Empowering Biomedical Discovery with AI Agents

3 April 2024

Shanghua Gao

Ada Fang

Yepeng Huang

Valentina Giunchiglia

Ayush Noori

Jonathan Richard Schwarz

Papers citing "Empowering Biomedical Discovery with AI Agents"

50 / 53 papers shown

Title
L-MTP: Leap Multi-Token Prediction Beyond Adjacent Context for Large Language Models Xiaohao Liu Xiaobo Xia Weixiang Zhao Manyi Zhang Xianzhi Yu Xiu Su Shuo Yang See-Kiong Ng Tat-Seng Chua KELM LRM 89 0 0 23 May 2025
Towards Scientific Intelligence: A Survey of LLM-based Scientific Agents Shuo Ren Pu Jian Zhenjiang Ren Chunlin Leng Can Xie Jiajun Zhang LLMAG AI4CE 140 4 0 31 Mar 2025
MedAgentsBench: Benchmarking Thinking Models and Agent Frameworks for Complex Medical Reasoning Xiangru Tang Daniel Shao Jiwoong Sohn Jiapeng Chen Jiayi Zhang ... Yilun Zhao Chenglin Wu Wenqi Shi Arman Cohan Mark B. Gerstein AI4MH LRM ELM LM&MA 123 10 0 10 Mar 2025
Measuring temporal effects of agent knowledge by date-controlled tool use R. Xian Qiming Cui Stefan Bauer Reza Abbasi-Asl KELM 146 0 0 06 Mar 2025
RAG-Enhanced Collaborative LLM Agents for Drug Discovery Namkyeong Lee Edward De Brouwer Ehsan Hajiramezanali Tommaso Biancalani Chanyoung Park Gabriele Scalia 135 0 0 22 Feb 2025
Hypothesis Generation for Materials Discovery and Design Using Goal-Driven and Constraint-Guided LLM Agents Shrinidhi Kumbhar Venkatesh Mishra Kevin Coutinho Divij Handa Ashif Iquebal Chitta Baral 111 7 0 23 Jan 2025
Episodic memory in AI agents poses risks that should be studied and mitigated Chad DeChant 137 4 0 20 Jan 2025
BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments Yusuf Roohani Jian Vora Qian Huang Zach Steinhart Alex Marson Percy Liang J. Leskovec Percy Liang Jure Leskovec LLMAG LM&Ro 146 22 0 27 May 2024
Prioritizing Safeguarding Over Autonomy: Risks of LLM Agents for Science Xiangru Tang Qiao Jin Kunlun Zhu Tongxin Yuan Yichi Zhang ... Jian Tang Zhuosheng Zhang Arman Cohan Zhiyong Lu Mark B. Gerstein LLMAG ELM 91 47 0 06 Feb 2024
The Ethics of Interaction: Mitigating Security Threats in LLMs Ashutosh Kumar Shiv Vignesh Murty Sagarika Singh Swathy Ragupathy 83 38 0 22 Jan 2024
Large Language Model based Multi-Agents: A Survey of Progress and Challenges Taicheng Guo Preslav Nakov Yaqi Wang Ruidi Chang Shichao Pei Nitesh Chawla Olaf Wiest Xiangliang Zhang LLMAG LM&Ro AI4CE LRM 156 329 0 21 Jan 2024
PaperQA: Retrieval-Augmented Generative Agent for Scientific Research Jakub Lála Odhran O'Donoghue Aleksandar Shtedritski Sam Cox Samuel G. Rodriques Andrew D. White RALM 131 88 0 08 Dec 2023
Let's Think Outside the Box: Exploring Leap-of-Thought in Large Language Models with Creative Humor Generation Shan Zhong Zhongzhan Huang Shanghua Gao Wushao Wen Liang Lin Marinka Zitnik Pan Zhou LLMAG LRM 79 40 0 05 Dec 2023
Igniting Language Intelligence: The Hitchhiker's Guide From Chain-of-Thought Reasoning to Language Agents Zhuosheng Zhang Yao Yao Aston Zhang Xiangru Tang Xinbei Ma ... Yiming Wang Mark B. Gerstein Rui Wang Gongshen Liu Hai Zhao LLMAG LM&Ro LRM 144 60 0 20 Nov 2023
MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoning Xiangru Tang Anni Zou Zhuosheng Zhang Ziming Li Yilun Zhao Xingyao Zhang Arman Cohan Mark B. Gerstein LRM LM&MA 116 171 0 16 Nov 2023
