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MONAI: An open-source framework for deep learning in healthcare

MONAI: An open-source framework for deep learning in healthcare

4 November 2022
M. Jorge Cardoso
Wenqi Li
Richard Brown
Nic Ma
E. Kerfoot
Yiheng Wang
Benjamin Murrey
Andriy Myronenko
Can Zhao
Dong Yang
V. Nath
Yufan He
Ziyue Xu
Ali Hatamizadeh
Andriy Myronenko
Wenjie Zhu
Yun-Hui Liu
Mingxin Zheng
Yucheng Tang
Isaac Yang
Michael Zephyr
Behrooz Hashemian
Sachidanand Alle
Mohammad Zalbagi Darestani
Charlie Budd
Marc Modat
Tom Vercauteren
Guotai Wang
Yiwen Li
Yipeng Hu
Yunguan Fu
Benjamin L. Gorman
Hans J. Johnson
Brad W. Genereaux
B. S. Erdal
Vikash Gupta
A. Diaz-Pinto
Andre Dourson
Lena Maier-Hein
Paul F. Jaeger
Michael Baumgartner
Jayashree Kalpathy-Cramer
Mona G. Flores
J. Kirby
L. Cooper
H. Roth
Daguang Xu
David Bericat
R. Floca
S. Kevin Zhou
Haris Shuaib
Keyvan Farahani
Klaus H. Maier-Hein
S. Aylward
Prerna Dogra
Sebastien Ourselin
Andrew Feng
ArXiv (abs)PDFHTML

Papers citing "MONAI: An open-source framework for deep learning in healthcare"

50 / 203 papers shown
Title
The Unreasonable Effectiveness of Guidance for Diffusion Models
The Unreasonable Effectiveness of Guidance for Diffusion Models
Tim Kaiser
Nikolas Adaloglou
M. Kollmann
DiffM
128
1
0
15 Nov 2024
DRIFTS: Optimizing Domain Randomization with Synthetic Data and Weight Interpolation for Fetal Brain Tissue Segmentation
DRIFTS: Optimizing Domain Randomization with Synthetic Data and Weight Interpolation for Fetal Brain Tissue Segmentation
Vladyslav Zalevskyi
Thomas Sanchez
Margaux Roulet
Hélène Lajous
Jordina Aviles Verdera
...
Georg Langs
Gregor Kasprian
Jana Hutter
Hamza Kebiri
Meritxell Bach Cuadra
OOD
128
1
0
11 Nov 2024
Enhancing Trust in Clinically Significant Prostate Cancer Prediction
  with Multiple Magnetic Resonance Imaging Modalities
Enhancing Trust in Clinically Significant Prostate Cancer Prediction with Multiple Magnetic Resonance Imaging Modalities
Benjamin Ng
Chi-en Amy Tai
E. Z. Zeng
Alexander Wong
39
0
0
07 Nov 2024
Counterfactual MRI Data Augmentation using Conditional Denoising
  Diffusion Generative Models
Counterfactual MRI Data Augmentation using Conditional Denoising Diffusion Generative Models
Pedro Morão
J. Santinha
Yasna Forghani
N. Loução
Pedro Gouveia
Mário A. T. Figueiredo
DiffMMedIm
77
0
0
31 Oct 2024
Variable Resolution Sampling and Deep Learning Image Recovery for
  Accelerated Multi-Spectral MRI Near Metal Implants
Variable Resolution Sampling and Deep Learning Image Recovery for Accelerated Multi-Spectral MRI Near Metal Implants
Azadeh Sharafi
Nikolai J. Mickevicius
Mehran Baboli
A. Nencka
Kevin M. Koch
37
0
0
30 Oct 2024
KA$^2$ER: Knowledge Adaptive Amalgamation of ExpeRts for Medical Images
  Segmentation
KA2^22ER: Knowledge Adaptive Amalgamation of ExpeRts for Medical Images Segmentation
Shangde Gao
Yichao Fu
Ke Liu
Hongxia Xu
Jian Wu
MedIm
110
1
0
28 Oct 2024
Every Component Counts: Rethinking the Measure of Success for Medical
  Semantic Segmentation in Multi-Instance Segmentation Tasks
Every Component Counts: Rethinking the Measure of Success for Medical Semantic Segmentation in Multi-Instance Segmentation Tasks
A. Jaus
C. Seibold
Simon Reiß
Zdravko Marinov
Keyi Li
Zeling Ye
Stefan Krieg
Jens Kleesiek
Rainer Stiefelhagen
44
0
0
24 Oct 2024
SAMReg: SAM-enabled Image Registration with ROI-based Correspondence
