Str2Str: A Score-based Framework for Zero-shot Protein Conformation
Sampling

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Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling

5 June 2023

Jian Tang

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Papers citing "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling"

12 / 12 papers shown

Title
PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models Fanmeng Wang Wentao Guo Qi Ou Hongshuai Wang Haitao Lin Hongteng Xu Zhifeng Gao AI4CE 100 2 0 11 Apr 2025
Structure Language Models for Protein Conformation Generation Jiarui Lu Xiaoyin Chen Stephen Zhewen Lu Chence Shi Hongyu Guo Yoshua Bengio Xiangbo Shu DiffM 93 5 0 24 Oct 2024
Enhanced Sampling with Machine Learning: A Review S. Mehdi Zachary Smith Lukas Herron Ziyue Zou P. Tiwary AI4CE 43 8 0 15 Jun 2023
Protein Sequence and Structure Co-Design with Equivariant Translation Chence Shi Chuanrui Wang Jiarui Lu Bozitao Zhong Jian Tang DiffM 59 48 0 17 Oct 2022
Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem Brian L. Trippe Jason Yim D. Tischer D. Baker Tamara Broderick Regina Barzilay Tommi Jaakkola DiffM 86 240 0 08 Jun 2022
Torsional Diffusion for Molecular Conformer Generation Bowen Jing Gabriele Corso Jeffrey Chang Regina Barzilay Tommi Jaakkola DiffM BDL 103 273 0 01 Jun 2022
Deeptime: a Python library for machine learning dynamical models from time series data Moritz Hoffmann Martin K. Scherer Tim Hempel Andreas Mardt Brian M. de Silva ... Stefan Klus Hao Wu N. Kutz Steven L. Brunton Frank Noé AI4CE 86 106 0 28 Oct 2021
Score-Based Generative Modeling through Stochastic Differential Equations Yang Song Jascha Narain Sohl-Dickstein Diederik P. Kingma Abhishek Kumar Stefano Ermon Ben Poole DiffM SyDa 385 6,586 0 26 Nov 2020
Machine Learning of coarse-grained Molecular Dynamics Force Fields Jiang Wang Simon Olsson C. Wehmeyer Adria Pérez Nicholas E. Charron Gianni De Fabritiis Frank Noe C. Clementi AI4CE 52 406 0 04 Dec 2018
Self-Attention with Relative Position Representations Peter Shaw Jakob Uszkoreit Ashish Vaswani 184 2,304 0 06 Mar 2018
Variational Inference with Normalizing Flows Danilo Jimenez Rezende S. Mohamed DRL BDL 322 4,198 0 21 May 2015
NICE: Non-linear Independent Components Estimation Laurent Dinh David M. Krueger Yoshua Bengio DRL BDL 131 2,269 0 30 Oct 2014