Title
An overview of open source Deep Learning-based libraries for Neuroscience Louis Fabrice Tshimanga Manfredo Atzori Federico Del Pup M. Corbetta OOD 25 4 0 19 Dec 2022
Joint Self-Supervised Image-Volume Representation Learning with Intra-Inter Contrastive Clustering D. M. Nguyen Hoangvu Nguyen M. T. N. Truong T. Cao Binh Duc Nguyen Nhat Ho Paul Swoboda Shadi Albarqouni P. Xie Daniel Sonntag SSL 24 21 0 04 Dec 2022
MONAI: An open-source framework for deep learning in healthcare M. Jorge Cardoso Wenqi Li Richard Brown Nic Ma E. Kerfoot ... Klaus H. Maier-Hein S. Aylward Prerna Dogra Sebastien Ourselin Andrew Feng 48 482 0 04 Nov 2022
Integrative Imaging Informatics for Cancer Research: Workflow Automation for Neuro-oncology (I3CR-WANO) Satrajit Chakrabarty S. A. Abidi Mina S. Mousa Mahati Mokkarala Isabelle Hren ... Yuzhuo Su Sherry Thorpe Caroline Chung Aristeidis Sotiras Daniel S. Marcus 30 8 0 06 Oct 2022
Exploration of Various Deep Learning Models for Increased Accuracy in Automatic Polyp Detection Ariel E. Isidro Arnel C. Fajardo Alexander A. Hernandez MedIm 16 0 0 04 Mar 2022
Augmentation based unsupervised domain adaptation Mauricio Orbes-Arteaga Thomas Varsavsky Lauge Sørensen Mads Nielsen A. Pai Sebastien Ourselin Marc Modat Jorge Cardoso OOD 27 3 0 23 Feb 2022
Generation of microbial colonies dataset with deep learning style transfer J. Pawlowski Sylwia Majchrowska Tomasz Golan 22 22 0 06 Nov 2021
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces Helena Williams J. Pedrosa L. Cattani S. Housmans Tom Kamiel Magda Vercauteren Jan Deprest Jan D'hooge 16 7 0 25 Oct 2021
A Decoupled Uncertainty Model for MRI Segmentation Quality Estimation Richard Shaw Carole H. Sudre Sebastien Ourselin M. Jorge Cardoso H. Pemberton UQCV 27 5 0 06 Sep 2021
spectrai: A deep learning framework for spectral data C. Horgan Mads S. Bergholt VLM 21 4 0 17 Aug 2021
Recent advances and clinical applications of deep learning in medical image analysis Xuxin Chen Ximing Wang Kecheng Zhang K. Fung T. Thai K. Moore Robert S. Mannel Hong Liu B. Zheng Y. Qiu OOD 18 572 0 27 May 2021
Medical Transformer: Universal Brain Encoder for 3D MRI Analysis E. Jun Seungwoo Jeong Da-Woon Heo Heung-Il Suk ViT MedIm 40 42 0 28 Apr 2021
Artificial Intelligence in Tumor Subregion Analysis Based on Medical Imaging: A Review Mingquan Lin Jacob F. Wynne Y. Lei Tonghe Wang W. Curran Tian Liu Xiaofeng Yang 35 24 0 25 Mar 2021
Learning Multi-Modal Volumetric Prostate Registration with Weak Inter-Subject Spatial Correspondence Oleksii Bashkanov Anneke Meyer D. Schindele M. Schostak Klaus D. Tönnies C. Hansen Marko Rak 14 7 0 09 Feb 2021
SoftSeg: Advantages of soft versus binary training for image segmentation C. Gros A. Lemay Julien Cohen-Adad 33 70 0 18 Nov 2020
w-Net: Dual Supervised Medical Image Segmentation Model with Multi-Dimensional Attention and Cascade Multi-Scale Convolution Bo Wang Lei Wang Junyang Chen Zhenghua Xu Thomas Lukasiewicz Zhigang Fu 35 7 0 15 Nov 2020
DeepReg: a deep learning toolkit for medical image registration Yunguan Fu N. M. Brown Shaheer U. Saeed Adrià Casamitjana Zachary Michael Cieman Baum ... E. Bonmati Daniel C. Alexander Matthew J. Clarkson Tom Kamiel Magda Vercauteren Yipeng Hu VLM MedIm 19 32 0 04 Nov 2020
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge Lucas Fidon Sebastien Ourselin Tom Kamiel Magda Vercauteren OOD MedIm 24 41 0 03 Nov 2020
3D Segmentation Networks for Excessive Numbers of Classes: Distinct Bone Segmentation in Upper Bodies Eva Schnider Antal Huck-Horváth G. Rauter A. Zam M. Müller-Gerbl Philippe C. Cattin 19 10 0 14 Oct 2020
Test-time Unsupervised Domain Adaptation Thomas Varsavsky Mauricio Orbes-Arteaga Carole H. Sudre M. Graham P. Nachev M. Jorge Cardoso OOD 19 55 0 05 Oct 2020
Learning Semantics-enriched Representation via Self-discovery, Self-classification, and Self-restoration F. Haghighi M. Taher Zongwei Zhou Michael B. Gotway Jianming Liang MedIm 21 65 0 14 Jul 2020
SenseCare: A Research Platform for Medical Image Informatics and Interactive 3D Visualization Qi Duan Guotai Wang Rui Wang Chaohao Fu Xinjun Li ... Xinglong Liu Qing Xia Zhiqiang Hu Ning Huang Shaoting Zhang 40 18 0 03 Apr 2020