Can large language models provide useful feedback on research papers? A large-scale empirical analysis Weixin Liang Yuhui Zhang Hancheng Cao Binglu Wang Daisy Ding ... Siyu He D. Smith Yian Yin Daniel A. McFarland James Y. Zou ALM LM&MA 96 146 0 03 Oct 2023
Plug in the Safety Chip: Enforcing Constraints for LLM-driven Robot Agents Ziyi Yang S. S. Raman Ankit Parag Shah Stefanie Tellex LLMAG 88 47 0 18 Sep 2023
The Rise and Potential of Large Language Model Based Agents: A Survey Zhiheng Xi Wenxiang Chen Xin Guo Wei He Yiwen Ding ... Wenjuan Qin Yongyan Zheng Xipeng Qiu Xuanjing Huan Tao Gui LM&MA LM&Ro 3DV AI4CE 127 956 0 14 Sep 2023
Hypothesis Search: Inductive Reasoning with Language Models Ruocheng Wang E. Zelikman Gabriel Poesia Yewen Pu Nick Haber Noah D. Goodman ReLM LRM 108 112 0 11 Sep 2023
Siren's Song in the AI Ocean: A Survey on Hallucination in Large Language Models Yue Zhang Yafu Li Leyang Cui Deng Cai Lemao Liu ... Longyue Wang Anh Tuan Luu Wei Bi Freda Shi Shuming Shi RALM LRM HILM 119 579 0 03 Sep 2023
Graph of Thoughts: Solving Elaborate Problems with Large Language Models Maciej Besta Nils Blach Aleš Kubíček Robert Gerstenberger Michal Podstawski ... Joanna Gajda Tomasz Lehmann H. Niewiadomski Piotr Nyczyk Torsten Hoefler LRM AI4CE LM&Ro 169 707 0 18 Aug 2023
Enhancing Trust in LLM-Based AI Automation Agents: New Considerations and Future Challenges Sivan Schwartz Avi Yaeli Segev Shlomov LLMAG 28 25 0 10 Aug 2023
Epidemic Modeling with Generative Agents Ross Williams Niyousha Hosseinichimeh A. Majumdar Navid Ghaffarzadegan LLMAG AI4CE 60 37 0 11 Jul 2023
Building Cooperative Embodied Agents Modularly with Large Language Models Hongxin Zhang Weihua Du Jiaming Shan Qinhong Zhou Yilun Du J. Tenenbaum Tianmin Shu Chuang Gan LLMAG LM&Ro 126 176 0 05 Jul 2023
Direct Preference Optimization: Your Language Model is Secretly a Reward Model Rafael Rafailov Archit Sharma E. Mitchell Stefano Ermon Christopher D. Manning Chelsea Finn ALM 389 4,163 0 29 May 2023
Reasoning with Language Model is Planning with World Model Shibo Hao Yi Gu Haodi Ma Joshua Jiahua Hong Zhen Wang D. Wang Zhiting Hu ReLM LRM LLMAG 163 600 0 24 May 2023
MemoryBank: Enhancing Large Language Models with Long-Term Memory Wanjun Zhong Lianghong Guo Qi-Fei Gao He Ye Yanlin Wang LLMAG RALM KELM 97 138 0 17 May 2023
InstructBLIP: Towards General-purpose Vision-Language Models with Instruction Tuning Wenliang Dai Junnan Li Dongxu Li A. M. H. Tiong Junqi Zhao Weisheng Wang Boyang Albert Li Pascale Fung Steven C. H. Hoi MLLM VLM 142 2,098 0 11 May 2023
Automated Scientific Discovery: From Equation Discovery to Autonomous Discovery Systems Stefan Kramer Mattia Cerrato Jannis Brugger Sašo Džeroski Ross King 83 12 0 03 May 2023
CAMEL: Communicative Agents for "Mind" Exploration of Large Language Model Society Ge Li Hasan Hammoud Hani Itani Dmitrii Khizbullin Guohao Li SyDa ALM 130 513 0 31 Mar 2023
HuggingGPT: Solving AI Tasks with ChatGPT and its Friends in Hugging Face Yongliang Shen Kaitao Song Xu Tan Dongsheng Li Weiming Lu Yueting Zhuang MLLM 125 911 0 30 Mar 2023
LLM-Planner: Few-Shot Grounded Planning for Embodied Agents with Large Language Models Chan Hee Song Jiaman Wu Clay Washington Brian M Sadler Wei-Lun Chao Yu-Chuan Su LLMAG LM&Ro 142 422 0 08 Dec 2022
Large Language Models with Controllable Working Memory Daliang Li A. S. Rawat Manzil Zaheer Xin Wang Michal Lukasik Andreas Veit Felix X. Yu Surinder Kumar KELM 123 170 0 09 Nov 2022