SAMReg: SAM-enabled Image Registration with ROI-based Correspondence
Shiqi Huang
Tingfa Xu
Z. Shen
Shaheer U. Saeed
Wen Yan
D. Barratt
Yipeng Hu
62
1
0
17 Oct 2024
VividMed: Vision Language Model with Versatile Visual Grounding for
  Medicine
VividMed: Vision Language Model with Versatile Visual Grounding for Medicine
Lingxiao Luo
Bingda Tang
Xuanzhong Chen
Rong Han
Ting Chen
VLM
88
3
0
16 Oct 2024
Large-Scale 3D Medical Image Pre-training with Geometric Context Priors
Large-Scale 3D Medical Image Pre-training with Geometric Context Priors
Linshan Wu
Jiaxin Zhuang
Hao Chen
90
6
0
13 Oct 2024
Few Exemplar-Based General Medical Image Segmentation via Domain-Aware
  Selective Adaptation
Few Exemplar-Based General Medical Image Segmentation via Domain-Aware Selective Adaptation
Chen Xu
Qiming Huang
Yuqi Hou
Jiangxing Wu
Fan Zhang
Hyung Jin Chang
Jianbo Jiao
35
0
0
11 Oct 2024
Federated brain tumor segmentation: an extensive benchmark
Federated brain tumor segmentation: an extensive benchmark
Matthis Manthe
Stefan Duffner
Carole Lartizien
OODFedML
92
5
0
07 Oct 2024
Metrics Revolutions: Groundbreaking Insights into the Implementation of
  Metrics for Biomedical Image Segmentation
Metrics Revolutions: Groundbreaking Insights into the Implementation of Metrics for Biomedical Image Segmentation
Gašper Podobnik
Tomaž Vrtovec
50
1
0
03 Oct 2024
Domain Aware Multi-Task Pretraining of 3D Swin Transformer for
  T1-weighted Brain MRI
Domain Aware Multi-Task Pretraining of 3D Swin Transformer for T1-weighted Brain MRI
Jonghun Kim
Mansu Kim
Hyunjin Park
MedImViT
54
0
0
01 Oct 2024
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical
  Imaging
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical Imaging
Sarthak Pati
Szymon Mazurek
Spyridon Bakas
MedIm
47
0
0
30 Sep 2024
BGDB: Bernoulli-Gaussian Decision Block with Improved Denoising
  Diffusion Probabilistic Models
BGDB: Bernoulli-Gaussian Decision Block with Improved Denoising Diffusion Probabilistic Models
Chengkun Sun
Jinqian Pan
Russell Stevens Terry
Jiang Bian
Jie Xu
DiffM
55
1
0
19 Sep 2024
Multi-Domain Data Aggregation for Axon and Myelin Segmentation in
  Histology Images
Multi-Domain Data Aggregation for Axon and Myelin Segmentation in Histology Images
Armand Collin
Arthur Boschet
Mathieu Boudreau
Julien Cohen-Adad
82
0
0
17 Sep 2024
Enhanced segmentation of femoral bone metastasis in CT scans of patients
  using synthetic data generation with 3D diffusion models
Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models
Emile Saillard
Aurélie Levillain
David Mitton
Jean-Baptiste Pialat
C. Confavreux
H. Follet
Thomas Grenier
MedIm
32
0
0
17 Sep 2024
AutoPET Challenge III: Testing the Robustness of Generalized Dice Focal
  Loss trained 3D Residual UNet for FDG and PSMA Lesion Segmentation from
  Whole-Body PET/CT Images
AutoPET Challenge III: Testing the Robustness of Generalized Dice Focal Loss trained 3D Residual UNet for FDG and PSMA Lesion Segmentation from Whole-Body PET/CT Images
Shadab Ahamed
3DPCMedIm
91
0
0
16 Sep 2024
SAM-OCTA2: Layer Sequence OCTA Segmentation with Fine-tuned Segment
  Anything Model 2
SAM-OCTA2: Layer Sequence OCTA Segmentation with Fine-tuned Segment Anything Model 2
Xinrun Chen
Chengliang Wang
Haojian Ning
Mengzhan Zhang
Mei Shen
Shiying Li
56
2
0
14 Sep 2024
MAISI: Medical AI for Synthetic Imaging
MAISI: Medical AI for Synthetic Imaging
Pengfei Guo
Can Zhao
Dong Yang
Ziyue Xu
Vishwesh Nath
...
