Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learning

6 June 2022

Papers citing "Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learning"

50 / 89 papers shown

Title
Any-to-Any Learning in Computational Pathology via Triplet Multimodal Pretraining Qichen Sun Zhengrui Guo Rui Peng Hao Chen Jinzhuo Wang MedIm 18 0 0 19 May 2025
Recent Advances in Medical Imaging Segmentation: A Survey Fares Bougourzi Abdenour Hadid OOD 44 0 0 14 May 2025
SimMIL: A Universal Weakly Supervised Pre-Training Framework for Multi-Instance Learning in Whole Slide Pathology Images Yicheng Song Tiancheng Lin Die Peng Su Yang Yi Xu MedIm 33 0 0 10 May 2025
Self-Supervision Enhances Instance-based Multiple Instance Learning Methods in Digital Pathology: A Benchmark Study Ali Mammadov Loic Le Folgoc Julien Adam Anne Buronfosse Gilles Hayem Guillaume Hocquet Pietro Gori SSL 45 0 0 02 May 2025
Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation Shahad Albastaki Anabia Sohail I. I. Ganapathi B. Alawode Asim Khan Sajid Javed Naoufel Werghi Mohammed Bennamoun Arif Mahmood 71 0 0 26 Apr 2025
Boosting multi-demographic federated learning for chest x-ray analysis using general-purpose self-supervised representations Mahshad Lotfinia Arash Tayebiarasteh Samaneh Samiei Mehdi Joodaki Soroosh Tayebi Arasteh 35 0 0 11 Apr 2025
A Survey of Pathology Foundation Model: Progress and Future Directions Conghao Xiong Hao Chen Joseph J. Y. Sung LM&MA AI4CE 58 0 0 05 Apr 2025
BioX-CPath: Biologically-driven Explainable Diagnostics for Multistain IHC Computational Pathology Amaya Gallagher-Syed Henry Senior Omnia Alwazzan Elena Pontarini Michele Bombardieri C. Pitzalis M. Lewis Michael Barnes Luca Rossi Gregory G. Slabaugh 46 0 0 26 Mar 2025
Pathological Prior-Guided Multiple Instance Learning For Mitigating Catastrophic Forgetting in Breast Cancer Whole Slide Image Classification Weixi Zheng Aoling Huang. Jingping Yuan Jingping Yuan Haoyu Zhao Zhou Zhao Yongchao Xu Thierry Géraud CLL 55 0 0 08 Mar 2025
MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention Tianyi Wang Jianan Fan Dingxin Zhang Dongnan Liu Yong-quan Xia Heng Huang Weidong Cai 39 0 0 01 Mar 2025
On the Importance of Text Preprocessing for Multimodal Representation Learning and Pathology Report Generation R. Lucassen Tijn van de Luijtgaarden Sander P.J. Moonemans Gerben E. Breimer W. Blokx M. Veta 69 0 0 26 Feb 2025
SEW: Self-calibration Enhanced Whole Slide Pathology Image Analysis Haoming Luo Xiaotian Yu Shengxuming Zhang Jiabin Xia Yang Jian ... Liang Xue Xiuming Zhang Jing Zhang Jing Zhang Zunlei Feng 79 0 0 17 Feb 2025
Unlocking adaptive digital pathology through dynamic feature learning Jiawen Li Tian Guan Qingxin Xia Yunhong Wang Xitong Ling ... Xiu-Wu Bian Zhilin Wang Lingchuan Guo Chao He Yonghong He AI4CE 36 0 0 31 Dec 2024
Efficient and Comprehensive Feature Extraction in Large Vision-Language Model for Pathology Analysis Shengxuming Zhang Weihan Li Tianhong Gao Jiacong Hu Haoming Luo Xiuming Zhang Jing Zhang Mingli Song Zunlei Feng LM&MA 103 0 0 12 Dec 2024
RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency Wentao Huang Meilong Xu Xiaoling Hu Shahira Abousamra Aniruddha Ganguly ... Prateek Prasanna Tahsin M. Kurc Joel H. Saltz Michael L. Miller Chong Chen 83 0 0 22 Nov 2024
