Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis

29 November 2021

Wenqi Li

Bennett Landman

Papers citing "Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis"

50 / 251 papers shown

Title
SMAFormer: Synergistic Multi-Attention Transformer for Medical Image Segmentation Fuchen Zheng Xuhang Chen Weihuang Liu Haolun Li Yingtie Lei Jiahui He Chi-Man Pun Shounjun Zhou MedIm 29 11 0 31 Aug 2024
Enhancing 3D Transformer Segmentation Model for Medical Image with Token-level Representation Learning Xinrong Hu Dewen Zeng Yawen Wu Xueyang Li Yiyu Shi ViT MedIm 39 0 0 12 Aug 2024
HySparK: Hybrid Sparse Masking for Large Scale Medical Image Pre-Training Fenghe Tang Ronghao Xu Qingsong Yao Xueming Fu Quan Quan Heqin Zhu Zaiyi Liu S. Kevin Zhou SSL MedIm 40 3 0 11 Aug 2024
Scene123: One Prompt to 3D Scene Generation via Video-Assisted and Consistency-Enhanced MAE Yiying Yang Fukun Yin Jiayuan Fan Xin Chen Wanzhang Li Gang Yu VGen 44 0 0 10 Aug 2024
Dimensionality Reduction and Nearest Neighbors for Improving Out-of-Distribution Detection in Medical Image Segmentation M. Woodland Nihil Patel Austin Castelo Mais Al Taie Mohamed Eltaher ... Nakul Gupta David Victor Laura Beretta Ankit B. Patel Kristy K. Brock OOD 29 0 0 05 Aug 2024
AMAES: Augmented Masked Autoencoder Pretraining on Public Brain MRI Data for 3D-Native Segmentation Asbjorn Munk Jakob Ambsdorf S. Llambias Mads Nielsen 30 4 0 01 Aug 2024
MIST: A Simple and Scalable End-To-End 3D Medical Imaging Segmentation Framework Jingyao Wu Evan Lim T. Dang Brayden Mi Alex Balsells V. Sethu Caroline Chung Beatrice Riviere David T. Fuentes VLM 41 2 0 31 Jul 2024
DeTurb: Atmospheric Turbulence Mitigation with Deformable 3D Convolutions and 3D Swin Transformers Zhicheng Zou Nantheera Anantrasirichai 25 1 0 30 Jul 2024
Dense Self-Supervised Learning for Medical Image Segmentation Maxime Seince Loic Le Folgoc Luiz Augusto Facury de Souza Elsa Angelini SSL 24 0 0 29 Jul 2024
Aggregated Attributions for Explanatory Analysis of 3D Segmentation Models Maciej Chrabaszcz Hubert Baniecki Piotr Komorowski Szymon Płotka Przemysław Biecek 31 1 0 23 Jul 2024
FDiff-Fusion:Denoising diffusion fusion network based on fuzzy learning for 3D medical image segmentation Weiping Ding Sheng Geng Haipeng Wang Jiashuang Huang Tianyi Zhou MedIm 40 4 0 22 Jul 2024
Tissue-Contrastive Semi-Masked Autoencoders for Segmentation Pretraining on Chest CT Jie Zheng Ru Wen Haiqin Hu Lina Wei Kui Su Wei Chen Chen Liu Jun Wang 27 1 0 12 Jul 2024
Symmetry Awareness Encoded Deep Learning Framework for Brain Imaging Analysis Yang Ma Dongang Wang Peilin Liu L. Masters M. Barnett Weidong Cai Chenyu Wang 19 0 0 12 Jul 2024
SLoRD: Structural Low-Rank Descriptors for Shape Consistency in Vertebrae Segmentation Xin You Yixin Lou Minghui Zhang Chuyan Zhang Jie Yang Yun Gu 23 0 0 11 Jul 2024
Scalar Function Topology Divergence: Comparing Topology of 3D Objects I. Trofimov Daria Voronkova Eduard Tulchinskii Evgeny Burnaev Serguei Barannikov 29 0 0 11 Jul 2024
Swin SMT: Global Sequential Modeling in 3D Medical Image Segmentation Szymon Płotka Maciej Chrabaszcz Przemyslaw Biecek 39 2 0 10 Jul 2024
AnatoMask: Enhancing Medical Image Segmentation with Reconstruction-guided Self-masking Yuheng Li Tianyu Luan Yizhou Wu Shaoyan Pan Yenho Chen Xiaofeng Yang 40 4 0 09 Jul 2024
