based method sets the state of the art Alicia Lara-Clares Juan J. Lastra-Díaz A. García-Serrano 19 0 0 18 May 2022
Learning to Revise References for Faithful Summarization Griffin Adams Han-Chin Shing Q. Sun C. Winestock Kathleen McKeown Noémie Elhadad 19 32 0 13 Apr 2022
Filter Drug-induced Liver Injury Literature with Natural Language Processing and Ensemble Learning Xianghao Zhan Fanjin Wang Olivier Gevaert 16 12 0 09 Mar 2022
How Can Graph Neural Networks Help Document Retrieval: A Case Study on CORD19 with Concept Map Generation Hejie Cui Jiaying Lu Yao Ge Carl Yang 42 22 0 12 Jan 2022
Pre-trained Language Models in Biomedical Domain: A Systematic Survey Benyou Wang Qianqian Xie Jiahuan Pei Zhihong Chen Prayag Tiwari Zhao Li Jie Fu LM&MA AI4CE 37 163 0 11 Oct 2021
Automated Fact-Checking: A Survey Xia Zeng Amani S. Abumansour A. Zubiaga HILM 183 95 0 23 Sep 2021
Scope resolution of predicted negation cues: A two-step neural network-based approach D. D. Jong 16 0 0 15 Sep 2021
Abstract, Rationale, Stance: A Joint Model for Scientific Claim Verification Zhiwei Zhang Jiyi Li Fumiyo Fukumoto Yanming Ye 11 26 0 13 Sep 2021
Overview and Insights from the SciVer Shared Task on Scientific Claim Verification David Wadden Kyle Lo 55 11 0 17 Jul 2021
Trust It or Not: Confidence-Guided Automatic Radiology Report Generation Yixin Wang Zihao Lin Zhe Xu Haoyu Dong Jiang Tian Jie Luo Zhongchao Shi Yang Zhang Jianping Fan Zhiqiang He UQCV MedIm 36 12 0 21 Jun 2021
CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes J. Mullenbach Yada Pruksachatkun Sean Adler Jennifer Seale Jordan Swartz T. McKelvey Hui Dai Yi Yang David Sontag 30 15 0 04 Jun 2021
QMUL-SDS at SCIVER: Step-by-Step Binary Classification for Scientific Claim Verification Xia Zeng A. Zubiaga 13 9 0 23 Apr 2021
Extracting Adverse Drug Events from Clinical Notes D. Mahendran Bridget T. McInnes 27 25 0 21 Apr 2021
Semantic maps and metrics for science Semantic maps and metrics for science using deep transformer encoders Brendan Chambers James A. Evans MedIm 13 0 0 13 Apr 2021
EFloat: Entropy-coded Floating Point Format for Compressing Vector Embedding Models R. Bordawekar B. Abali Ming-Hung Chen MQ 14 3 0 04 Feb 2021
A Paragraph-level Multi-task Learning Model for Scientific Fact-Verification Xiangci Li Gully A. Burns Nanyun Peng MU 12 35 0 28 Dec 2020
Ensemble model for pre-discharge icd10 coding prediction Yassien Shaalan Alexander Dokumentov Piyapong Khumrin K. Khwanngern Anawat Wisetborisu ... Nattapat Karaket Witthawin Achariyaviriya S. Auephanwiriyakul N. Theera-Umpon Terence Siganakis 14 2 0 16 Dec 2020
Biomedical Concept Relatedness -- A large EHR-based benchmark Claudia Schulz Josh Levy-Kramer C. V. Assel Miklos Kepes Nils Y. Hammerla 9 8 0 30 Oct 2020
TweetBERT: A Pretrained Language Representation Model for Twitter Text Analysis Mohiuddin Md Abdul Qudar Vijay K. Mago SSeg 28 35 0 17 Oct 2020
Multi-label Few/Zero-shot Learning with Knowledge Aggregated from Multiple Label Graphs Jueqing Lu Lan Du Ming Liu Joanna Dipnall 14 41 0 15 Oct 2020
Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP) Qingyu Chen Robert Leaman Alexis Allot Ling Luo Chih-Hsuan Wei Shankai Yan Zhiyong Lu 19 37 0 09 Oct 2020
Unsupervised Pre-training for Biomedical Question Answering Vaishnavi Kommaraju K. Gunasekaran Kun Li Trapit Bansal Andrew McCallum Ivana Williams Ana-Maria Istrate SSL MedIm 16 18 0 27 Sep 2020
BioALBERT: A Simple and Effective Pre-trained Language Model for Biomedical Named Entity Recognition Usman Naseem Matloob Khushi V. Reddy S. Rajendran Imran Razzak Jinman Kim 16 63 0 19 Sep 2020
HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition Leon Weber Mario Sanger Jannes Munchmeyer Maryam Habibi Ulf Leser Alan Akbik 6 94 0 17 Aug 2020
Learning Differential Diagnosis of Skin Conditions with Co-occurrence Supervision using Graph Convolutional Networks Junyan Wu Hao Jiang Xiaowei Ding A. Konda Jin Han Yang Zhang Qian Li 15 10 0 13 Jul 2020