Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learning

6 June 2022

Papers citing "Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learning"

40 / 90 papers shown

Title
Multiple Instance Learning Framework with Masked Hard Instance Mining for Whole Slide Image Classification Wenhao Tang Sheng Huang Xiaoxian Zhang Fengtao Zhou Yi Zhang Bo Liu 34 40 0 28 Jul 2023
The Whole Pathological Slide Classification via Weakly Supervised Learning Qiehe Sun Jiawen Li Jin Xu Junru Cheng Tian Guan Yonghong He 37 0 0 12 Jul 2023
Multi-Scale Prototypical Transformer for Whole Slide Image Classification Saisai Ding Jun Wang Juncheng Li Jun Shi MedIm 29 17 0 05 Jul 2023
Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need Linhao Qu Yingfan Ma Xiao-Zhuo Luo Manning Wang Zhijian Song VLM 39 20 0 05 Jul 2023
Quilt-1M: One Million Image-Text Pairs for Histopathology Wisdom O. Ikezogwo M. S. Seyfioglu Fatemeh Ghezloo Dylan Stefan Chan Geva Fatwir Sheikh Mohammed Pavan Kumar Anand Ranjay Krishna Linda G. Shapiro CLIP VLM 143 116 0 20 Jun 2023
The Rise of AI Language Pathologists: Exploring Two-level Prompt Learning for Few-shot Weakly-supervised Whole Slide Image Classification Linhao Qu X. Luo Kexue Fu Manning Wang Zhijian Song 46 22 0 29 May 2023
S-JEA: Stacked Joint Embedding Architectures for Self-Supervised Visual Representation Learning Alvzbveta Manová A. Durrant Georgios Leontidis SSL 32 4 0 19 May 2023
Exploring shared memory architectures for end-to-end gigapixel deep learning Lucas W. Remedios L. Cai Samuel W. Remedios Karthik Ramadass Aravind Krishnan ... C. Cui Shunxing Bao Lori A. Coburn Yuankai Huo Bennett A. Landman MedIm VLM 47 0 0 24 Apr 2023
Masked Pre-Training of Transformers for Histology Image Analysis Shuai Jiang Liesbeth Hondelink A. Suriawinata Saeed Hassanpour MedIm 31 15 0 14 Apr 2023
ProtoDiv: Prototype-guided Division of Consistent Pseudo-bags for Whole-slide Image Classification Rui Yang Pei Liu Luping Ji VLM DiffM 31 9 0 13 Apr 2023
Interpretable histopathology-based prediction of disease relevant features in Inflammatory Bowel Disease biopsies using weakly-supervised deep learning R. Mokhtari A. Hamidinekoo D. Sutton A. Lewis B. Angermann ... E. Khan D. Marks N. Khachapuridze Talha Qaiser Nikolay Burlutskiy 29 5 0 20 Mar 2023
Task-specific Fine-tuning via Variational Information Bottleneck for Weakly-supervised Pathology Whole Slide Image Classification Honglin Li Chenglu Zhu Yunlong Zhang Yuxuan Sun Zhongyi Shui Wenwei Kuang S. Zheng Ling Yang 74 57 0 15 Mar 2023
Hierarchical discriminative learning improves visual representations of biomedical microscopy Cheng Jiang X. Hou A. Kondepudi Asadur Chowdury C. Freudiger D. Orringer Honglak Lee Todd C. Hollon 37 12 0 02 Mar 2023
AMIGO: Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images Ramin Nakhli Puria Azadi Moghadam Haoyang Mi H. Farahani Alexander S. Baras B. Gilks A. Bashashati MedIm ViT 40 18 0 01 Mar 2023
Patch Gradient Descent: Training Neural Networks on Very Large Images D. K. Gupta Gowreesh Mago Arnav Chavan Dilip K. Prasad 37 2 0 31 Jan 2023
Attention2Minority: A salient instance inference-based multiple instance learning for classifying small lesions in whole slide images Ziyu Su Mostafa Rezapour Usama Sajjad M. Gürcan M. Niazi 32 11 0 18 Jan 2023
Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology Jingwei Zhang S. Kapse Ke Ma Prateek Prasanna Maria Vakalopoulou Joel H. Saltz Dimitris Samaras 32 9 0 23 Dec 2022
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images Roozbeh Bazargani L. Fazli L. Goldenberg M. Gleave A. Bashashati Septimiu Salcudean MedIm 41 7 0 17 Dec 2022
AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images Pei Liu Luping Ji Feng Ye Bo Fu 36 27 0 13 Dec 2022