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization Yucheng Tang Yufan He Vishwesh Nath Pengfeig Guo Ruining Deng ... Ziyue Xu Holger Roth Daguang Xu Haichun Yang Yuankai Huo 30 4 0 03 Jul 2024
Evidential Concept Embedding Models: Towards Reliable Concept Explanations for Skin Disease Diagnosis Yibo Gao Zheyao Gao Xin Gao Yuanye Liu Bomin Wang Xiahai Zhuang 31 1 0 27 Jun 2024
Structural Attention: Rethinking Transformer for Unpaired Medical Image Synthesis Vu Minh Hieu Phan Yutong Xie Bowen Zhang Yuankai Qi Zhibin Liao Antonios Perperidis S. L. Phung Johan W. Verjans Minh Nguyen Nhat To MedIm 37 4 0 27 Jun 2024
Stable Diffusion Segmentation for Biomedical Images with Single-step Reverse Process Tianyu Lin Zhiguang Chen Zhonghao Yan Weijiang Yu Fudan Zheng MedIm 27 7 0 26 Jun 2024
Multi-Aperture Fusion of Transformer-Convolutional Network (MFTC-Net) for 3D Medical Image Segmentation and Visualization Siyavash Shabani Muhammad Sohaib Sahar A. Mohammed Bahram Parvin ViT MedIm 48 3 0 24 Jun 2024
Rethinking Abdominal Organ Segmentation (RAOS) in the clinical scenario: A robustness evaluation benchmark with challenging cases Xiangde Luo Zihan Li Shaoting Zhang Wenjun Liao Guotai Wang OOD 24 4 0 19 Jun 2024
Enhancing Single-Slice Segmentation with 3D-to-2D Unpaired Scan Distillation Xin Yu Qi Yang Han Liu Ho Hin Lee Yucheng Tang ... Shunxing Bao Yuankai Huo Ann Zenobia Moore Luigi Ferrucci Bennett A. Landman 33 0 0 18 Jun 2024
BrainFounder: Towards Brain Foundation Models for Neuroimage Analysis Joseph Cox Peng Liu Skylar E. Stolte Yunchao Yang Kang Liu Kyle B. See Huiwen Ju Ruogu Fang MedIm 21 13 0 14 Jun 2024
Unveiling Incomplete Modality Brain Tumor Segmentation: Leveraging Masked Predicted Auto-Encoder and Divergence Learning Zhongao Sun Jiameng Li Yuhan Wang Jiarong Cheng Qing Zhou Chun Li MedIm 28 0 0 12 Jun 2024
CAT: Coordinating Anatomical-Textual Prompts for Multi-Organ and Tumor Segmentation Zhongzhen Huang Yankai Jiang Rongzhao Zhang Shaoting Zhang Xiaofan Zhang MedIm 64 4 0 11 Jun 2024
Merlin: A Vision Language Foundation Model for 3D Computed Tomography Louis Blankemeier Joseph Paul Cohen Ashwin Kumar Dave Van Veen Syed Jamal Safdar Gardezi ... Andrew L. Wentland C. Langlotz Jason Hom S. Gatidis Akshay S. Chaudhari LM&MA MedIm 47 31 0 10 Jun 2024
Neuro-TransUNet: Segmentation of stroke lesion in MRI using transformers Muhammad Nouman M. Mabrok Essam A. Rashed 19 2 0 10 Jun 2024
XctDiff: Reconstruction of CT Images with Consistent Anatomical Structures from a Single Radiographic Projection Image Qingze Bai Tiange Liu Zhi Liu Yubing Tong Drew A Torigian J. Udupa MedIm 45 1 0 07 Jun 2024
SuperFormer: Volumetric Transformer Architectures for MRI Super-Resolution Cristhian Forigua María Escobar Pablo Arbelaez MedIm ViT 37 8 0 05 Jun 2024
FreeTumor: Advance Tumor Segmentation via Large-Scale Tumor Synthesis Linshan Wu Jiaxin Zhuang Xuefeng Ni Hao Chen MedIm 36 12 0 03 Jun 2024
Quality Sentinel: Estimating Label Quality and Errors in Medical Segmentation Datasets Yixiong Chen Zongwei Zhou Alan L. Yuille 37 1 0 01 Jun 2024
Universal and Extensible Language-Vision Models for Organ Segmentation and Tumor Detection from Abdominal Computed Tomography Jie Liu Yixiao Zhang Kang Wang Mehmet Can Yavuz Xiaoxi Chen ... Haoliang Li Yang Yang Alan L. Yuille Yucheng Tang Zongwei Zhou MedIm VLM 40 16 0 28 May 2024
