Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey

3 March 2024

Rui Yan

Papers citing "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

20 / 20 papers shown

Title
Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoning Yibo Yan Shen Wang Jiahao Huo Jingheng Ye Zhendong Chu Xuming Hu Philip S. Yu Carla P. Gomes B. Selman Qingsong Wen LRM 127 9 0 05 Feb 2025
ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoning Xiangru Tang Tianyu Hu Muyang Ye Yanjun Shao Xunjian Yin ... Pan Lu Zhuosheng Zhang Yilun Zhao Arman Cohan Mark B. Gerstein LLMAG LRM AI4CE 69 6 0 11 Jan 2025
Chemical Language Model Linker: blending text and molecules with modular adapters Yifan Deng Spencer S. Ericksen Anthony Gitter 30 1 0 26 Oct 2024
Text-guided Diffusion Model for 3D Molecule Generation Yanchen Luo Fan Zhang Sihang Li Zhiyuan Liu Jiancan Wu An Zhang Wenjie Du Xiang Wang 36 6 0 04 Oct 2024
ProtChatGPT: Towards Understanding Proteins with Large Language Models Chao Wang Hehe Fan Ruijie Quan Yi Yang 26 13 0 15 Feb 2024
ChemLLM: A Chemical Large Language Model Di Zhang Wei Liu Qian Tan Jingdan Chen Hang Yan ... Dongzhan Zhou Shufei Zhang Mao Su Han-Sen Zhong Yuqiang Li AI4MH 42 32 0 10 Feb 2024
DrugAssist: A Large Language Model for Molecule Optimization Geyan Ye Xibao Cai Houtim Lai Xing Wang Junhong Huang Longyue Wang Wei Liu Xian Zeng 51 23 0 28 Dec 2023
Mining Patents with Large Language Models Elucidates the Chemical Function Landscape Clayton W. Kosonocky Claus O. Wilke E. Marcotte A. D. Ellington 36 3 0 15 Sep 2023
A Study of Generative Large Language Model for Medical Research and Healthcare C.A.I. Peng Xi Yang Aokun Chen Kaleb E. Smith Nima M. Pournejatian ... W. Hogan E. Shenkman Yi Guo Jiang Bian Yonghui Wu LM&MA ELM AI4MH 155 244 0 22 May 2023
Towards Unified AI Drug Discovery with Multiple Knowledge Modalities Yi Luo Xing Yi Liu Kai Yang Kui Huang Massimo Hong Jiahuan Zhang Yushuai Wu Zaiqing Nie OffRL 37 4 0 17 Apr 2023
Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language Philipp Seidl Andreu Vall Sepp Hochreiter G. Klambauer 65 37 0 06 Mar 2023
BLIP-2: Bootstrapping Language-Image Pre-training with Frozen Image Encoders and Large Language Models Junnan Li Dongxu Li Silvio Savarese Steven C. H. Hoi VLM MLLM 278 4,244 0 30 Jan 2023
A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Bing-Huang Su Dazhao Du Zhao-Qing Yang Yujie Zhou Jiangmeng Li Anyi Rao Haoran Sun Zhiwu Lu Ji-Rong Wen 44 107 0 12 Sep 2022
The Diminishing Returns of Masked Language Models to Science Zhi Hong Aswathy Ajith Gregory Pauloski Eamon Duede Kyle Chard Ian Foster 41 18 0 23 May 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 325 11,953 0 04 Mar 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models Jason W. Wei Xuezhi Wang Dale Schuurmans Maarten Bosma Brian Ichter F. Xia Ed H. Chi Quoc Le Denny Zhou LM&Ro LRM AI4CE ReLM 389 8,495 0 28 Jan 2022
OntoProtein: Protein Pretraining With Gene Ontology Embedding Ningyu Zhang Zhen Bi Xiaozhuan Liang Shuyang Cheng Haosen Hong Shumin Deng J. Lian Qiang Zhang Huajun Chen 99 90 0 23 Jan 2022
The Power of Scale for Parameter-Efficient Prompt Tuning Brian Lester Rami Al-Rfou Noah Constant VPVLM 280 3,848 0 18 Apr 2021
PubMedQA: A Dataset for Biomedical Research Question Answering Qiao Jin Bhuwan Dhingra Zhengping Liu William W. Cohen Xinghua Lu 225 812 0 13 Sep 2019
MoleculeNet: A Benchmark for Molecular Machine Learning Zhenqin Wu Bharath Ramsundar Evan N. Feinberg Joseph Gomes C. Geniesse Aneesh S. Pappu K. Leswing Vijay S. Pande OOD 202 1,778 0 02 Mar 2017