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InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference

InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference

6 March 2025
Tianyu Cui
Song-Jun Xu
Artem Moskalev
Shuwei Li
Tommaso Mansi
Mangal Prakash
Rui Liao
    BDL
ArXivPDFHTML

Papers citing "InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference"

23 / 23 papers shown
Title
DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning
DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning
DeepSeek-AI
Daya Guo
Dejian Yang
Haowei Zhang
Junxiao Song
...
Shiyu Wang
S. Yu
Shunfeng Zhou
Shuting Pan
S.S. Li
ReLM
VLM
OffRL
AI4TS
LRM
323
1,641
0
22 Jan 2025
Exploring Large Language Models for Feature Selection: A Data-centric
  Perspective
Exploring Large Language Models for Feature Selection: A Data-centric Perspective
Dawei Li
Zhen Tan
Huan Liu
LM&MA
71
10
0
21 Aug 2024
Retrieval-Augmented Generation for Natural Language Processing: A Survey
Retrieval-Augmented Generation for Natural Language Processing: A Survey
Shangyu Wu
Ying Xiong
Yufei Cui
Haolun Wu
Can Chen
...
Lianming Huang
Xue Liu
Tei-Wei Kuo
Nan Guan
Chun Jason Xue
3DV
RALM
81
36
0
18 Jul 2024
A Fast and Scalable Pathwise-Solver for Group Lasso and Elastic Net
  Penalized Regression via Block-Coordinate Descent
A Fast and Scalable Pathwise-Solver for Group Lasso and Elastic Net Penalized Regression via Block-Coordinate Descent
James Yang
Trevor Hastie
43
3
0
14 May 2024
Large Language Models Can Automatically Engineer Features for Few-Shot
  Tabular Learning
Large Language Models Can Automatically Engineer Features for Few-Shot Tabular Learning
Sungwon Han
Jinsung Yoon
Sercan O. Arik
Tomas Pfister
LMTD
64
28
0
15 Apr 2024
ICE-SEARCH: A Language Model-Driven Feature Selection Approach
ICE-SEARCH: A Language Model-Driven Feature Selection Approach
T. Yang
Tim Tianyi Yang
Fuyuan Lyu
Shaoshan Liu
Xue
Xue Liu
80
4
0
28 Feb 2024
A Survey on Hallucination in Large Language Models: Principles,
  Taxonomy, Challenges, and Open Questions
A Survey on Hallucination in Large Language Models: Principles, Taxonomy, Challenges, and Open Questions
Lei Huang
Weijiang Yu
Weitao Ma
Weihong Zhong
Zhangyin Feng
...
Qianglong Chen
Weihua Peng
Xiaocheng Feng
Bing Qin
Ting Liu
LRM
HILM
111
855
0
09 Nov 2023
Merging Generated and Retrieved Knowledge for Open-Domain QA
Merging Generated and Retrieved Knowledge for Open-Domain QA
Yunxiang Zhang
Muhammad Khalifa
Lajanugen Logeswaran
Moontae Lee
Honglak Lee
Lu Wang
RALM
61
38
0
22 Oct 2023
LLM Lies: Hallucinations are not Bugs, but Features as Adversarial
  Examples
LLM Lies: Hallucinations are not Bugs, but Features as Adversarial Examples
Jia-Yu Yao
Kun-Peng Ning
Zhen-Hui Liu
Munan Ning
Li Yuan
HILM
LRM
AAML
59
188
0
02 Oct 2023
Language models are weak learners
Language models are weak learners
Hariharan Manikandan
Yiding Jiang
J Zico Kolter
55
16
0
25 Jun 2023
LMPriors: Pre-Trained Language Models as Task-Specific Priors
LMPriors: Pre-Trained Language Models as Task-Specific Priors
Kristy Choi
Chris Cundy
Sanjari Srivastava
Stefano Ermon
BDL
77
43
0
22 Oct 2022
Challenging BIG-Bench Tasks and Whether Chain-of-Thought Can Solve Them
