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CLIBD: Bridging Vision and Genomics for Biodiversity Monitoring at Scale

27 May 2024

ZeMing Gong

Austin T. Wang

Joakim Bruslund Haurum

Papers citing "CLIBD: Bridging Vision and Genomics for Biodiversity Monitoring at Scale"

27 / 27 papers shown

Title
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs Sheng Zhang Yanbo Xu Naoto Usuyama Hanwen Xu J. Bagga ... Carlo Bifulco M. Lungren Tristan Naumann Sheng Wang Hoifung Poon LM&MA MedIm 233 233 0 10 Jan 2025
BioCLIP: A Vision Foundation Model for the Tree of Life Samuel Stevens Jiaman Wu Matthew J Thompson Elizabeth G Campolongo Chan Hee Song ... Wasila M Dahdul Charles V. Stewart Tanya Berger-Wolf Wei-Lun Chao Yu-Chuan Su 99 76 0 30 Nov 2023
BarcodeBERT: Transformers for Biodiversity Analysis Pablo Millán Arias Niousha Sadjadi Monireh Safari ZeMing Gong Austin T. Wang ... Iuliia Zarubiieva Dirk Steinke Lila Kari Angel X. Chang Graham W. Taylor 121 7 0 04 Nov 2023
Towards a Visual-Language Foundation Model for Computational Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Ivy Liang ... Andrew Zhang L. Le Georg Gerber Anil V. Parwani Faisal Mahmood VLM MedIm 108 46 0 24 Jul 2023
A Step Towards Worldwide Biodiversity Assessment: The BIOSCAN-1M Insect Dataset Zahra Gharaee ZeMing Gong Nicholas Pellegrino Iuliia Zarubiieva Joakim Bruslund Haurum ... S. Ratnasingham D. Steinke Angel X. Chang Graham W. Taylor Paul Fieguth 86 27 0 19 Jul 2023
HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution Eric N. D. Nguyen Michael Poli Marjan Faizi A. Thomas Callum Birch-Sykes ... Stefano Massaroli Yoshua Bengio Stefano Ermon S. Baccus Christopher Ré MedIm 98 258 0 27 Jun 2023
Quilt-1M: One Million Image-Text Pairs for Histopathology Wisdom O. Ikezogwo M. S. Seyfioglu Fatemeh Ghezloo Dylan Stefan Chan Geva Fatwir Sheikh Mohammed Pavan Kumar Anand Ranjay Krishna Linda G. Shapiro CLIP VLM 309 125 0 20 Jun 2023
Sigmoid Loss for Language Image Pre-Training Xiaohua Zhai Basil Mustafa Alexander Kolesnikov Lucas Beyer CLIP VLM 265 1,200 0 27 Mar 2023
Contrastive language and vision learning of general fashion concepts P. Chia Giuseppe Attanasio Federico Bianchi Silvia Terragni A. Magalhães Diogo Gonçalves C. Greco Jacopo Tagliabue CLIP 110 44 0 08 Apr 2022
BLIP: Bootstrapping Language-Image Pre-training for Unified Vision-Language Understanding and Generation Junnan Li Dongxu Li Caiming Xiong Guosheng Lin MLLM BDL VLM CLIP 557 4,421 0 28 Jan 2022
TriCoLo: Trimodal Contrastive Loss for Text to Shape Retrieval Yue Ruan Han-Hung Lee Yiming Zhang Ke Zhang Angel X. Chang 88 21 0 19 Jan 2022
Grounded Language-Image Pre-training Liunian Harold Li Pengchuan Zhang Haotian Zhang Jianwei Yang Chunyuan Li ... Lu Yuan Lei Zhang Lei Li Kai-Wei Chang Jianfeng Gao ObjD VLM 148 1,069 0 07 Dec 2021
Fine-Grained Image Analysis with Deep Learning: A Survey Xiu-Shen Wei Yi-Zhe Song Oisin Mac Aodha Jianxin Wu Yuxin Peng Jinhui Tang Jian Yang Serge Belongie 137 291 0 11 Nov 2021
CLOOB: Modern Hopfield Networks with InfoLOOB Outperform CLIP Andreas Fürst Elisabeth Rumetshofer Johannes Lehner Viet-Hung Tran Fei Tang ... David P. Kreil Michael K Kopp Günter Klambauer Angela Bitto-Nemling Sepp Hochreiter VLM CLIP 308 104 0 21 Oct 2021
Supervision Exists Everywhere: A Data Efficient Contrastive Language-Image Pre-training Paradigm Yangguang Li Feng Liang Lichen Zhao Yufeng Cui Wanli Ouyang Jing Shao F. Yu Junjie Yan VLM CLIP 162 458 0 11 Oct 2021
Fine-Grained Zero-Shot Learning with DNA as Side Information Sarkhan Badirli Zeynep Akata G. Mohler Christel Picard M. M. Dundar SyDa BDL 120 36 0 29 Sep 2021
When Does Contrastive Visual Representation Learning Work? Elijah Cole Xuan S. Yang Kimberly Wilber Oisin Mac Aodha Serge Belongie SSL 88 125 0 12 May 2021
VATT: Transformers for Multimodal Self-Supervised Learning from Raw Video, Audio and Text Hassan Akbari Liangzhe Yuan Rui Qian Wei-Hong Chuang Shih-Fu Chang Huayu Chen Boqing Gong ViT 335 590 0 22 Apr 2021
Scaling Up Visual and Vision-Language Representation Learning With Noisy Text Supervision Chao Jia Yinfei Yang Ye Xia Yi-Ting Chen Zarana Parekh Hieu H. Pham Quoc V. Le Yun-hsuan Sung Zhen Li Tom Duerig VLM CLIP 480 3,906 0 11 Feb 2021
Grafit: Learning fine-grained image representations with coarse labels Hugo Touvron Alexandre Sablayrolles Matthijs Douze Matthieu Cord Hervé Jégou SSL 89 68 0 25 Nov 2020
Contrastive Learning of Medical Visual Representations from Paired Images and Text Yuhao Zhang Hang Jiang Yasuhide Miura Christopher D. Manning C. Langlotz MedIm 150 768 0 02 Oct 2020
What Should Not Be Contrastive in Contrastive Learning Tete Xiao Xiaolong Wang Alexei A. Efros Trevor Darrell SSL DRL 96 303 0 13 Aug 2020
Self-Supervised MultiModal Versatile Networks Jean-Baptiste Alayrac Adrià Recasens R. Schneider Relja Arandjelović Jason Ramapuram J. Fauw Lucas Smaira Sander Dieleman Andrew Zisserman SSL 154 375 0 29 Jun 2020
Presence-Only Geographical Priors for Fine-Grained Image Classification Oisin Mac Aodha Elijah Cole Pietro Perona 100 167 0 12 Jun 2019
Audio-Visual Scene Analysis with Self-Supervised Multisensory Features Andrew Owens Alexei A. Efros SSL 100 754 0 10 Apr 2018
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction Leland McInnes John Healy James Melville 214 9,492 0 09 Feb 2018
Fine-graind Image Classification via Combining Vision and Language Xiangteng He Yuxin Peng VLM 81 165 0 10 Apr 2017