GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies

7 July 2023

Papers citing "GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies"

5 / 5 papers shown

Title
Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space Alex Chen Philipe Chlenski Kenneth Munyuza A. Moretti C. A. Naesseth I. Pe’er 49 0 0 29 Jan 2025
Solving the Tree Containment Problem Using Graph Neural Networks A. Dushatskiy Esther Julien Leen Stougie L. Iersel 42 0 0 15 Apr 2024
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees Matthew J. Penn Neil Scheidwasser Joseph Penn C. Donnelly D. Duchêne Samir Bhatt 10 3 0 09 Jun 2023
Learning phylogenetic trees as hyperbolic point configurations Benjamin Wilson 3DPC 8 6 0 23 Apr 2021
VarGrad: A Low-Variance Gradient Estimator for Variational Inference Lorenz Richter Ayman Boustati Nikolas Nusken Francisco J. R. Ruiz Ömer Deniz Akyildiz DRL 136 48 0 20 Oct 2020