Challenging BIG-Bench Tasks and Whether Chain-of-Thought Can Solve Them
Mirac Suzgun
Nathan Scales
Nathanael Scharli
Sebastian Gehrmann
Yi Tay
...
Aakanksha Chowdhery
Quoc V. Le
Ed H. Chi
Denny Zhou
Jason W. Wei
ALM
ELM
LRM
ReLM
246
1,099
0
17 Oct 2022
Improving the Domain Adaptation of Retrieval Augmented Generation (RAG)
  Models for Open Domain Question Answering
Improving the Domain Adaptation of Retrieval Augmented Generation (RAG) Models for Open Domain Question Answering
Shamane Siriwardhana
Rivindu Weerasekera
Elliott Wen
Tharindu Kaluarachchi
R. Rana
Suranga Nanayakkara
VLM
60
172
0
06 Oct 2022
Solving Quantitative Reasoning Problems with Language Models
Solving Quantitative Reasoning Problems with Language Models
Aitor Lewkowycz
Anders Andreassen
David Dohan
Ethan Dyer
Henryk Michalewski
...
Theo Gutman-Solo
Yuhuai Wu
Behnam Neyshabur
Guy Gur-Ari
Vedant Misra
ReLM
ELM
LRM
142
831
0
29 Jun 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models
Jason W. Wei
Xuezhi Wang
Dale Schuurmans
Maarten Bosma
Brian Ichter
F. Xia
Ed H. Chi
Quoc Le
Denny Zhou
LM&Ro
LRM
AI4CE
ReLM
752
9,330
0
28 Jan 2022
Pre-train, Prompt, and Predict: A Systematic Survey of Prompting Methods
  in Natural Language Processing
Pre-train, Prompt, and Predict: A Systematic Survey of Prompting Methods in Natural Language Processing
Pengfei Liu
Weizhe Yuan
Jinlan Fu
Zhengbao Jiang
Hiroaki Hayashi
Graham Neubig
VLM
SyDa
189
3,964
0
28 Jul 2021
The Pile: An 800GB Dataset of Diverse Text for Language Modeling
The Pile: An 800GB Dataset of Diverse Text for Language Modeling
Leo Gao
Stella Biderman
Sid Black
Laurence Golding
Travis Hoppe
...
Horace He
Anish Thite
Noa Nabeshima
Shawn Presser
Connor Leahy
AIMat
434
2,091
0
31 Dec 2020
Language Models are Few-Shot Learners
Language Models are Few-Shot Learners
Tom B. Brown
Benjamin Mann
Nick Ryder
Melanie Subbiah
Jared Kaplan
...
Christopher Berner
Sam McCandlish
Alec Radford
Ilya Sutskever
Dario Amodei
BDL
721
41,894
0
28 May 2020
ColBERT: Efficient and Effective Passage Search via Contextualized Late
  Interaction over BERT
ColBERT: Efficient and Effective Passage Search via Contextualized Late Interaction over BERT
Omar Khattab
Matei A. Zaharia
117
1,360
0
27 Apr 2020
Language Models as Knowledge Bases?
Language Models as Knowledge Bases?
Fabio Petroni
Tim Rocktaschel
Patrick Lewis
A. Bakhtin
Yuxiang Wu
Alexander H. Miller
Sebastian Riedel
KELM
AI4MH
561
2,664
0
03 Sep 2019
LassoNet: A Neural Network with Feature Sparsity
LassoNet: A Neural Network with Feature Sparsity
Ismael Lemhadri
Feng Ruan
L. Abraham
Robert Tibshirani
78
129
0
29 Jul 2019
Attention Is All You Need
Attention Is All You Need
Ashish Vaswani
Noam M. Shazeer
Niki Parmar
Jakob Uszkoreit
Llion Jones
Aidan Gomez
Lukasz Kaiser
Illia Polosukhin
3DV
665
131,414
0
12 Jun 2017
Efficient and robust approximate nearest neighbor search using
  Hierarchical Navigable Small World graphs
Efficient and robust approximate nearest neighbor search using Hierarchical Navigable Small World graphs
Yury Malkov
Dmitry A. Yashunin
AI4TS
141
1,454
0
30 Mar 2016
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