Giga-SSL: Self-Supervised Learning for Gigapixel Images Tristan Lazard Marvin Lerousseau Etienne Decencière Thomas Walter 22 18 0 06 Dec 2022
RLogist: Fast Observation Strategy on Whole-slide Images with Deep Reinforcement Learning Boxuan Zhao Jun Zhang Deheng Ye Jiancheng Cao Xiao Han Qiang Fu Wei Yang OffRL 31 9 0 04 Dec 2022
Vision Transformers in Medical Imaging: A Review Emerald U. Henry Onyeka Emebob C. Omonhinmin ViT MedIm 45 34 0 18 Nov 2022
Language models are good pathologists: using attention-based sequence reduction and text-pretrained transformers for efficient WSI classification Juan Pisula Katarzyna Bozek VLM MedIm 36 3 0 14 Nov 2022
Deep Learning-enabled Virtual Histological Staining of Biological Samples Bijie Bai Xilin Yang Yuzhu Li Yijie Zhang N. Pillar Aydogan Ozcan 32 155 0 13 Nov 2022
Embedding Space Augmentation for Weakly Supervised Learning in Whole-Slide Images Imaad Zaffar Guillaume Jaume Nasir M. Rajpoot Faisal Mahmood 43 4 0 31 Oct 2022
Iterative Patch Selection for High-Resolution Image Recognition Benjamin Bergner C. Lippert Aravindh Mahendran 25 12 0 24 Oct 2022
Patient-level Microsatellite Stability Assessment from Whole Slide Images By Combining Momentum Contrast Learning and Group Patch Embeddings D. Shats Hadar Hezi Guy Shani Y. Maruvka Moti Freiman 27 2 0 22 Aug 2022
Face-to-Face Contrastive Learning for Social Intelligence Question-Answering Alex Wilf Qianli Ma Paul Pu Liang Amir Zadeh Louis-Philippe Morency 41 10 0 29 Jul 2022
Efficient High-Resolution Deep Learning: A Survey Arian Bakhtiarnia Qi Zhang Alexandros Iosifidis MedIm 26 19 0 26 Jul 2022
DSCA: A Dual-Stream Network with Cross-Attention on Whole-Slide Image Pyramids for Cancer Prognosis Pei Liu Bo Fu Feng Ye Rui Yang Bin Xu Luping Ji 21 24 0 12 Jun 2022
Multiplexed Immunofluorescence Brain Image Analysis Using Self-Supervised Dual-Loss Adaptive Masked Autoencoder S. Ly Bai Lin Hung Q. Vo D. Maric B. Roysam H. V. Nguyen 40 0 0 10 May 2022
Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides A. Quiros N. Coudray A. Yeaton Xinyu Yang Bojing Liu ... H. Pass A. Moreira J. L. Quesne A. Tsirigos Ke-Fei Yuan SSL 21 5 0 04 May 2022
HiP: Hierarchical Perceiver João Carreira Skanda Koppula Daniel Zoran Adrià Recasens Catalin Ionescu ... M. Botvinick Oriol Vinyals Karen Simonyan Andrew Zisserman Andrew Jaegle VLM 41 14 0 22 Feb 2022
Masked Autoencoders Are Scalable Vision Learners Kaiming He Xinlei Chen Saining Xie Yanghao Li Piotr Dollár Ross B. Girshick ViT TPM 322 7,503 0 11 Nov 2021
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images N. Brancati A. Anniciello Pushpak Pati D. Riccio G. Scognamiglio ... A. Foncubierta G. Botti M. Gabrani Florinda Feroce Maria Frucci 51 124 0 08 Nov 2021
Localizing Objects with Self-Supervised Transformers and no Labels Oriane Siméoni Gilles Puy Huy V. Vo Simon Roburin Spyros Gidaris Andrei Bursuc P. Pérez Renaud Marlet Jean Ponce ViT 180 196 0 29 Sep 2021
Self supervised learning improves dMMR/MSI detection from histology slides across multiple cancers C. Saillard Olivier Dehaene Tanguy Marchand O. Moindrot A. Kamoun B. Schmauch S. Jégou 43 39 0 13 Sep 2021
Emerging Properties in Self-Supervised Vision Transformers Mathilde Caron Hugo Touvron Ishan Misra Hervé Jégou Julien Mairal Piotr Bojanowski Armand Joulin 389 5,832 0 29 Apr 2021
Transformer in Transformer Kai Han An Xiao Enhua Wu Jianyuan Guo Chunjing Xu Yunhe Wang ViT 321 1,528 0 27 Feb 2021
Pyramid Vision Transformer: A Versatile Backbone for Dense Prediction without Convolutions Wenhai Wang Enze Xie Xiang Li Deng-Ping Fan Kaitao Song Ding Liang Tong Lu Ping Luo Ling Shao ViT 316 3,637 0 24 Feb 2021