Benjamin D. Simon
Mason J Belue
Stephanie Harmon
Baris Turkbey
Daguang Xu
DiffMMedIm
77
25
0
13 Sep 2024
Interactive 3D Segmentation for Primary Gross Tumor Volume in
  Oropharyngeal Cancer
Interactive 3D Segmentation for Primary Gross Tumor Volume in Oropharyngeal Cancer
Mikko Saukkoriipi
J. Sahlsten
J. Jaskari
Lotta Orasmaa
J. Kangas
...
A. Makitie
Mohamed Naser
Clifton Fuller
Benjamin H. Kann
K. Kaski
61
2
0
10 Sep 2024
Enhancing Cross-Modality Synthesis: Subvolume Merging for MRI-to-CT
  Conversion
Enhancing Cross-Modality Synthesis: Subvolume Merging for MRI-to-CT Conversion
Fuxin Fan
Jingna Qiu
Yixing Huang
Andreas Maier
29
0
0
09 Sep 2024
Influence of Early through Late Fusion on Pancreas Segmentation from
  Imperfectly Registered Multimodal MRI
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI
Lucas W. Remedios
Han Liu
Samuel W. Remedios
Lianrui Zuo
Adam M. Saunders
Shunxing Bao
Yuankai Huo
Alvin C. Powers
John Virostko
Bennett A. Landman
56
0
0
06 Sep 2024
SeCo-INR: Semantically Conditioned Implicit Neural Representations for
  Improved Medical Image Super-Resolution
SeCo-INR: Semantically Conditioned Implicit Neural Representations for Improved Medical Image Super-Resolution
Mevan Ekanayake
Zhifeng Chen
Gary Egan
Mehrtash Harandi
Zhiwen Chen
SupR
60
0
0
02 Sep 2024
McCaD: Multi-Contrast MRI Conditioned, Adaptive Adversarial Diffusion
  Model for High-Fidelity MRI Synthesis
McCaD: Multi-Contrast MRI Conditioned, Adaptive Adversarial Diffusion Model for High-Fidelity MRI Synthesis
Sanuwani Dayarathna
Kh Tohidul Islam
Bohan Zhuang
Guang Yang
Jianfei Cai
Meng Law
Zhaolin Chen
DiffMMedIm
79
0
0
01 Sep 2024
Auxiliary Input in Training: Incorporating Catheter Features into Deep
  Learning Models for ECG-Free Dynamic Coronary Roadmapping
Auxiliary Input in Training: Incorporating Catheter Features into Deep Learning Models for ECG-Free Dynamic Coronary Roadmapping
Yikang Liu
Lin Zhao
Eric Z. Chen
Xiao Chen
Terrence Chen
Shanhui Sun
MedIm
83
0
0
28 Aug 2024
Automatic 8-tissue Segmentation for 6-month Infant Brains
Automatic 8-tissue Segmentation for 6-month Infant Brains
Yilan Dong
V. Kyriakopoulou
I. Grigorescu
G. McAlonan
D. Batalle
Maria Deprez
35
0
0
27 Aug 2024
A Short Review and Evaluation of SAM2's Performance in 3D CT Image
  Segmentation
A Short Review and Evaluation of SAM2's Performance in 3D CT Image Segmentation
Yufan He
Pengfei Guo
Yucheng Tang
Andriy Myronenko
Vishwesh Nath
Ziyue Xu
Dong Yang
Can Zhao
Daguang Xu
Wenqi Li
54
5
0
20 Aug 2024
Unpaired Volumetric Harmonization of Brain MRI with Conditional Latent
  Diffusion
Unpaired Volumetric Harmonization of Brain MRI with Conditional Latent Diffusion
Mengqi Wu
Minhui Yu
Shuaiming Jing
P. Yap
Zhengwu Zhang
Mingxia Liu
DiffMMedIm
84
0
0
18 Aug 2024
Geo-UNet: A Geometrically Constrained Neural Framework for
  Clinical-Grade Lumen Segmentation in Intravascular Ultrasound
Geo-UNet: A Geometrically Constrained Neural Framework for Clinical-Grade Lumen Segmentation in Intravascular Ultrasound
Yiming Chen
N. S. D'Souza
Akshith Mandepally
Patrick Henninger
Satyananda Kashyap
...
