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Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives

2 June 2022

Bennett A. Landman

Papers citing "Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives"

50 / 161 papers shown

Title
Which Transformer to Favor: A Comparative Analysis of Efficiency in Vision Transformers Tobias Christian Nauen Sebastián M. Palacio Federico Raue Andreas Dengel 120 4 0 18 Aug 2023
U-Net vs Transformer: Is U-Net Outdated in Medical Image Registration? Xi Jia Joseph Bartlett Tianyang Zhang Wenqi Lu Zhaowen Qiu Jinming Duan ViT MedIm 91 65 0 07 Aug 2022
Swin Deformable Attention U-Net Transformer (SDAUT) for Explainable Fast MRI Jiahao Huang Xiaodan Xing Zhifan Gao Guang Yang ViT MedIm 52 26 0 05 Jul 2022
Context-Aware Transformers For Spinal Cancer Detection and Radiological Grading Rhydian Windsor A. Jamaludin T. Kadir Andrew Zisserman ViT MedIm 33 14 0 27 Jun 2022
XMorpher: Full Transformer for Deformable Medical Image Registration via Cross Attention Jiacheng Shi Yuting He Youyong Kong J. Coatrieux H. Shu Guanyu Yang Shuo Li MedIm 78 86 0 15 Jun 2022
Patcher: Patch Transformers with Mixture of Experts for Precise Medical Image Segmentation Yanglan Ou Ye Yuan Xiaolei Huang Stephen T. C. Wong John Volpi James Z. Wang K. Wong ViT MoE MedIm 54 11 0 03 Jun 2022
BolT: Fused Window Transformers for fMRI Time Series Analysis H. Bedel Irmak Sivgin Onat Dalmaz S. Dar Tolga Çukur 114 58 0 23 May 2022
Transformer based multiple instance learning for weakly supervised histopathology image segmentation Ziniu Qian Keqin Li M. Lai E. Chang Bingzheng Wei Yubo Fan Yan Xu ViT MedIm 94 43 0 18 May 2022
Disentangling Spatial-Temporal Functional Brain Networks via Twin-Transformers Xiao-Wen Yu Lu Zhang Lin Zhao Yanjun Lyu Tianming Liu Dajiang Zhu 45 10 0 20 Apr 2022
PC-SwinMorph: Patch Representation for Unsupervised Medical Image Registration and Segmentation Lihao Liu Zhening Huang Pietro Lio Carola-Bibiane Schönlieb Angelica I. Aviles-Rivero 53 16 0 10 Mar 2022
UNeXt: MLP-based Rapid Medical Image Segmentation Network Jeya Maria Jose Valanarasu Vishal M. Patel SSeg 69 511 0 09 Mar 2022
Characterizing Renal Structures with 3D Block Aggregate Transformers Xin Yu Yucheng Tang Yinchi Zhou Riqiang Gao Qi Yang ... Yuankai Huo Zhoubing Xu Thomas A. Lasko R. Abramson Bennett A. Landman MedIm ViT 73 3 0 04 Mar 2022
cosFormer: Rethinking Softmax in Attention Zhen Qin Weixuan Sun Huicai Deng Dongxu Li Yunshen Wei Baohong Lv Junjie Yan Lingpeng Kong Yiran Zhong 80 222 0 17 Feb 2022
The Disagreement Problem in Explainable Machine Learning: A Practitioner's Perspective Satyapriya Krishna Tessa Han Alex Gu Steven Wu S. Jabbari Himabindu Lakkaraju 258 196 0 03 Feb 2022
DynaMixer: A Vision MLP Architecture with Dynamic Mixing Ziyu Wang Wenhao Jiang Yiming Zhu Li Yuan Yibing Song Wei Liu 69 44 0 28 Jan 2022
RTNet: Relation Transformer Network for Diabetic Retinopathy Multi-lesion Segmentation Shiqi Huang Jianan Li Yuze Xiao Ning Shen Tingfa Xu ViT MedIm 59 118 0 26 Jan 2022
DSFormer: A Dual-domain Self-supervised Transformer for Accelerated Multi-contrast MRI Reconstruction Bo Zhou Neel Dey Jo Schlemper S. Salehi Chi Liu James S. Duncan M. Sofka MedIm 74 57 0 26 Jan 2022
Patches Are All You Need? Asher Trockman J. Zico Kolter ViT 262 411 0 24 Jan 2022
A ConvNet for the 2020s Zhuang Liu Hanzi Mao Chaozheng Wu Christoph Feichtenhofer Trevor Darrell Saining Xie ViT 189 5,213 0 10 Jan 2022
Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images Ali Hatamizadeh V. Nath Yucheng Tang Dong Yang H. Roth Daguang Xu ViT MedIm 123 1,135 0 04 Jan 2022
Vision Transformer with Deformable Attention Zhuofan Xia Xuran Pan S. Song Li Erran Li Gao Huang ViT 93 484 0 03 Jan 2022
iSegFormer: Interactive Segmentation via Transformers with Application to 3D Knee MR Images Qin Liu Zhenlin Xu Yining Jiao Marc Niethammer ViT MedIm 86 38 0 21 Dec 2021
Explainable Medical Imaging AI Needs Human-Centered Design: Guidelines and Evidence from a Systematic Review Haomin Chen Catalina Gomez Chien-Ming Huang Mathias Unberath 96 130 0 21 Dec 2021
Semi-Supervised Medical Image Segmentation via Cross Teaching between CNN and Transformer Xiangde Luo Minhao Hu Tao Song Guotai Wang Shaoting Zhang ViT MedIm 58 206 0 09 Dec 2021
Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis Yucheng Tang Dong Yang Wenqi Li H. Roth Bennett Landman Daguang Xu V. Nath Ali Hatamizadeh ViT MedIm 121 536 0 29 Nov 2021
A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation Himashi Peiris Munawar Hayat Zhaolin Chen Gary Egan Mehrtash Harandi ViT MedIm 71 133 0 26 Nov 2021
PeCo: Perceptual Codebook for BERT Pre-training of Vision Transformers Xiaoyi Dong Jianmin Bao Ting Zhang Dongdong Chen Weiming Zhang Lu Yuan Dong Chen Fang Wen Nenghai Yu Baining Guo ViT 122 244 0 24 Nov 2021
MetaFormer Is Actually What You Need for Vision Weihao Yu Mi Luo Pan Zhou Chenyang Si Yichen Zhou Xinchao Wang Jiashi Feng Shuicheng Yan 173 914 0 22 Nov 2021
TransMorph: Transformer for unsupervised medical image registration Junyu Chen Eric C. Frey Yufan He W. Paul Segars Ye Li Yong Du ViT MedIm 137 323 0 19 Nov 2021
Masked Autoencoders Are Scalable Vision Learners Kaiming He Xinlei Chen Saining Xie Yanghao Li Piotr Dollár Ross B. Girshick ViT TPM 477 7,827 0 11 Nov 2021
Mixed Transformer U-Net For Medical Image Segmentation Hongyi Wang Shiao Xie Lanfen Lin Yutaro Iwamoto X. Han Yenwei Chen Ruofeng Tong ViT MedIm 64 252 0 08 Nov 2021
SOFT: Softmax-free Transformer with Linear Complexity Jiachen Lu Jinghan Yao Junge Zhang Martin Danelljan Hang Xu Weiguo Gao Chunjing Xu Thomas B. Schon Li Zhang 68 166 0 22 Oct 2021
GT U-Net: A U-Net Like Group Transformer Network for Tooth Root Segmentation Yunxiang Li Shuai Wang Jun Wang G. Zeng Wenjun Liu Qianni Zhang Qun Jin Yaqi Wang ViT MedIm 61 49 0 30 Sep 2021
BiTr-Unet: a CNN-Transformer Combined Network for MRI Brain Tumor Segmentation Qiran Jia Hai Shu ViT MedIm 136 72 0 25 Sep 2021
Eformer: Edge Enhancement based Transformer for Medical Image Denoising Achleshwar Luthra Harsh Sulakhe Tanish Mittal Abhishek Iyer Santosh Kumar Yadav ViT MedIm 59 83 0 16 Sep 2021
MISSFormer: An Effective Medical Image Segmentation Transformer Xiaohong Huang Zhifang Deng Dandan Li Xueguang Yuan ViT MedIm 139 184 0 15 Sep 2021
Hire-MLP: Vision MLP via Hierarchical Rearrangement Jianyuan Guo Yehui Tang Kai Han Xinghao Chen Han Wu Chao Xu Chang Xu Yunhe Wang 79 105 0 30 Aug 2021
Evaluating Transformer-based Semantic Segmentation Networks for Pathological Image Segmentation Cam-Ngoan Nguyen Zuhayr Asad Yuankai Huo ViT MedIm 43 36 0 26 Aug 2021
Is it Time to Replace CNNs with Transformers for Medical Images? Christos Matsoukas Johan Fredin Haslum Magnus P Soderberg Kevin Smith ViT OOD MedIm 72 148 0 20 Aug 2021
Polyp-PVT: Polyp Segmentation with Pyramid Vision Transformers B. Dong Wenhai Wang Deng-Ping Fan Jinpeng Li Huazhu Fu Ling Shao ViT MedIm 71 324 0 16 Aug 2021
Mobile-Former: Bridging MobileNet and Transformer Yinpeng Chen Xiyang Dai Dongdong Chen Mengchen Liu Xiaoyi Dong Lu Yuan Zicheng Liu ViT 258 491 0 12 Aug 2021
ConvNets vs. Transformers: Whose Visual Representations are More Transferable? Hong-Yu Zhou Chi-Ken Lu Sibei Yang Yizhou Yu ViT 64 54 0 11 Aug 2021
Rethinking and Improving Relative Position Encoding for Vision Transformer Kan Wu Houwen Peng Minghao Chen Jianlong Fu Hongyang Chao ViT 88 338 0 29 Jul 2021
Contextual Transformer Networks for Visual Recognition Yehao Li Ting Yao Yingwei Pan Tao Mei ViT 96 487 0 26 Jul 2021
CycleMLP: A MLP-like Architecture for Dense Prediction Shoufa Chen Enze Xie Chongjian Ge Runjian Chen Ding Liang Ping Luo 129 234 0 21 Jul 2021
The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification Ujjwal Baid S. Ghodasara S. Mohan Michel Bilello Evan Calabrese ... M. Weber A. Mahajan Bjoern Menze Adam Flanders Spyridon Bakas 143 644 0 05 Jul 2021
UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Yunhe Gao Mu Zhou Dimitris N. Metaxas MedIm ViT 76 430 0 02 Jul 2021
CSWin Transformer: A General Vision Transformer Backbone with Cross-Shaped Windows Xiaoyi Dong Jianmin Bao Dongdong Chen Weiming Zhang Nenghai Yu Lu Yuan Dong Chen B. Guo ViT 154 986 0 01 Jul 2021
Multi-Compound Transformer for Accurate Biomedical Image Segmentation Yuanfeng Ji Ruimao Zhang Huijie Wang Zhen Li Lingyun Wu Shaoting Zhang Ping Luo ViT MedIm 60 136 0 28 Jun 2021
Co-advise: Cross Inductive Bias Distillation Sucheng Ren Zhengqi Gao Tianyu Hua Zihui Xue Yonglong Tian Shengfeng He Hang Zhao 79 52 0 23 Jun 2021