v1v2 (latest)

ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding

21 August 2024

Yiqiao Jin

Wei Wang

Papers citing "ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding"

32 / 32 papers shown

Title
Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering Chen Liu Mingchen Li Yang Tan Wenrui Gou Guisheng Fan Bingxin Zhou 37 0 0 14 May 2025
Enhancing Product Search Interfaces with Sketch-Guided Diffusion and Language Agents Edward Sun DiffM 66 0 0 21 Mar 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu Zhang James Zou Yizhou Sun Wei Wang LM&MA AI4CE 117 4 0 21 Feb 2025
Journey into Automation: Image-Derived Pavement Texture Extraction and Evaluation Bingjie Lu Han-Cheng Dan Yichen Zhang Zhetao Huang 105 2 0 05 Jan 2025
A Picture is Worth A Thousand Numbers: Enabling LLMs Reason about Time Series via Visualization Haoxin Liu Chenghao Liu B. Prakash AI4TS LRM 150 11 0 09 Nov 2024
OSCAR: Operating System Control via State-Aware Reasoning and Re-Planning Xiaoqiang Wang Bang Liu LLMAG LM&Ro LRM 113 12 0 24 Oct 2024
CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes Jason Yang Ariane Mora Shengchao Liu Bruce J. Wittmann A. Anandkumar Frances H. Arnold Yisong Yue 18 7 0 21 Jun 2024
AgentReview: Exploring Peer Review Dynamics with LLM Agents Yiqiao Jin Qinlin Zhao Yiyang Wang Hao Chen Kaijie Zhu Yijia Xiao Jindong Wang LLMAG 127 27 0 18 Jun 2024
ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training Le Zhuo Zewen Chi Minghao Xu Heyan Huang Heqi Zheng Conghui He Xian-Ling Mao Wentao Zhang 168 13 0 28 Feb 2024
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein Bo Chen Xingyi Cheng Pan Li Yangli-ao Geng Jing Gong ... Chiming Liu Aohan Zeng Yuxiao Dong Jie Tang Leo T. Song 71 112 0 11 Jan 2024
Video-Bench: A Comprehensive Benchmark and Toolkit for Evaluating Video-based Large Language Models Munan Ning Bin Zhu Yujia Xie Bin Lin Jiaxi Cui Lu Yuan Dongdong Chen Li-ming Yuan ELM MLLM 71 66 0 27 Nov 2023
InstructProtein: Aligning Human and Protein Language via Knowledge Instruction Zeyuan Wang Qiang Zhang Keyan Ding Ming Qin Zhuang Xiang Xiaotong Li Huajun Chen 88 32 0 05 Oct 2023
Semi-Offline Reinforcement Learning for Optimized Text Generation Changyu Chen Xiting Wang Yiqiao Jin Victor Ye Dong Li Dong Jie Cao Yi Liu Rui Yan OffRL 65 15 0 16 Jun 2023
LLaMA-Adapter: Efficient Fine-tuning of Language Models with Zero-init Attention Renrui Zhang Jiaming Han Chris Liu Peng Gao Aojun Zhou Xiangfei Hu Shilin Yan Pan Lu Hongsheng Li Yu Qiao MLLM 166 787 0 28 Mar 2023
GPT-4 Technical Report OpenAI OpenAI OpenAI Josh Achiam Steven Adler Sandhini Agarwal Lama Ahmad ... Shengjia Zhao Tianhao Zheng Juntang Zhuang William Zhuk Barret Zoph LLMAG MLLM 1.5K 14,761 0 15 Mar 2023
Benchmarking Large Language Models for News Summarization Tianyi Zhang Faisal Ladhak Esin Durmus Percy Liang Kathleen McKeown Tatsunori B. Hashimoto ELM 102 527 0 31 Jan 2023
Conditional Antibody Design as 3D Equivariant Graph Translation Xiangzhe Kong Wenbing Huang Yang Liu DiffM 78 89 0 12 Aug 2022
Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval Pascal Notin M. Dias J. Frazer Javier Marchena-Hurtado Aidan Gomez D. Marks Y. Gal 111 189 0 27 May 2022
Protein Representation Learning by Geometric Structure Pretraining Zuobai Zhang Minghao Xu Arian R. Jamasb Vijil Chenthamarakshan A. Lozano Payel Das Jian Tang SSL 74 233 0 11 Mar 2022
OntoProtein: Protein Pretraining With Gene Ontology Embedding Ningyu Zhang Zhen Bi Xiaozhuan Liang Shuyang Cheng Haosen Hong Shumin Deng J. Lian Qiang Zhang Huajun Chen 162 97 0 23 Jan 2022
CRASS: A Novel Data Set and Benchmark to Test Counterfactual Reasoning of Large Language Models Jorg Frohberg Frank Binder SLR 109 30 0 22 Dec 2021
Iterative Refinement Graph Neural Network for Antibody Sequence-Structure Co-design Wengong Jin Jeremy Wohlwend Regina Barzilay Tommi Jaakkola 54 142 0 09 Oct 2021
Modeling Protein Using Large-scale Pretrain Language Model Yijia Xiao J. Qiu Ziang Li Chang-Yu Hsieh Jie Tang 84 30 0 17 Aug 2021
Learning from Protein Structure with Geometric Vector Perceptrons Bowen Jing Stephan Eismann Patricia Suriana Raphael J. L. Townshend R. Dror GNN 3DV 77 494 0 03 Sep 2020
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Yu Gu Robert Tinn Hao Cheng Michael R. Lucas Naoto Usuyama Xiaodong Liu Tristan Naumann Jianfeng Gao Hoifung Poon LM&MA AI4CE 123 1,783 0 31 Jul 2020
BERTology Meets Biology: Interpreting Attention in Protein Language Models Jesse Vig Ali Madani Lav Varshney Caiming Xiong R. Socher Nazneen Rajani 97 294 0 26 Jun 2020
HellaSwag: Can a Machine Really Finish Your Sentence? Rowan Zellers Ari Holtzman Yonatan Bisk Ali Farhadi Yejin Choi 185 2,532 0 19 May 2019
BERTScore: Evaluating Text Generation with BERT Tianyi Zhang Varsha Kishore Felix Wu Kilian Q. Weinberger Yoav Artzi 360 5,872 0 21 Apr 2019
GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding Alex Jinpeng Wang Amanpreet Singh Julian Michael Felix Hill Omer Levy Samuel R. Bowman ELM 1.1K 7,201 0 20 Apr 2018
ROUGE 2.0: Updated and Improved Measures for Evaluation of Summarization Tasks Kavita A. Ganesan 44 149 0 05 Mar 2018
Attention Is All You Need Ashish Vaswani Noam M. Shazeer Niki Parmar Jakob Uszkoreit Llion Jones Aidan Gomez Lukasz Kaiser Illia Polosukhin 3DV 805 132,725 0 12 Jun 2017
Neural Machine Translation by Jointly Learning to Align and Translate Dzmitry Bahdanau Kyunghyun Cho Yoshua Bengio AIMat 578 27,338 0 01 Sep 2014