Cell Detection with Star-convex Polygons

9 June 2018

Papers citing "Cell Detection with Star-convex Polygons"

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Title
Uni-AIMS: AI-Powered Microscopy Image Analysis Yanhui Hong Nan Wang Zhiyi Xia Haoyi Tao Xi Fang ... Shengyu Li Ziqi Chen Zezhong Zhang Guolin Ke Linfeng Zhang 26 0 0 11 May 2025
RepSNet: A Nucleus Instance Segmentation model based on Boundary Regression and Structural Re-parameterization Shengchun Xiong Xiangru Li Yunpeng Zhong Wanfen Peng 72 0 0 08 May 2025
AI Assisted Cervical Cancer Screening for Cytology Samples in Developing Countries Love Panta Suraj Prasai Karishma Malla Vaidya Shyam Shrestha Suresh Manandhar 46 0 0 29 Apr 2025
Single-shot Star-convex Polygon-based Instance Segmentation for Spatially-correlated Biomedical Objects Trina De Adrian Urbanski Artur Yakimovich 36 0 0 16 Apr 2025
CyclePose -- Leveraging Cycle-Consistency for Annotation-Free Nuclei Segmentation in Fluorescence Microscopy Jonas Utz Stefan Vocht Anne Tjorven Buessen Dennis Possart Fabian Wagner Mareike Thies Mingxuan Gu S. Uderhardt Katharina Breininger MedIm 55 0 0 14 Mar 2025
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation Sanghyun Jo Seo Jin Lee Seungwoo Lee Seohyung Hong Hyungseok Seo Kyungsu Kim 53 0 0 14 Mar 2025
HistoSmith: Single-Stage Histology Image-Label Generation via Conditional Latent Diffusion for Enhanced Cell Segmentation and Classification V. Vadori Jean-Marie Graic A. Peruffo L. Finos Ujwala Kiran Chaudhari Enrico Grisan DiffM MedIm 108 0 0 12 Feb 2025
Sequence models for continuous cell cycle stage prediction from brightfield images Louis-Alexandre Leger Maxine Leonardi Andrea Salati Felix Naef Martin Weigert 68 1 0 04 Feb 2025
Geometric Framework for Cell Oversegmentation Peter Chen Bryan Chang Olivia Annette Creasey Julie Beth Sneddon Zev Gartner Yining Liu 41 0 0 03 Feb 2025
Enhancing frozen histological section images using permanent-section-guided deep learning with nuclei attention Elad Yoshai Gil Goldinger M. Haifler N. Shaked MedIm 36 0 0 10 Nov 2024
PFPs: Prompt-guided Flexible Pathological Segmentation for Diverse Potential Outcomes Using Large Vision and Language Models Can Cui Ruining Deng Junlin Guo Quan Liu Tianyuan Yao Haichun Yang Yuankai Huo VLM MedIm 34 1 0 13 Jul 2024
DenseSeg: Joint Learning for Semantic Segmentation and Landmark Detection Using Dense Image-to-Shape Representation Ron Keuth Lasse Hansen Maren Balks Ronja Jäger Anne-Nele Schröder Ludger Tüshaus Mattias P. Heinrich 35 0 0 30 May 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao Yu Gu Jianwei Yang Naoto Usuyama Ho Hin Lee ... B. Piening Carlo Bifulco Mu-Hsin Wei Hoifung Poon Sheng Wang MedIm 38 23 0 21 May 2024
Chameleon: A Data-Efficient Generalist for Dense Visual Prediction in the Wild Donggyun Kim Seongwoong Cho Semin Kim Chong Luo Seunghoon Hong VLM 47 2 0 29 Apr 2024
A Unified Framework for Microscopy Defocus Deblur with Multi-Pyramid Transformer and Contrastive Learning Yuelin Zhang Pengyu Zheng Wanquan Yan Chengyu Fang Shing Shin Cheng MedIm 48 8 0 05 Mar 2024
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images Johannes Raufeisen Kunpeng Xie Fabian Horst Till Braunschweig Jianning Li ... Jan Egger Bastian Leibe Frank Hölzle Alexander Hermans B. Puladi 33 0 0 28 Jan 2024
NCL-SM: A Fully Annotated Dataset of Images from Human Skeletal Muscle Biopsies Atif Khan Conor Lawless Amy Vincent Charlotte Warren Valeria Di Leo Tiago Gomes A. Mcgough 29 1 0 25 Nov 2023
Point-supervised Single-cell Segmentation via Collaborative Knowledge Sharing Ji Yu 27 5 0 20 Apr 2023
An Instance Segmentation Dataset of Yeast Cells in Microstructures Christoph Reich Tim Prangemeier André O. Franccani Heinz Koeppl 32 3 0 15 Apr 2023
DeDA: Deep Directed Accumulator Hang Zhang Rongguang Wang Renjiu Hu Jinwei Zhang Jiahao Nick Li MedIm 30 4 0 15 Mar 2023
BioImageLoader: Easy Handling of Bioimage Datasets for Machine Learning Seon U Lim Xingjiang Zhang E. Beaurepaire A. Chessel LM&Ro LM&MA VLM 19 1 0 02 Mar 2023
Kartezio: Evolutionary Design of Explainable Pipelines for Biomedical Image Analysis Kévin Cortacero Brienne A. McKenzie S. Muller Roxana Khazen Fanny Lafouresse ... H. Luga Oskar Staufer Michael L. Dustin S. Valitutti Sylvain Cussat-Blanc MedIm 23 15 0 28 Feb 2023
MesoGraph: Automatic Profiling of Malignant Mesothelioma Subtypes from Histological Images Mark Eastwood H. Sailem Silviu Tudor Marc Xiaohong Gao J. Offman ... W. Cookson M. Moffatt S. Popat F. Minhas J. Robertus 33 1 0 23 Feb 2023
