Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

19 July 2018

Guotai Wang

Wenqi Li

Michael Aertsen

Jan Deprest

Sebastien Ourselin

Tom Kamiel Magda Vercauteren

Papers citing "Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks"

44 / 244 papers shown

Title
Diminishing Uncertainty within the Training Pool: Active Learning for Medical Image Segmentation V. Nath Dong Yang Bennett A. Landman Daguang Xu H. Roth 35 68 0 07 Jan 2021
Estimating Uncertainty in Neural Networks for Cardiac MRI Segmentation: A Benchmark Study Matthew Ng F. Guo L. Biswas S. Petersen Stefan K. Piechnik S. Neubauer G. Wright UQCV 17 32 0 31 Dec 2020
SkiNet: A Deep Learning Solution for Skin Lesion Diagnosis with Uncertainty Estimation and Explainability R. Singh R. Gorantla Sai Giridhar Allada N. Pratap 19 3 0 30 Dec 2020
Exploring Instance-Level Uncertainty for Medical Detection Jiawei Yang Yuan Liang Yao Zhang Weinan Song Kun Wang Lei He UQCV 21 5 0 23 Dec 2020
Leaf Segmentation and Counting with Deep Learning: on Model Certainty, Test-Time Augmentation, Trade-Offs D. Gomes Lihong Zheng 11 6 0 21 Dec 2020
Efficient Semi-Supervised Gross Target Volume of Nasopharyngeal Carcinoma Segmentation via Uncertainty Rectified Pyramid Consistency Xiangde Luo Wenjun Liao Jieneng Chen Tao Song Yinan Chen Shichuan Zhang N. Chen Guotai Wang Shaoting Zhang 23 218 0 13 Dec 2020
Temporal Representation Learning on Monocular Videos for 3D Human Pose Estimation S. Honari Victor Constantin Helge Rhodin Mathieu Salzmann Pascal Fua 3DH 34 10 0 02 Dec 2020
Better Aggregation in Test-Time Augmentation Divya Shanmugam Davis W. Blalock Guha Balakrishnan John Guttag ViT 25 145 0 23 Nov 2020
A Review of Uncertainty Quantification in Deep Learning: Techniques, Applications and Challenges Moloud Abdar Farhad Pourpanah Sadiq Hussain Dana Rezazadegan Li Liu ... Xiaochun Cao Abbas Khosravi U. Acharya V. Makarenkov S. Nahavandi BDL UQCV 56 1,883 0 12 Nov 2020
Uncertainty Estimation in Medical Image Localization: Towards Robust Anterior Thalamus Targeting for Deep Brain Stimulation Han Liu C. Cui Dario J. Englot Benoit M. Dawant 16 2 0 03 Nov 2020
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge Lucas Fidon Sebastien Ourselin Tom Kamiel Magda Vercauteren OOD MedIm 24 41 0 03 Nov 2020
Learning Loss for Test-Time Augmentation Ildoo Kim Younghoon Kim Sungwoong Kim OOD 26 90 0 22 Oct 2020
ivadomed: A Medical Imaging Deep Learning Toolbox C. Gros A. Lemay Olivier Vincent Lucas Rouhier Anthime Bucquet Joseph Paul Cohen Julien Cohen-Adad LM&MA MedIm 27 15 0 20 Oct 2020
The 2ST-UNet for Pneumothorax Segmentation in Chest X-Rays using ResNet34 as a Backbone for U-Net Ayat Abedalla Malak Abdullah M. Al-Ayyoub E. Benkhelifa 14 13 0 06 Sep 2020
Integrating uncertainty in deep neural networks for MRI based stroke analysis L. Herzog Elvis Murina Oliver Durr S. Wegener Beate Sick 10 51 0 13 Aug 2020
Uncertainty Quantification using Variational Inference for Biomedical Image Segmentation Abhinav Sagar UQCV 13 16 0 12 Aug 2020
Real-time CNN-based Segmentation Architecture for Ball Detection in a Single View Setup Gabriel Van Zandycke Christophe De Vleeschouwer 13 13 0 23 Jul 2020
Exploiting Uncertainties from Ensemble Learners to Improve Decision-Making in Healthcare AI Yingshui Tan Baihong Jin Xiangyu Yue Yuxin Chen Alberto L. Sangiovanni-Vincentelli 10 7 0 12 Jul 2020
Diagnostic Uncertainty Calibration: Towards Reliable Machine Predictions in Medical Domain Takahiro Mimori Keiko Sasada H. Matsui Issei Sato UQCV 17 6 0 03 Jul 2020
Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices Guotai Wang Michael Aertsen Jan Deprest Sebastien Ourselin Tom Kamiel Magda Vercauteren Shaoting Zhang 31 34 0 02 Jul 2020
Rethinking Anticipation Tasks: Uncertainty-aware Anticipation of Sparse Surgical Instrument Usage for Context-aware Assistance Dominik Rivoir S. Bodenstedt Isabel Funke F. Bechtolsheim Marius Distler Jürgen Weitz Stefanie Speidel 24 24 0 01 Jul 2020