Marcos Zachary
Raed Rizq
Paul Chouinard
Polina Golland
Tanveer Syeda-Mahmood
41
0
0
09 Aug 2024
StoDIP: Efficient 3D MRF image reconstruction with deep image priors and
  stochastic iterations
StoDIP: Efficient 3D MRF image reconstruction with deep image priors and stochastic iterations
Perla Mayo
Matteo Cencini
Carolin M. Pirkl
Marion I. Menzel
M. Tosetti
Bjoern Menze
Mohammad Golbabaee
57
1
0
05 Aug 2024
Knowledge-Guided Prompt Learning for Lifespan Brain MR Image
  Segmentation
Knowledge-Guided Prompt Learning for Lifespan Brain MR Image Segmentation
Shiyuan Chen
Zihao Zhao
Jiawei Huang
Yingfeng Cai
Runqi Meng
Wei Sui
Dinggang Shen
VLM
52
3
0
31 Jul 2024
Yucca: A Deep Learning Framework For Medical Image Analysis
Yucca: A Deep Learning Framework For Medical Image Analysis
S. Llambias
Julia Machnio
Asbjorn Munk
Jakob Ambsdorf
Mads Nielsen
Mostafa Mehdipour-Ghazi
MedIm
63
3
0
29 Jul 2024
Aggregated Attributions for Explanatory Analysis of 3D Segmentation
  Models
Aggregated Attributions for Explanatory Analysis of 3D Segmentation Models
Maciej Chrabaszcz
Hubert Baniecki
Piotr Komorowski
Szymon Płotka
Przemysław Biecek
63
2
0
23 Jul 2024
STS MICCAI 2023 Challenge: Grand challenge on 2D and 3D semi-supervised
  tooth segmentation
STS MICCAI 2023 Challenge: Grand challenge on 2D and 3D semi-supervised tooth segmentation
Yaqi Wang
Yifan Zhang
Xiaodiao Chen
Shuai Wang
Dahong Qian
...
Yuanlin Li
Bing Wang
Chunshi Wang
Qiupu Chen
Mingqian Li
3DV
69
2
0
18 Jul 2024
Thyroidiomics: An Automated Pipeline for Segmentation and Classification
  of Thyroid Pathologies from Scintigraphy Images
Thyroidiomics: An Automated Pipeline for Segmentation and Classification of Thyroid Pathologies from Scintigraphy Images
Maziar Sabouri
Shadab Ahamed
Azin Asadzadeh
Atlas Haddadi Avval
S. Bagheri
...
F. Yousefirizi
Carlos F. Uribe
G. Hajianfar
Habib Zaidi
Arman Rahmim
50
0
0
14 Jul 2024
Swin SMT: Global Sequential Modeling in 3D Medical Image Segmentation
Swin SMT: Global Sequential Modeling in 3D Medical Image Segmentation
Szymon Płotka
Maciej Chrabaszcz
Przemyslaw Biecek
57
2
0
10 Jul 2024
Robustness Testing of Black-Box Models Against CT Degradation Through
  Test-Time Augmentation
Robustness Testing of Black-Box Models Against CT Degradation Through Test-Time Augmentation
Jack Highton
Quok Zong Chong
Samuel Finestone
A. Beqiri
Julia A. Schnabel
K. Bhatia
OOD
70
1
0
27 Jun 2024
SLOctolyzer: Fully automatic analysis toolkit for segmentation and
  feature extracting in scanning laser ophthalmoscopy images
SLOctolyzer: Fully automatic analysis toolkit for segmentation and feature extracting in scanning laser ophthalmoscopy images
Jamie Burke
Samuel Gibbon
Justin Engelmann
Adam Threlfall
Ylenia Giarratano
Charlene Hamid
Stuart King
Ian J. C. MacCormick
Tom J. MacGillivray
31
3
0
24 Jun 2024
Learned Image Compression for HE-stained Histopathological Images via
  Stain Deconvolution
Learned Image Compression for HE-stained Histopathological Images via Stain Deconvolution
Maximilian Fischer
Peter Neher
Tassilo Wald
S. D. Almeida
Shuhan Xiao
...