Boosting Medical Image-based Cancer Detection via Text-guided Supervision from Reports Guangyu Guo Jiawen Yao Yingda Xia Tony C. W. Mok Zhilin Zheng Junwei Han Le Lu Dingwen Zhang Jian Zhou Ling Zhang 32 1 0 23 May 2024
Comprehensive Multimodal Deep Learning Survival Prediction Enabled by a Transformer Architecture: A Multicenter Study in Glioblastoma A. Gomaa Yixing Huang Amr Hagag Charlotte Schmitter Daniel Höfler ... U. Gaipl S. Semrau Christoph Bert R. Fietkau F. Putz 19 8 0 21 May 2024
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge D. Labella Ujjwal Baid O. Khanna Shan McBurney-Lin Ryan McLean ... A. Abouelatta Tanvir Rizvi Klara Willms Dann C. Martin Abdullah Okar 36 7 0 16 May 2024
Self-supervised learning improves robustness of deep learning lung tumor segmentation to CT imaging differences Jue Jiang Aneesh Rangnekar H. Veeraraghavan OOD 35 0 0 14 May 2024
HoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models Aakash Tripathi Asim Waqas Yasin Yilmaz Ghulam Rasool 36 5 0 13 May 2024
X-Diffusion: Generating Detailed 3D MRI Volumes From a Single Image Using Cross-Sectional Diffusion Models Emmanuelle Bourigault Abdullah Hamdi Amir Jamaludin MedIm 54 2 0 30 Apr 2024
Auto-Generating Weak Labels for Real & Synthetic Data to Improve Label-Scarce Medical Image Segmentation Tanvi Deshpande Eva Prakash E. Ross C. Langlotz Andrew Ng Jeya Maria Jose Valanarasu MedIm SyDa VLM 39 1 0 25 Apr 2024
Representing Part-Whole Hierarchies in Foundation Models by Learning Localizability, Composability, and Decomposability from Anatomy via Self-Supervision M. Taher Michael B. Gotway Jianming Liang MedIm 31 5 0 24 Apr 2024
MiM: Mask in Mask Self-Supervised Pre-Training for 3D Medical Image Analysis Jiaxin Zhuang Linshan Wu Qiong Wang V. Vardhanabhuti Lin Luo Hao Chen Hao Chen 57 4 0 24 Apr 2024
PRISM: A Promptable and Robust Interactive Segmentation Model with Visual Prompts Hao Li Han Liu Dewei Hu Jiacheng Wang I. Oguz VLM 40 8 0 23 Apr 2024
Adaptive Patching for High-resolution Image Segmentation with Transformers Enzhi Zhang Isaac Lyngaas Peng Chen Xiao Wang Jun Igarashi Yuankai Huo M. Wahib M. Munetomo MedIm 29 1 0 15 Apr 2024
How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model Han Gu Haoyu Dong Jichen Yang Maciej Mazurowski MedIm VLM 80 12 0 15 Apr 2024
NeRF-MAE: Masked AutoEncoders for Self-Supervised 3D Representation Learning for Neural Radiance Fields Muhammad Zubair Irshad Sergey Zakahrov Vitor Campagnolo Guizilini Adrien Gaidon Z. Kira Rares Ambrus ViT 42 12 0 01 Apr 2024
Towards a Comprehensive, Efficient and Promptable Anatomic Structure Segmentation Model using 3D Whole-body CT Scans Heng Guo Jianfeng Zhang Jiaxing Huang Tony C. W. Mok Dazhou Guo Ke Yan Le Lu Dakai Jin Minfeng Xu MedIm 24 5 0 22 Mar 2024
PARMESAN: Parameter-Free Memory Search and Transduction for Dense Prediction Tasks Philip Matthias Winter M. Wimmer David Major Dimitrios Lenis Astrid Berg Theresa Neubauer Gaia Romana De Paolis Johannes Novotny Sophia Ulonska Katja Bühler 37 0 0 18 Mar 2024
Leveraging AI Predicted and Expert Revised Annotations in Interactive Segmentation: Continual Tuning or Full Training? Tiezheng Zhang Xiaoxi Chen Chongyu Qu Alan L. Yuille Zongwei Zhou CLL 49 4 0 29 Feb 2024