Tx-LLM: A Large Language Model for Therapeutics

10 June 2024

Juan Manuel Zambrano Chaves

Tao Tu

Papers citing "Tx-LLM: A Large Language Model for Therapeutics"

25 / 25 papers shown

Title
Towards Scientific Intelligence: A Survey of LLM-based Scientific Agents Shuo Ren Pu Jian Zhenjiang Ren Chunlin Leng Can Xie Jiajun Zhang LLMAG AI4CE 88 1 0 31 Mar 2025
RAG-Enhanced Collaborative LLM Agents for Drug Discovery Namkyeong Lee Edward De Brouwer Ehsan Hajiramezanali Tommaso Biancalani Chanyoung Park Gabriele Scalia 89 0 0 22 Feb 2025
MAMMAL -- Molecular Aligned Multi-Modal Architecture and Language Yoel Shoshan Moshiko Raboh Michal Ozery-Flato Vadim Ratner Alex Golts ... Sharon Kurant Joseph A. Morrone Parthasarathy Suryanarayanan Michal Rosen-Zvi Efrat Hexter 63 1 0 28 Oct 2024
LabSafety Bench: Benchmarking LLMs on Safety Issues in Scientific Labs Yujun Zhou Jingdong Yang Kehan Guo Pin-Yu Chen Tian Gao ... Tian Gao Werner Geyer Nuno Moniz Nitesh V Chawla Xiangliang Zhang 67 4 0 18 Oct 2024
ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training Le Zhuo Zewen Chi Minghao Xu Heyan Huang Heqi Zheng Conghui He Xian-Ling Mao Wentao Zhang 128 12 0 28 Feb 2024
LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Dataset Botao Yu Frazier N. Baker Ziqi Chen Xia Ning Huan Sun LM&MA 74 48 0 14 Feb 2024
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations Qizhi Pei Wei Zhang Jinhua Zhu Kehan Wu Kaiyuan Gao Lijun Wu Yingce Xia Rui Yan 54 68 0 11 Oct 2023
Structure to Property: Chemical Element Embeddings and a Deep Learning Approach for Accurate Prediction of Chemical Properties S. Shermukhamedov Dilorom Mamurjonova Michael Probst 27 3 0 17 Sep 2023
Otter-Knowledge: benchmarks of multimodal knowledge graph representation learning from different sources for drug discovery Hoang Thanh Lam M. Sbodio Marcos Martínez Galindo Mykhaylo Zayats Raúl Fernández-Díaz Víctor Valls Gabriele Picco Cesar Berrospi Ramis V. López 23 8 0 22 Jun 2023
What can Large Language Models do in chemistry? A comprehensive benchmark on eight tasks Taicheng Guo Kehan Guo B. Nan Zhengwen Liang Zhichun Guo Nitesh Chawla Olaf Wiest Xiangliang Zhang ELM 95 136 0 27 May 2023
ChemCrow: Augmenting large-language models with chemistry tools Andres M Bran Sam Cox Oliver Schilter Carlo Baldassari Andrew D. White P. Schwaller LLMAG 74 374 0 11 Apr 2023
Large Language Models Encode Clinical Knowledge K. Singhal Shekoofeh Azizi T. Tu S. S. Mahdavi Jason W. Wei ... A. Rajkomar Joelle Barral Christopher Semturs Alan Karthikesalingam Vivek Natarajan LM&MA ELM AI4MH 109 2,283 0 26 Dec 2022
Leveraging Large Language Models for Multiple Choice Question Answering Joshua Robinson Christopher Rytting David Wingate ELM 159 191 0 22 Oct 2022
SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction Qizhi Pei Lijun Wu Jinhua Zhu Yingce Xia Shufang Xia Tao Qin Haiguang Liu Tie-Yan Liu Rui Yan 33 21 0 20 Jun 2022
Pathways: Asynchronous Distributed Dataflow for ML P. Barham Aakanksha Chowdhery J. Dean Sanjay Ghemawat Steven Hand ... Parker Schuh Ryan Sepassi Laurent El Shafey C. A. Thekkath Yonghui Wu GNN MoE 88 128 0 23 Mar 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 703 12,525 0 04 Mar 2022
EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction Hannes Stärk O. Ganea L. Pattanaik Regina Barzilay Tommi Jaakkola 64 265 0 07 Feb 2022
TITAN: T Cell Receptor Specificity Prediction with Bimodal Attention Networks Anna Weber Jannis Born María Rodríguez Martínez 19 131 0 21 Apr 2021
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development Kexin Huang Tianfan Fu Wenhao Gao Yue Zhao Yusuf Roohani J. Leskovec Connor W. Coley Cao Xiao Jimeng Sun Marinka Zitnik OOD LM&MA 52 272 0 18 Feb 2021
HINT: Hierarchical Interaction Network for Trial Outcome Prediction Leveraging Web Data Tianfan Fu Kexin Huang Cao Xiao Lucas Glass Jimeng Sun 67 61 0 08 Feb 2021
Language Models are Few-Shot Learners Tom B. Brown Benjamin Mann Nick Ryder Melanie Subbiah Jared Kaplan ... Christopher Berner Sam McCandlish Alec Radford Ilya Sutskever Dario Amodei BDL 507 41,106 0 28 May 2020
Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer Colin Raffel Noam M. Shazeer Adam Roberts Katherine Lee Sharan Narang Michael Matena Yanqi Zhou Wei Li Peter J. Liu AIMat 296 19,824 0 23 Oct 2019
Combining docking pose rank and structure with deep learning improves protein-ligand binding mode prediction Joseph A. Morrone Matteo Terreran T. Huynh Heng Luo Wendy D. Cornell 18 76 0 07 Oct 2019
Analyzing Learned Molecular Representations for Property Prediction Kevin Kaichuang Yang Kyle Swanson Wengong Jin Connor W. Coley Philipp Eiden ... Andrew Palmer Volker Settels Tommi Jaakkola K. Jensen Regina Barzilay 84 1,305 0 02 Apr 2019
Learning Graph-Level Representation for Drug Discovery Junying Li Deng Cai Xiaofei He GNN AI4CE 49 116 0 12 Sep 2017