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PepHarmony: A Multi-View Contrastive Learning Framework for Integrated
  Sequence and Structure-Based Peptide Encoding

PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding

21 January 2024
Ruochi Zhang
Haoran Wu
Chang Liu
Hua-Wang Li
Yuqian Wu
Kewei Li
Yifan Wang
Yifan Deng
Jiahui Chen
Fengfeng Zhou
Xin Gao
    AI4TS
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Papers citing "PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding"

14 / 14 papers shown
Title
PeptideBERT: A Language Model based on Transformers for Peptide Property
  Prediction
PeptideBERT: A Language Model based on Transformers for Peptide Property Prediction
Chakradhar Guntuboina
Adrita Das
P. Mollaei
Seongwon Kim
A. Farimani
10
37
0
28 Aug 2023
Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion
  Trajectory Prediction
Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction
Zuobai Zhang
Minghao Xu
A. Lozano
Vijil Chenthamarakshan
Payel Das
Jian Tang
DiffM
42
21
0
28 Jan 2023
Integration of Pre-trained Protein Language Models into Geometric Deep
  Learning Networks
Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networks
Fang Wu
Yujun Tao
Dragomir R. Radev
Jinbo Xu
Stan Z. Li
AI4CE
55
32
0
07 Dec 2022
Protein Representation Learning by Geometric Structure Pretraining
Protein Representation Learning by Geometric Structure Pretraining
Zuobai Zhang
Minghao Xu
Arian R. Jamasb
Vijil Chenthamarakshan
A. Lozano
Payel Das
Jian Tang
SSL
30
223
0
11 Mar 2022
Pre-training Molecular Graph Representation with 3D Geometry
Pre-training Molecular Graph Representation with 3D Geometry
Shengchao Liu
Hanchen Wang
Weiyang Liu
Joan Lasenby
Hongyu Guo
Jian Tang
152
312
0
07 Oct 2021
Exploring Simple Siamese Representation Learning
Exploring Simple Siamese Representation Learning
Xinlei Chen
Kaiming He
SSL
189
3,992
0
20 Nov 2020
Self-supervised Learning: Generative or Contrastive
Self-supervised Learning: Generative or Contrastive
Xiao Liu
Fanjin Zhang
Zhenyu Hou
Zhaoyu Wang
Li Mian
Jing Zhang
Jie Tang
SSL
99
1,604
0
15 Jun 2020
Understanding Contrastive Representation Learning through Alignment and
  Uniformity on the Hypersphere
Understanding Contrastive Representation Learning through Alignment and Uniformity on the Hypersphere
Tongzhou Wang
Phillip Isola
SSL
99
1,808
0
20 May 2020
Decision-Making with Auto-Encoding Variational Bayes
Decision-Making with Auto-Encoding Variational Bayes
Romain Lopez
Pierre Boyeau
Nir Yosef
Michael I. Jordan
Jeffrey Regier
BDL
212
10,591
0
17 Feb 2020
A Simple Framework for Contrastive Learning of Visual Representations
A Simple Framework for Contrastive Learning of Visual Representations
Ting-Li Chen
Simon Kornblith
Mohammad Norouzi
Geoffrey E. Hinton
SSL
255
18,607
0
13 Feb 2020
Graph Neural Networks: A Review of Methods and Applications
Graph Neural Networks: A Review of Methods and Applications
Jie Zhou
Ganqu Cui
Shengding Hu
Zhengyan Zhang
Cheng Yang
Zhiyuan Liu
Lifeng Wang
Changcheng Li
Maosong Sun
AI4CE
GNN
565
5,457
0
20 Dec 2018
BERT: Pre-training of Deep Bidirectional Transformers for Language
  Understanding
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding
Jacob Devlin
Ming-Wei Chang
Kenton Lee
Kristina Toutanova
VLM
SSL
SSeg
961
93,936
0
11 Oct 2018
Representation Learning with Contrastive Predictive Coding
Representation Learning with Contrastive Predictive Coding
Aaron van den Oord
Yazhe Li
Oriol Vinyals
DRL
SSL
229
10,152
0
10 Jul 2018
Modeling Relational Data with Graph Convolutional Networks
Modeling Relational Data with Graph Convolutional Networks
Michael Schlichtkrull
Thomas Kipf
Peter Bloem
Rianne van den Berg
Ivan Titov
Max Welling
GNN
147
4,772
0
17 Mar 2017
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