Michael Götz
Alexander Muckenhuber
Jens Kleesiek
Marco Nolden
Klaus H. Maier-Hein
32
3
0
18 Jun 2024
Cyclic 2.5D Perceptual Loss for Cross-Modal 3D Medical Image Synthesis: T1w MRI to Tau PET
Cyclic 2.5D Perceptual Loss for Cross-Modal 3D Medical Image Synthesis: T1w MRI to Tau PET
Symac Kim
Junho Moon
Haejun Chung
Ikbeom Jang
MedIm
76
0
0
18 Jun 2024
Unveiling Incomplete Modality Brain Tumor Segmentation: Leveraging
  Masked Predicted Auto-Encoder and Divergence Learning
Unveiling Incomplete Modality Brain Tumor Segmentation: Leveraging Masked Predicted Auto-Encoder and Divergence Learning
Zhongao Sun
Jiameng Li
Yuhan Wang
Jiarong Cheng
Qing Zhou
Chun Li
MedIm
100
0
0
12 Jun 2024
EngineBench: Flow Reconstruction in the Transparent Combustion Chamber
  III Optical Engine
EngineBench: Flow Reconstruction in the Transparent Combustion Chamber III Optical Engine
Samuel J. Baker
Michael A. Hobley
Isabel Scherl
Xiaohang Fang
Felix C. P. Leach
M. Davy
AI4CE
66
0
0
05 Jun 2024
Comparative Benchmarking of Failure Detection Methods in Medical Image
  Segmentation: Unveiling the Role of Confidence Aggregation
Comparative Benchmarking of Failure Detection Methods in Medical Image Segmentation: Unveiling the Role of Confidence Aggregation
M. Zenk
David Zimmerer
Fabian Isensee
Jeremias Traub
T. Norajitra
Paul F. Jäger
Klaus H. Maier-Hein
93
4
0
05 Jun 2024
Enhancing predictive imaging biomarker discovery through treatment
  effect analysis
Enhancing predictive imaging biomarker discovery through treatment effect analysis
Shuhan Xiao
Lukas Klein
Jens Petersen
Philipp Vollmuth
Paul F. Jaeger
Klaus H. Maier-Hein
50
0
0
04 Jun 2024
Patch-Based Encoder-Decoder Architecture for Automatic Transmitted Light
  to Fluorescence Imaging Transition: Contribution to the LightMyCells
  Challenge
Patch-Based Encoder-Decoder Architecture for Automatic Transmitted Light to Fluorescence Imaging Transition: Contribution to the LightMyCells Challenge
Marek Wodzinski
Henning Muller
40
1
0
03 Jun 2024
SynthBA: Reliable Brain Age Estimation Across Multiple MRI Sequences and
  Resolutions
SynthBA: Reliable Brain Age Estimation Across Multiple MRI Sequences and Resolutions
Lemuel Puglisi
Alessia Rondinella
Linda De Meo
Francesco Guarnera
Sebastiano Battiato
Daniele Ravi
66
1
0
01 Jun 2024
QuST: QuPath Extension for Integrative Whole Slide Image and Spatial
  Transcriptomics Analysis
QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
Chao-Hui Huang
49
2
0
31 May 2024
Boosting Medical Image-based Cancer Detection via Text-guided
  Supervision from Reports
Boosting Medical Image-based Cancer Detection via Text-guided Supervision from Reports
Guangyu Guo
Jiawen Yao
Yingda Xia
Tony C. W. Mok
Zhilin Zheng
Junwei Han
Le Lu
Dingwen Zhang
Jian Zhou
Ling Zhang
66
1
0
23 May 2024
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