Evaluation of large language models for discovery of gene set function

Evaluation of large language models for discovery of gene set function

7 September 2023

Rudolf T. Pillich

Robin Bachelder

Papers citing "Evaluation of large language models for discovery of gene set function"

10 / 10 papers shown

Title
scDrugMap: Benchmarking Large Foundation Models for Drug Response Prediction Qing Wang Yining Pan M. Zhou Zijia Tang Yanfei Wang Guangyu Wang Qianqian Song 24 0 0 08 May 2025
GPTON: Generative Pre-trained Transformers enhanced with Ontology Narration for accurate annotation of biological data Rongbin Li Wenbo Chen Jinbo Li Hanwen Xing Hua Xu Zhao Li W. Zheng LM&MA 13 0 0 12 Oct 2024
BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments Yusuf Roohani Jian Vora Qian Huang Zach Steinhart Alex Marson Percy Liang J. Leskovec Percy Liang Jure Leskovec LLMAG LM&Ro 49 13 0 27 May 2024
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases Zhizheng Wang Qiao Jin Chih-Hsuan Wei Shubo Tian Po-Ting Lai Qingqing Zhu Chi-Ping Day Christina Ross Zhiyong Lu LLMAG 32 8 0 25 May 2024
Metacognitive Capabilities of LLMs: An Exploration in Mathematical Problem Solving Aniket Didolkar Anirudh Goyal Nan Rosemary Ke Siyuan Guo Michal Valko Timothy Lillicrap Danilo Jimenez Rezende Yoshua Bengio Michael C. Mozer Sanjeev Arora LRM 36 22 0 20 May 2024
Thought Graph: Generating Thought Process for Biological Reasoning Chi-Yang Hsu K. Cox Jiawei Xu Zhen Tan Tianhua Zhai Mengzhou Hu Dexter Pratt Tianlong Chen Ziniu Hu Ying Ding AI4CE 35 5 0 11 Mar 2024
Gene Set Summarization using Large Language Models marcin p. joachimiak J. H. Caufield N. Harris Hyeongsik Kim Christopher J. Mungall 29 18 0 21 May 2023
An automatically discovered chain-of-thought prompt generalizes to novel models and datasets Konstantin Hebenstreit Robert Praas Louis P. Kiesewetter Matthias Samwald LLMAG LRM AI4CE ReLM 68 10 0 04 May 2023
ReAct: Synergizing Reasoning and Acting in Language Models Shunyu Yao Jeffrey Zhao Dian Yu Nan Du Izhak Shafran Karthik Narasimhan Yuan Cao LLMAG ReLM LRM 267 2,510 0 06 Oct 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models Jason W. Wei Xuezhi Wang Dale Schuurmans Maarten Bosma Brian Ichter F. Xia Ed H. Chi Quoc Le Denny Zhou LM&Ro LRM AI4CE ReLM 395 8,559 0 28 Jan 2022