How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction?

21 February 2024

Papers citing "How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction?"

30 / 30 papers shown

Title
Llama 2: Open Foundation and Fine-Tuned Chat Models Hugo Touvron Louis Martin Kevin R. Stone Peter Albert Amjad Almahairi ... Sharan Narang Aurelien Rodriguez Robert Stojnic Sergey Edunov Thomas Scialom AI4MH ALM 381 12,044 0 18 Jul 2023
End-to-End $n$ -ary Relation Extraction for Combination Drug Therapies Yuhang Jiang Ramakanth Kavuluru 67 7 0 29 Mar 2023
Self-Instruct: Aligning Language Models with Self-Generated Instructions Yizhong Wang Yeganeh Kordi Swaroop Mishra Alisa Liu Noah A. Smith Daniel Khashabi Hannaneh Hajishirzi ALM SyDa LRM 142 2,247 0 20 Dec 2022
Scaling Instruction-Finetuned Language Models Hyung Won Chung Le Hou Shayne Longpre Barret Zoph Yi Tay ... Jacob Devlin Adam Roberts Denny Zhou Quoc V. Le Jason W. Wei ReLM LRM 206 3,150 0 20 Oct 2022
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining Renqian Luo Liai Sun Yingce Xia Tao Qin Sheng Zhang Hoifung Poon Tie-Yan Liu MedIm AI4CE LM&MA 97 841 0 19 Oct 2022
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model Hongyi Yuan Zheng Yuan Ruyi Gan Jiaxing Zhang Yutao Xie Sheng Yu LM&MA 74 131 0 08 Apr 2022
A sequence-to-sequence approach for document-level relation extraction John Giorgi Gary D. Bader Bo Wang 97 52 0 03 Apr 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 886 13,176 0 04 Mar 2022
Multitask Prompted Training Enables Zero-Shot Task Generalization Victor Sanh Albert Webson Colin Raffel Stephen H. Bach Lintang Sutawika ... T. Bers Stella Biderman Leo Gao Thomas Wolf Alexander M. Rush LRM 355 1,708 0 15 Oct 2021
Discovering Drug-Target Interaction Knowledge from Biomedical Literature Yutai Hou Yingce Xia Lijun Wu Shufang Xie Yang Fan Jinhua Zhu Wanxiang Che Tao Qin Tie-Yan Liu 53 15 0 27 Sep 2021
Finetuned Language Models Are Zero-Shot Learners Jason W. Wei Maarten Bosma Vincent Zhao Kelvin Guu Adams Wei Yu Brian Lester Nan Du Andrew M. Dai Quoc V. Le ALM UQCV 230 3,782 0 03 Sep 2021
SciFive: a text-to-text transformer model for biomedical literature Long Phan J. Anibal H. Tran Shaurya Chanana Erol Bahadroglu Alec Peltekian G. Altan-Bonnet MedIm 49 151 0 28 May 2021
An End-to-end Model for Entity-level Relation Extraction using Multi-instance Learning Markus Eberts A. Ulges 57 63 0 11 Feb 2021
BioMegatron: Larger Biomedical Domain Language Model Hoo-Chang Shin Yang Zhang Evelina Bakhturina Raul Puri M. Patwary Mohammad Shoeybi Raghav Mani AI4CE 63 148 0 12 Oct 2020
Learning to summarize from human feedback Nisan Stiennon Long Ouyang Jeff Wu Daniel M. Ziegler Ryan J. Lowe Chelsea Voss Alec Radford Dario Amodei Paul Christiano ALM 259 2,184 0 02 Sep 2020
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Yu Gu Robert Tinn Hao Cheng Michael R. Lucas Naoto Usuyama Xiaodong Liu Tristan Naumann Jianfeng Gao Hoifung Poon LM&MA AI4CE 114 1,782 0 31 Jul 2020
Language Models are Few-Shot Learners Tom B. Brown Benjamin Mann Nick Ryder Melanie Subbiah Jared Kaplan ... Christopher Berner Sam McCandlish Alec Radford Ilya Sutskever Dario Amodei BDL 877 42,379 0 28 May 2020
Don't Stop Pretraining: Adapt Language Models to Domains and Tasks Suchin Gururangan Ana Marasović Swabha Swayamdipta Kyle Lo Iz Beltagy Doug Downey Noah A. Smith VLM AI4CE CLL 164 2,435 0 23 Apr 2020
Exploiting Cloze Questions for Few Shot Text Classification and Natural Language Inference Timo Schick Hinrich Schütze 348 1,617 0 21 Jan 2020
CopyMTL: Copy Mechanism for Joint Extraction of Entities and Relations with Multi-Task Learning Daojian Zeng Haoran Zhang Qianying Liu 56 190 0 24 Nov 2019
Effective Modeling of Encoder-Decoder Architecture for Joint Entity and Relation Extraction Tapas Nayak Hwee Tou Ng 3DV 70 234 0 22 Nov 2019
BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension M. Lewis Yinhan Liu Naman Goyal Marjan Ghazvininejad Abdel-rahman Mohamed Omer Levy Veselin Stoyanov Luke Zettlemoyer AIMat VLM 264 10,851 0 29 Oct 2019
Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer Colin Raffel Noam M. Shazeer Adam Roberts Katherine Lee Sharan Narang Michael Matena Yanqi Zhou Wei Li Peter J. Liu AIMat 475 20,317 0 23 Oct 2019
Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism Mohammad Shoeybi M. Patwary Raul Puri P. LeGresley Jared Casper Bryan Catanzaro MoE 334 1,917 0 17 Sep 2019
Span-based Joint Entity and Relation Extraction with Transformer Pre-training Markus Eberts A. Ulges LRM ViT 212 386 0 17 Sep 2019
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets Yifan Peng Shankai Yan Zhiyong Lu LM&MA AI4MH 71 845 0 13 Jun 2019
Publicly Available Clinical BERT Embeddings Emily Alsentzer John R. Murphy Willie Boag W. Weng Di Jin Tristan Naumann Matthew B. A. McDermott AI4MH 174 1,983 0 06 Apr 2019
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Jinhyuk Lee Wonjin Yoon Sungdong Kim Donghyeon Kim Sunkyu Kim Chan Ho So Jaewoo Kang OOD 178 5,672 0 25 Jan 2019
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding Jacob Devlin Ming-Wei Chang Kenton Lee Kristina Toutanova VLM SSL SSeg 1.8K 95,175 0 11 Oct 2018
Deep reinforcement learning from human preferences Paul Christiano Jan Leike Tom B. Brown Miljan Martic Shane Legg Dario Amodei 218 3,365 0 12 Jun 2017