Structure Embedded Nucleus Classification for Histopathology Images Wei Lou Xiang Wan Guanbin Li X. Lou Chenghang Li Feng Gao Haofeng Li 18 9 0 22 Feb 2023
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation Thomas Bonte Maxence Philbert Emeline Coleno E. Bertrand Arthur Imbert Thomas Walter VLM 19 1 0 10 Jan 2023
Segmentation based tracking of cells in 2D+time microscopy images of macrophages Seol Ah Park Tamara Sipka Z. Krivá G. Lutfalla M. Nguyen-Chi K. Mikula 19 3 0 02 Jan 2023
CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation M. Keaton Ram J. Zaveri Gianfranco Doretto 19 14 0 28 Dec 2022
MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy Gihun Lee Sangmook Kim Joonkee Kim Se-Young Yun MedIm 19 18 0 07 Dec 2022
μSplit: efficient image decomposition for microscopy data Ashesh Ashesh Alexander Krull M. D. Sante F. Pasqualini Florian Jug 35 4 0 23 Nov 2022
Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review Esha Sadia Nasir Arshi Parvaiz M. Fraz 39 14 0 26 Aug 2022
Weakly Supervised Deep Instance Nuclei Detection using Points Annotation in 3D Cardiovascular Immunofluorescent Images Nazanin Moradinasab Yash Sharma Laura S. Shankman Gary K. Owens Donald E. Brown 24 1 0 29 Jul 2022
Metrics reloaded: Recommendations for image analysis validation Lena Maier-Hein Annika Reinke Patrick Godau M. Tizabi Florian Buettner ... Aleksei Tiulpin Sotirios A. Tsaftaris Ben Van Calster Gaël Varoquaux Paul F. Jäger 34 218 0 03 Jun 2022
Nuclei instance segmentation and classification in histopathology images with StarDist Martin Weigert Uwe Schmidt 29 49 0 03 Mar 2022
ConvNeXt-backbone HoVerNet for nuclei segmentation and classification Jiachen Li Chixin Wang Banban Huang Zekun Zhou 21 11 0 28 Feb 2022
Bubble identification from images with machine learning methods H. Hessenkemper Sebastian Starke Yazan Atassi T. Ziegenhein D. Lucas 16 44 0 07 Feb 2022
Deep-learning in the bioimaging wild: Handling ambiguous data with deepflash2 M. Griebel Dennis Segebarth N. Stein Nina Schukraft P. Tovote R. Blum C. Flath MedIm 25 2 0 12 Nov 2021
Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images Jingru Yi P. Wu Hui Tang Bo Liu Qiaoying Huang Hui Qu Lianyi Han Wei Fan Daniel J. Hoeppner Dimitris N. Metaxas ISeg 30 16 0 14 Jun 2021
Robust 3D Cell Segmentation: Extending the View of Cellpose Dennis Eschweiler Richard S. Smith Johannes Stegmaier 27 20 0 03 May 2021
Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps Alvaro Gomariz Tiziano Portenier C. Nombela-Arrieta O. Goksel UQCV 28 6 0 23 Feb 2021
CPP-Net: Context-aware Polygon Proposal Network for Nucleus Segmentation Shengcong Chen Changxing Ding Minfeng Liu Jun Cheng Dacheng Tao 45 46 0 13 Feb 2021
How Shift Equivariance Impacts Metric Learning for Instance Segmentation J. L. Rumberger Xiaoyan Yu Peter Hirsch Melanie Dohmen Vanessa Emanuela Guarino Ashkan Mokarian Lisa Mais Jan Funke Dagmar Kainmueller 35 6 0 14 Jan 2021
FastPathology: An open-source platform for deep learning-based research and decision support in digital pathology André Pedersen Marit Valla A. Bofin Javier Pérez de Frutos Ingerid Reinertsen Erik Smistad 19 15 0 11 Nov 2020
Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks Alberto Bailoni Constantin Pape Steffen Wolf Anna Kreshuk Fred Hamprecht ISeg 42 7 0 10 Sep 2020
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection Rituparna Sarkar Suvadip Mukherjee E. Labruyère Jean-Christophe Olivo-Marin 19 11 0 19 May 2020
PatchPerPix for Instance Segmentation Peter Hirsch Lisa Mais Dagmar Kainmueller 3DV ISeg 26 30 0 21 Jan 2020
PolarMask: Single Shot Instance Segmentation with Polar Representation Enze Xie Pei Sun Xiaoge Song Wenhai Wang Ding Liang Chunhua Shen Ping Luo ISeg 24 536 0 29 Sep 2019
A Weakly Supervised Method for Instance Segmentation of Biological Cells F. Guerrero-Peña Pedro Diamel Marrero Fernández Ing Ren Tsang Alexandre Cunha 25 14 0 26 Aug 2019
Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy Martin Weigert Uwe Schmidt Robert Haase Ko Sugawara E. Myers 36 363 0 09 Aug 2019
Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes Jingru Yi Pengxiang Wu Qiaoying Huang Hui Qu Bo Liu Daniel J. Hoeppner Dimitris N. Metaxas ISeg 33 50 0 22 Jul 2019
Arbitrary-Oriented Scene Text Detection via Rotation Proposals Jianqi Ma Weiyuan Shao Hao Ye Li Wang Hong Wang Yingbin Zheng Xiangyang Xue 176 1,176 0 03 Mar 2017