Stochastic Segmentation Networks: Modelling Spatially Correlated Aleatoric Uncertainty Miguel A. B. Monteiro Loic Le Folgoc Daniel Coelho De Castro Nick Pawlowski Bernardo Marques Konstantinos Kamnitsas Mark van der Wilk Ben Glocker UQCV BDL 28 113 0 10 Jun 2020
Weakly Supervised Vessel Segmentation in X-ray Angiograms by Self-Paced Learning from Noisy Labels with Suggestive Annotation Jingyang Zhang Guotai Wang Hongzhi Xie Shuyang Zhang Ning Huang Shaoting Zhang Lixu Gu 35 41 0 27 May 2020
Uncertainty Estimation in Deep 2D Echocardiography Segmentation Lavsen Dahal Aayush Kafle Bishesh Khanal UQCV 17 10 0 19 May 2020
Improving Calibration and Out-of-Distribution Detection in Medical Image Segmentation with Convolutional Neural Networks Davood Karimi Ali Gholipour OOD 28 9 0 12 Apr 2020
$F$ , $B$ , Alpha Matting Marco Forte François Pitié 25 84 0 17 Mar 2020
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning Fernando Pérez-García Rachel Sparks Sébastien Ourselin MedIm LM&MA 147 427 0 09 Mar 2020
Greedy Policy Search: A Simple Baseline for Learnable Test-Time Augmentation Dmitry Molchanov Alexander Lyzhov Yuliya Molchanova Arsenii Ashukha Dmitry Vetrov TPM 27 84 0 21 Feb 2020
A Heteroscedastic Uncertainty Model for Decoupling Sources of MRI Image Quality Richard Shaw Carole H. Sudre Sebastien Ourselin M. Jorge Cardoso UQCV 22 13 0 31 Jan 2020
Parameters Estimation for the Cosmic Microwave Background with Bayesian Neural Networks Héctor J. Hortúa Riccardo Volpi D. Marinelli Luigi Malagò BDL 11 22 0 19 Nov 2019
A Survey on Active Learning and Human-in-the-Loop Deep Learning for Medical Image Analysis Samuel Budd E. C. Robinson Bernhard Kainz LM&MA 6 469 0 07 Oct 2019
Training-Free Uncertainty Estimation for Dense Regression: Sensitivity as a Surrogate Lu Mi Hao Wang Yonglong Tian Hao He Nir Shavit UQCV 21 30 0 28 Sep 2019
Swapped Face Detection using Deep Learning and Subjective Assessment Xinyi Ding Zohreh Raziei Eric C. Larson E. Olinick P. Krueger Michael Hahsler PICV CVBM 34 65 0 10 Sep 2019
As easy as 1, 2... 4? Uncertainty in counting tasks for medical imaging Zach Eaton-Rosen Thomas Varsavsky Sebastien Ourselin M. Jorge Cardoso UQCV 23 12 0 25 Jul 2019
Bayesian Modelling in Practice: Using Uncertainty to Improve Trustworthiness in Medical Applications David Ruhe Giovanni Cina Michele Tonutti D. D. Bruin Paul Elbers OOD 12 13 0 20 Jun 2019
Task Decomposition and Synchronization for Semantic Biomedical Image Segmentation Xuhua Ren Lichi Zhang Sahar Ahmad Dong Nie Fan Yang L. Xiang Qian Wang Dinggang Shen 19 26 0 21 May 2019
Gaze Training by Modulated Dropout Improves Imitation Learning Yuying Chen Congcong Liu L. Tai Ming Liu Bertram E. Shi 17 16 0 17 Apr 2019
CaseNet: Content-Adaptive Scale Interaction Networks for Scene Parsing Xin Jin Cuiling Lan Wenjun Zeng Zhizheng Zhang Zhibo Chen 21 7 0 17 Apr 2019
Few-shot brain segmentation from weakly labeled data with deep heteroscedastic multi-task networks Richard McKinley Michael Rebsamen Raphael Meier M. Reyes C. Rummel Roland Wiest 14 13 0 04 Apr 2019
Accuracy, Uncertainty, and Adaptability of Automatic Myocardial ASL Segmentation using Deep CNN H. P. Do Yi Guo A. Yoon K. Nayak 23 22 0 10 Dec 2018
MAMMO: A Deep Learning Solution for Facilitating Radiologist-Machine Collaboration in Breast Cancer Diagnosis Nesreen Ahmed Theodore L. Willke M. Schaar 22 32 0 30 Oct 2018
Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 19 151 0 18 Oct 2018
Simple and Scalable Predictive Uncertainty Estimation using Deep Ensembles Balaji Lakshminarayanan Alexander Pritzel Charles Blundell UQCV BDL 276 5,683 0 05 Dec 2016
Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning Y. Gal Zoubin Ghahramani UQCV BDL 287 9,156 0 06 Jun 2015