ReAct: Synergizing Reasoning and Acting in Language Models Shunyu Yao Jeffrey Zhao Dian Yu Nan Du Izhak Shafran Karthik Narasimhan Yuan Cao LLMAG ReLM LRM 450 2,976 0 06 Oct 2022
ProgPrompt: Generating Situated Robot Task Plans using Large Language Models Ishika Singh Valts Blukis Arsalan Mousavian Ankit Goyal Danfei Xu Jonathan Tremblay Dieter Fox Jesse Thomason Animesh Garg LM&Ro LLMAG 175 657 0 22 Sep 2022
Inner Monologue: Embodied Reasoning through Planning with Language Models Wenlong Huang F. Xia Ted Xiao Harris Chan Jacky Liang ... Tomas Jackson Linda Luu Sergey Levine Karol Hausman Brian Ichter LLMAG LM&Ro LRM 134 922 0 12 Jul 2022
Flamingo: a Visual Language Model for Few-Shot Learning Jean-Baptiste Alayrac Jeff Donahue Pauline Luc Antoine Miech Iain Barr ... Mikolaj Binkowski Ricardo Barreira Oriol Vinyals Andrew Zisserman Karen Simonyan MLLM VLM 418 3,610 0 29 Apr 2022
Do As I Can, Not As I Say: Grounding Language in Robotic Affordances Michael Ahn Anthony Brohan Noah Brown Yevgen Chebotar Omar Cortes ... Ted Xiao Peng Xu Sichun Xu Mengyuan Yan Andy Zeng LM&Ro 195 1,988 0 04 Apr 2022
On scientific understanding with artificial intelligence Mario Krenn R. Pollice S. Guo Matteo Aldeghi Alba Cervera-Lierta ... Florian Hase A. Jinich AkshatKumar Nigam Zhenpeng Yao Alán Aspuru-Guzik 73 194 0 04 Apr 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 888 13,207 0 04 Mar 2022
Locating and Editing Factual Associations in GPT Kevin Meng David Bau A. Andonian Yonatan Belinkov KELM 251 1,389 0 10 Feb 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models Jason W. Wei Xuezhi Wang Dale Schuurmans Maarten Bosma Brian Ichter F. Xia Ed H. Chi Quoc Le Denny Zhou LM&Ro LRM AI4CE ReLM 853 9,714 0 28 Jan 2022
Text and Code Embeddings by Contrastive Pre-Training Arvind Neelakantan Tao Xu Raul Puri Alec Radford Jesse Michael Han ... Tabarak Khan Toki Sherbakov Joanne Jang Peter Welinder Lilian Weng SSL AI4TS 379 444 0 24 Jan 2022
Show Your Work: Scratchpads for Intermediate Computation with Language Models Maxwell Nye Anders Andreassen Guy Gur-Ari Henryk Michalewski Jacob Austin ... Aitor Lewkowycz Maarten Bosma D. Luan Charles Sutton Augustus Odena ReLM LRM 183 756 0 30 Nov 2021
Finetuned Language Models Are Zero-Shot Learners Jason W. Wei Maarten Bosma Vincent Zhao Kelvin Guu Adams Wei Yu Brian Lester Nan Du Andrew M. Dai Quoc V. Le ALM UQCV 251 3,789 0 03 Sep 2021
Evaluating Large Language Models Trained on Code Mark Chen Jerry Tworek Heewoo Jun Qiming Yuan Henrique Pondé ... Bob McGrew Dario Amodei Sam McCandlish Ilya Sutskever Wojciech Zaremba ELM ALM 238 5,665 0 07 Jul 2021
LoRA: Low-Rank Adaptation of Large Language Models J. E. Hu Yelong Shen Phillip Wallis Zeyuan Allen-Zhu Yuanzhi Li Shean Wang Lu Wang Weizhu Chen OffRL AI4TS AI4CE ALM AIMat 502 10,526 0 17 Jun 2021
Adaptive machine learning for protein engineering B. Hie Kevin Kaichuang Yang 69 81 0 10 Jun 2021
Zero-Shot Text-to-Image Generation Aditya A. Ramesh Mikhail Pavlov Gabriel Goh Scott Gray Chelsea Voss Alec Radford Mark Chen Ilya Sutskever VLM 420 5,000 0 24 Feb 2021
Deep learning tools for the measurement of animal behavior in neuroscience Mackenzie W. Mathis Alexander Mathis 3DV VLM 88 317 0 30 Sep 2019