Unsupervised Foundation Model-Agnostic Slide-Level Representation Learning Tim Lenz Peter Neidlinger M. Ligero Georg Wolflein M. Treeck Jakob Nikolas Kather 73 2 0 20 Nov 2024
HMIL: Hierarchical Multi-Instance Learning for Fine-Grained Whole Slide Image Classification Cheng Jin Luyang Luo Huangjing Lin Jun Hou Hao Chen 54 4 0 12 Nov 2024
Rethinking Transformer for Long Contextual Histopathology Whole Slide Image Analysis Honglin Li Yunlong Zhang Pingyi Chen Zhongyi Shui Chenglu Zhu Lin Yang MedIm 57 4 0 18 Oct 2024
Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology Pei Liu Luping Ji Jiaxiang Gou Bo Fu Mao Ye 38 2 0 14 Sep 2024
Phikon-v2, A large and public feature extractor for biomarker prediction Alexandre Filiot Paul Jacob Alice Mac Kain Charlie Saillard MedIm 44 17 0 13 Sep 2024
Snuffy: Efficient Whole Slide Image Classifier Hossein Jafarinia Alireza Alipanah Danial Hamdi Saeed Razavi Nahal Mirzaie M. Rohban 3DH 52 1 0 15 Aug 2024
WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering Pingyi Chen Chenglu Zhu Sunyi Zheng Honglin Li Lin Yang 57 7 0 08 Jul 2024
SCMIL: Sparse Context-aware Multiple Instance Learning for Predicting Cancer Survival Probability Distribution in Whole Slide Images Zekang Yang Hong Liu Xiangdong Wang 24 1 0 30 Jun 2024
PathAlign: A vision-language model for whole slide images in histopathology Faruk Ahmed Andrew Sellergren Lin Yang Shawn Xu Boris Babenko ... S. Shetty Daniel Golden Yun-Hui Liu David F. Steiner Ellery Wulczyn LM&MA VLM 38 15 0 27 Jun 2024
Foundational Models for Pathology and Endoscopy Images: Application for Gastric Inflammation H. Kerdegari Kyle Higgins Dennis Veselkov I. Laponogov I. Poļaka ... Junior Andrea Pescino M. Leja M. Dinis-Ribeiro T. F. Kanonnikoff Kirill Veselkov 35 3 0 26 Jun 2024
Triage of 3D pathology data via 2.5D multiple-instance learning to guide pathologist assessments Gan Gao Andrew H. Song Fiona Wang David Brenes Rui Wang Sarah S. L. Chow K. Bishop Lawrence D. True Faisal Mahmood Jonathan T. C. Liu 34 0 0 11 Jun 2024
Genomics-guided Representation Learning for Pathologic Pan-cancer Tumor Microenvironment Subtype Prediction Fangliangzi Meng Hongrun Zhang Ruodan Yan Guohui Chuai Chao Li Qi Liu MedIm 45 2 0 10 Jun 2024
Predicting Genetic Mutation from Whole Slide Images via Biomedical-Linguistic Knowledge Enhanced Multi-label Classification Gexin Huang Chenfei Wu Mingjie Li Xiaojun Chang Ling-Hao Chen Ying Sun Shen Zhao Xiaodan Liang Liang Lin MedIm 37 0 0 05 Jun 2024
MiM: Mask in Mask Self-Supervised Pre-Training for 3D Medical Image Analysis Jiaxin Zhuang Linshan Wu Qiong Wang V. Vardhanabhuti Lin Luo Hao Chen Hao Chen 57 4 0 24 Apr 2024
Cross-modal Diffusion Modelling for Super-resolved Spatial Transcriptomics Xiaofei Wang Xingxu Huang Stephen J. Price Chao Li 46 3 0 19 Apr 2024
F2FLDM: Latent Diffusion Models with Histopathology Pre-Trained Embeddings for Unpaired Frozen Section to FFPE Translation M. M. Ho Shikha Dubey Yosep Chong Beatrice Knudsen Tolga Tasdizen MedIm AI4CE 42 4 0 19 Apr 2024
Knowledge-enhanced Visual-Language Pretraining for Computational Pathology Xiao Zhou Xiaoman Zhang Chaoyi Wu Ya Zhang Weidi Xie Yanfeng Wang VLM 40 7 0 15 Apr 2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification Zhan Shi Jingwei Zhang Jun Kong Fusheng Wang MedIm 42 3 0 26 Mar 2024
