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2401.11360
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PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding
21 January 2024
Ruochi Zhang
Haoran Wu
Chang Liu
Hua-Wang Li
Yuqian Wu
Kewei Li
Yifan Wang
Yifan Deng
Jiahui Chen
Fengfeng Zhou
Xin Gao
AI4TS
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Papers citing
"PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding"
14 / 14 papers shown
Title
PeptideBERT: A Language Model based on Transformers for Peptide Property Prediction
Chakradhar Guntuboina
Adrita Das
P. Mollaei
Seongwon Kim
A. Farimani
10
37
0
28 Aug 2023
Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction
Zuobai Zhang
Minghao Xu
A. Lozano
Vijil Chenthamarakshan
Payel Das
Jian Tang
DiffM
42
21
0
28 Jan 2023
Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networks
Fang Wu
Yujun Tao
Dragomir R. Radev
Jinbo Xu
Stan Z. Li
AI4CE
55
32
0
07 Dec 2022
Protein Representation Learning by Geometric Structure Pretraining
Zuobai Zhang
Minghao Xu
Arian R. Jamasb
Vijil Chenthamarakshan
A. Lozano
Payel Das
Jian Tang
SSL
30
223
0
11 Mar 2022
Pre-training Molecular Graph Representation with 3D Geometry
Shengchao Liu
Hanchen Wang
Weiyang Liu
Joan Lasenby
Hongyu Guo
Jian Tang
152
312
0
07 Oct 2021
Exploring Simple Siamese Representation Learning
Xinlei Chen
Kaiming He
SSL
189
3,992
0
20 Nov 2020
Self-supervised Learning: Generative or Contrastive
Xiao Liu
Fanjin Zhang
Zhenyu Hou
Zhaoyu Wang
Li Mian
Jing Zhang
Jie Tang
SSL
99
1,604
0
15 Jun 2020
Understanding Contrastive Representation Learning through Alignment and Uniformity on the Hypersphere
Tongzhou Wang
Phillip Isola
SSL
99
1,808
0
20 May 2020
Decision-Making with Auto-Encoding Variational Bayes
Romain Lopez
Pierre Boyeau
Nir Yosef
Michael I. Jordan
Jeffrey Regier
BDL
212
10,591
0
17 Feb 2020
A Simple Framework for Contrastive Learning of Visual Representations
Ting-Li Chen
Simon Kornblith
Mohammad Norouzi
Geoffrey E. Hinton
SSL
255
18,607
0
13 Feb 2020
Graph Neural Networks: A Review of Methods and Applications
Jie Zhou
Ganqu Cui
Shengding Hu
Zhengyan Zhang
Cheng Yang
Zhiyuan Liu
Lifeng Wang
Changcheng Li
Maosong Sun
AI4CE
GNN
565
5,457
0
20 Dec 2018
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding
Jacob Devlin
Ming-Wei Chang
Kenton Lee
Kristina Toutanova
VLM
SSL
SSeg
961
93,936
0
11 Oct 2018
Representation Learning with Contrastive Predictive Coding
Aaron van den Oord
Yazhe Li
Oriol Vinyals
DRL
SSL
229
10,152
0
10 Jul 2018
Modeling Relational Data with Graph Convolutional Networks
Michael Schlichtkrull
Thomas Kipf
Peter Bloem
Rianne van den Berg
Ivan Titov
Max Welling
GNN
147
4,772
0
17 Mar 2017
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