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning Fernando Pérez-García Rachel Sparks Sébastien Ourselin MedIm LM&MA 144 427 0 09 Mar 2020
CHAOS Challenge -- Combined (CT-MR) Healthy Abdominal Organ Segmentation A. Emre Kavur N. Gezer M. Baris Sinem Aslan Pierre-Henri Conze ... Klaus H. Maier-Hein G. Akar Gözde B. Ünal O. Dicle M. Alper Selver 50 611 0 17 Jan 2020
A $^3$ DSegNet: Anatomy-aware artifact disentanglement and segmentation network for unpaired segmentation, artifact reduction, and modality translation Y. Lyu Haofu Liao Heqin Zhu S. Kevin Zhou MedIm 22 4 0 02 Jan 2020
IrisNet: Deep Learning for Automatic and Real-time Tongue Contour Tracking in Ultrasound Video Data using Peripheral Vision Mohammad Mozaffari Md. Aminur Rab Ratul Won-Sook Lee 28 2 0 10 Nov 2019
MIScnn: A Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning Dominik Muller Frank Kramer 20 117 0 21 Oct 2019
CompareNet: Anatomical Segmentation Network with Deep Non-local Label Fusion Yuan Liang Weinan Song J. Dym Kun Wang Lei He 3DPC 28 6 0 10 Oct 2019
Stochastic Filter Groups for Multi-Task CNNs: Learning Specialist and Generalist Convolution Kernels Felix J. S. Bragman Ryutaro Tanno Sebastien Ourselin Daniel C. Alexander M. Jorge Cardoso 24 86 0 26 Aug 2019
Multi-Domain Adaptation in Brain MRI through Paired Consistency and Adversarial Learning Mauricio Orbes-Arteaga Thomas Varsavsky Carole H. Sudre Zach Eaton-Rosen Lewis J. Haddow ... A. Pai Sébastien Ourselin Marc Modat P. Nachev M. Jorge Cardoso OOD 17 40 0 16 Aug 2019
Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation R. Dorent Samuel Joutard Marc Modat Sébastien Ourselin Tom Kamiel Magda Vercauteren MedIm 33 117 0 25 Jul 2019
Conditional Segmentation in Lieu of Image Registration Yipeng Hu Eli Gibson D. Barratt M. Emberton J. A. Noble Tom Kamiel Magda Vercauteren 32 22 0 30 Jun 2019
Brain MR Image Segmentation in Small Dataset with Adversarial Defense and Task Reorganization Xuhua Ren Lichi Zhang Qian Wang D. Shen 21 10 0 25 Jun 2019
Task Decomposition and Synchronization for Semantic Biomedical Image Segmentation Xuhua Ren Lichi Zhang Sahar Ahmad Dong Nie Fan Yang L. Xiang Qian Wang D. Shen 19 26 0 21 May 2019
Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks Amod Jog P. E. Grant J. Jacobson A. Kouwe E. Meintjes Bruce Fischl Lilla Zöllei 30 6 0 27 Apr 2019
Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 14 151 0 18 Oct 2018
GANs for Medical Image Analysis Salome Kazeminia Christoph Baur Arjan Kuijper Bram van Ginneken Nassir Navab Shadi Albarqouni Anirban Mukhopadhyay MedIm AI4CE 18 408 0 13 Sep 2018
Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks Guotai Wang Wenqi Li Michael Aertsen Jan Deprest Sebastien Ourselin Tom Kamiel Magda Vercauteren UQCV MedIm OOD 49 582 0 19 Jul 2018
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration Yipeng Hu Marc Modat Eli Gibson Wenqi Li N. Ghavami ... M. Emberton Sébastien Ourselin J. A. Noble D. Barratt Tom Kamiel Magda Vercauteren 45 381 0 09 Jul 2018
Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictions Zach Eaton-Rosen Felix J. S. Bragman Sotirios Bisdas Sebastien Ourselin M. Jorge Cardoso UQCV 23 85 0 22 Jun 2018
Uncertainty in multitask learning: joint representations for probabilistic MR-only radiotherapy planning Felix J. S. Bragman Ryutaro Tanno Zach Eaton-Rosen Wenqi Li D. Hawkes Sebastien Ourselin Daniel C. Alexander J. McClelland M. Jorge Cardoso UQCV 33 49 0 18 Jun 2018
Automated Mouse Organ Segmentation: A Deep Learning Based Solution N. Ashish M. Brusniak 18 2 0 24 Apr 2018
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network E. Bonmati Yipeng Hu Nikhil Sindhwani H. Dietz Jan D'hooge D. Barratt Jan Deprest Tom Kamiel Magda Vercauteren 29 30 0 18 Dec 2017
Label-driven weakly-supervised learning for multimodal deformable image registration Yipeng Hu Marc Modat Eli Gibson N. Ghavami E. Bonmati C. Moore M. Emberton J. A. Noble D. Barratt Tom Kamiel Magda Vercauteren 26 142 0 05 Nov 2017
TensorLayer: A Versatile Library for Efficient Deep Learning Development Hao Dong A. Supratak Luo Mai Fangde Liu A. Oehmichen Simiao Yu Yike Guo 59 114 0 26 Jul 2017
MatConvNet - Convolutional Neural Networks for MATLAB Andrea Vedaldi Karel Lenc 183 2,946 0 15 Dec 2014