InstructProtein: Aligning Human and Protein Language via Knowledge Instruction

5 October 2023

Huajun Chen

Papers citing "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction"

21 / 21 papers shown

Title
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models Zicheng Ma Chuanliu Fan Zhicong Wang Zhenyu Chen Xiaohan Lin Yongqian Li Shihao Feng Jun Zhang Ziqiang Cao Y. Gao 45 0 0 11 Mar 2025
Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting Jiyue Jiang Pengan Chen J. T. Wang Dongchen He Ziqin Wei ... Yimin Fan Xiangyu Shi Jiashuo Sun Chuan Wu Y. Li LM&MA 50 0 0 06 Mar 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu-Jie Zhang James Zou Yizhou Sun Wei Wang LM&MA AI4CE 64 3 0 21 Feb 2025
Controllable Protein Sequence Generation with LLM Preference Optimization Xiangyu Liu Yi Liu Silei Chen Wei Hu 36 0 0 28 Jan 2025
Can linguists better understand DNA? Wang Liang 87 1 0 20 Jan 2025
RNA-GPT: Multimodal Generative System for RNA Sequence Understanding Yijia Xiao Edward Sun Yiqiao Jin Luu Anh Tuan LM&MA 25 3 0 29 Oct 2024
InstructBioMol: Advancing Biomolecule Understanding and Design Following Human Instructions Xiang Zhuang Keyan Ding Tianwen Lyu Yinuo Jiang Xiaotong Li ... Ming Qin Kehua Feng Jike Wang Qiang Zhang Huajun Chen 33 3 0 10 Oct 2024
Structure-Enhanced Protein Instruction Tuning: Towards General-Purpose Protein Understanding Wei Yu Wu Chao Wang Liyi Chen Mingze Yin Yiheng Zhu Kun Fu Jieping Ye Hui Xiong Zheng Wang 30 1 0 04 Oct 2024
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding Yijia Xiao Edward Sun Yiqiao Jin Qifan Wang Wei Wang 47 10 0 21 Aug 2024
PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomes He Cao Yanjun Shao Zhiyuan Liu Zijing Liu Xiangru Tang Yuan Yao Yu Li AI4CE 35 5 0 19 Jun 2024
Bridging Text and Molecule: A Survey on Multimodal Frameworks for Molecule Yi Xiao Xiangxin Zhou Qiang Liu Liang Wang AI4CE 32 3 0 07 Mar 2024
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey Qizhi Pei Lijun Wu Kaiyuan Gao Jinhua Zhu Yue Wang Zun Wang Tao Qin Rui Yan AI4CE 54 19 0 03 Mar 2024
ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training Le Zhuo Zewen Chi Minghao Xu Heyan Huang Heqi Zheng Conghui He Xian-Ling Mao Wentao Zhang 85 11 0 28 Feb 2024
Generative AI for Controllable Protein Sequence Design: A Survey Yiheng Zhu Zitai Kong Jialun Wu Weize Liu Yuqiang Han Mingze Yin Hongxia Xu Chang-Yu Hsieh Tingjun Hou AI4CE 37 6 0 16 Feb 2024
Large Knowledge Model: Perspectives and Challenges Huajun Chen KELM 53 9 0 05 Dec 2023
DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking Gabriele Corso Hannes Stärk Bowen Jing Regina Barzilay Tommi Jaakkola DiffM 139 410 0 04 Oct 2022
Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval Pascal Notin M. Dias J. Frazer Javier Marchena-Hurtado Aidan N. Gomez D. Marks Y. Gal 55 177 0 27 May 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 319 11,953 0 04 Mar 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models Jason W. Wei Xuezhi Wang Dale Schuurmans Maarten Bosma Brian Ichter F. Xia Ed H. Chi Quoc Le Denny Zhou LM&Ro LRM AI4CE ReLM 379 8,495 0 28 Jan 2022
Multitask Prompted Training Enables Zero-Shot Task Generalization Victor Sanh Albert Webson Colin Raffel Stephen H. Bach Lintang Sutawika ... T. Bers Stella Biderman Leo Gao Thomas Wolf Alexander M. Rush LRM 213 1,657 0 15 Oct 2021
K-BERT: Enabling Language Representation with Knowledge Graph Weijie Liu Peng Zhou Zhe Zhao Zhiruo Wang Qi Ju Haotang Deng Ping Wang 231 778 0 17 Sep 2019