Hierarchical Text-to-Vision Self Supervised Alignment for Improved Histopathology Representation Learning Hasindri Watawana Kanchana Ranasinghe Tariq Mahmood Muzammal Naseer Salman Khan Fahad Shahbaz Khan SSL 43 4 0 21 Mar 2024
Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis Jiawen Li Yuxuan Chen Hongbo Chu Qiehe Sun Tian Guan Anjia Han Yonghong He 40 28 0 12 Mar 2024
Self-Supervised Multiple Instance Learning for Acute Myeloid Leukemia Classification Salome Kazeminia Max Joosten D. Bosnacki Carsten Marr 30 2 0 08 Mar 2024
Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology Wenhao Tang Fengtao Zhou Shengyue Huang Xiang Zhu Yi Zhang Bo Liu 47 21 0 27 Feb 2024
Multiple Instance Learning for Glioma Diagnosis using Hematoxylin and Eosin Whole Slide Images: An Indian Cohort Study Ekansh Chauhan Amit Sharma M. Uppin C. V. Jawahar P. K. Vinod 32 0 0 24 Feb 2024
A self-supervised framework for learning whole slide representations X. Hou Cheng Jiang A. Kondepudi Yiwei Lyu Asadur Chowdury Honglak Lee Todd C. Hollon MedIm 33 5 0 09 Feb 2024
GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation Ali Khajegili Mirabadi Graham Archibald Amirali Darbandsari A. Contreras-Sanz Ramin Nakhli ... C. Gilks Peter C Black Gang Wang H. Farahani A. Bashashati 32 5 0 06 Feb 2024
RudolfV: A Foundation Model by Pathologists for Pathologists Jonas Dippel Barbara Feulner Tobias Winterhoff Timo Milbich Stephan Tietz ... David Horst Lukas Ruff Klaus-Robert Muller Frederick Klauschen Maximilian Alber 36 29 0 08 Jan 2024
Artificial Intelligence for Digital and Computational Pathology Andrew H. Song Guillaume Jaume Drew F. K. Williamson Ming Y. Lu Anurag J. Vaidya Tiffany R. Miller Faisal Mahmood AI4CE 30 130 0 13 Dec 2023
Long-MIL: Scaling Long Contextual Multiple Instance Learning for Histopathology Whole Slide Image Analysis Honglin Li Yunlong Zhang Chenglu Zhu Jiatong Cai Sunyi Zheng Lin Yang VLM 45 4 0 21 Nov 2023
Rotation-Agnostic Image Representation Learning for Digital Pathology Saghir Alfasly A. Shafique Peyman Nejat Jibran A. Khan Areej Alsaafin Ghazal Alabtah H. R. Tizhoosh MedIm 39 6 0 14 Nov 2023
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification Yunlong Zhang Honglin Li Yuxuan Sun Sunyi Zheng Chenglu Zhu Lin Yang 32 29 0 13 Nov 2023
Automatic Report Generation for Histopathology images using pre-trained Vision Transformers S. Sengupta Donald E. Brown VLM MedIm ViT 26 9 0 10 Nov 2023
Classifying Whole Slide Images: What Matters? Long Nguyen Aiden Nibali Joshua Millward Zhen He 32 0 0 05 Oct 2023
RoFormer for Position Aware Multiple Instance Learning in Whole Slide Image Classification Etienne Pochet Rami Maroun Roger Trullo MedIm 23 2 0 03 Oct 2023
Forensic Histopathological Recognition via a Context-Aware MIL Network Powered by Self-Supervised Contrastive Learning Chen Shen Jun Zhang Xinggong Liang Zeyi Hao Ke Li Fan Wang Zhenyuan Wang C. Lian 22 2 0 27 Aug 2023
A vision transformer-based framework for knowledge transfer from multi-modal to mono-modal lymphoma subtyping models Bilel Guetarni Féryal Windal H. Benhabiles Marianne Petit Romain Dubois Emmanuelle Leteurtre Dominique Collard DiffM 25 2 0 02 Aug 2023