BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

19 October 2022

Papers citing "BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining"

50 / 320 papers shown

Title
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain Aryo Pradipta Gema Pasquale Minervini Luke Daines Tom Hope Beatrice Alex LM&MA ALM 36 40 0 06 Jul 2023
SMILE: Evaluation and Domain Adaptation for Social Media Language Understanding Vasilisa Bashlovkina Riley Matthews Zhaobin Kuang Simon Baumgartner Michael Bendersky 38 4 0 30 Jun 2023
Transformers in Healthcare: A Survey Subhash Nerella S. Bandyopadhyay Jiaqing Zhang Miguel Contreras Scott Siegel ... Jessica Sena B. Shickel A. Bihorac Kia Khezeli Parisa Rashidi MedIm AI4CE 21 25 0 30 Jun 2023
Biomedical Language Models are Robust to Sub-optimal Tokenization Bernal Jiménez Gutiérrez Huan Sun Yu-Chuan Su 22 6 0 30 Jun 2023
Prediction of COVID-19 Patients' Emergency Room Revisit using Multi-Source Transfer Learning Yuelyu Ji Yuhe Gao Runxue Bao Qi Li Di Liu Yiming Sun Ye Ye OOD 24 19 0 29 Jun 2023
OphGLM: Training an Ophthalmology Large Language-and-Vision Assistant based on Instructions and Dialogue Weihao Gao Zhuo Deng Zhiyuan Niu Fuju Rong Chucheng Chen ... Fangjun Li Zhenjie Cao Zhaoyi Ma Wenbin Wei Lan Ma LM&MA 21 33 0 21 Jun 2023
Building blocks for complex tasks: Robust generative event extraction for radiology reports under domain shifts Sitong Zhou Meliha Yetisgen Mari Ostendorf MedIm 23 2 0 15 Jun 2023
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health Shubo Tian Qiao Jin Lana Yeganova Po-Ting Lai Qingqing Zhu ... Donald C. Comeau R. Islamaj Aadit Kapoor Xin Gao Zhiyong Lu LM&MA MedIm AI4MH 109 210 0 15 Jun 2023
INT2.1: Towards Fine-Tunable Quantized Large Language Models with Error Correction through Low-Rank Adaptation Yuji Chai John Gkountouras Glenn G. Ko David Brooks Gu-Yeon Wei MQ 30 19 0 13 Jun 2023
CUED at ProbSum 2023: Hierarchical Ensemble of Summarization Models Potsawee Manakul Yassir Fathullah Adian Liusie Vyas Raina Vatsal Raina Mark J. F. Gales 29 12 0 08 Jun 2023
K2: A Foundation Language Model for Geoscience Knowledge Understanding and Utilization Cheng Deng Tianhang Zhang Zhongmou He Yi Xu Qiyuan Chen ... Weinan Zhang Xinbing Wang Cheng Zhou Zhouhan Lin Junxian He ALM 30 63 0 08 Jun 2023
FedSecurity: Benchmarking Attacks and Defenses in Federated Learning and Federated LLMs Shanshan Han Baturalp Buyukates Zijian Hu Han Jin Weizhao Jin ... Qifan Zhang Yuhui Zhang Carlee Joe-Wong Salman Avestimehr Chaoyang He SILM 31 12 0 08 Jun 2023
Evaluation of ChatGPT on Biomedical Tasks: A Zero-Shot Comparison with Fine-Tuned Generative Transformers Israt Jahan Md Tahmid Rahman Laskar Chun Peng J. Huang LM&MA MedIm AI4MH 43 30 0 07 Jun 2023
RadLing: Towards Efficient Radiology Report Understanding Rikhiya Ghosh Sanjeev Kumar Karn Manuela Danu Larisa Micu Ramya Vunikili Oladimeji Farri MedIm 29 6 0 04 Jun 2023
Utilizing ChatGPT to Enhance Clinical Trial Enrollment Georgios Peikos S. Symeonidis Pranav Kasela G. Pasi LM&MA 24 12 0 03 Jun 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day Chunyuan Li Cliff Wong Sheng Zhang Naoto Usuyama Haotian Liu Jianwei Yang Tristan Naumann Hoifung Poon Jianfeng Gao LM&MA MedIm 51 703 0 01 Jun 2023
Domain Specialization as the Key to Make Large Language Models Disruptive: A Comprehensive Survey Chen Ling Xujiang Zhao Jiaying Lu Chengyuan Deng Can Zheng ... Chris White Quanquan Gu Jian Pei Carl Yang Liang Zhao ALM 33 126 0 30 May 2023
A Systematic Study and Comprehensive Evaluation of ChatGPT on Benchmark Datasets Md Tahmid Rahman Laskar M Saiful Bari Mizanur Rahman Md Amran Hossen Bhuiyan Chenyu You J. Huang LM&MA ELM ALM 49 179 0 29 May 2023
Large Language Models, scientific knowledge and factuality: A systematic analysis in antibiotic discovery Magdalena Wysocka Oskar Wysocki Maxime Delmas V. Mutel André Freitas LM&MA 35 5 0 28 May 2023
Understanding Breast Cancer Survival: Using Causality and Language Models on Multi-omics Data Mugariya Farooq Shahad Hardan Aigerim Zhumbhayeva Yu Zheng Preslav Nakov Kun Zhang CML 22 1 0 28 May 2023
Knowledge-Augmented Reasoning Distillation for Small Language Models in Knowledge-Intensive Tasks Minki Kang Seanie Lee Jinheon Baek Kenji Kawaguchi Sung Ju Hwang ALM LRM 52 56 0 28 May 2023
BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks Kai Zhang Jun Yu Eashan Adhikarla Rong-Er Zhou Zhilin Yan ... Xun Chen Yong Chen Quanzheng Li Hongfang Liu Lichao Sun LM&MA MedIm 37 157 0 26 May 2023
Training Data Extraction From Pre-trained Language Models: A Survey Shotaro Ishihara 29 46 0 25 May 2023
HuatuoGPT, towards Taming Language Model to Be a Doctor Hongbo Zhang Junying Chen Feng Jiang Fei Yu Zhihong Chen ... Zhiyi Zhang Qingying Xiao Xiang Wan Benyou Wang Haizhou Li LM&MA AI4MH ELM 28 188 0 24 May 2023
Pre-training Multi-task Contrastive Learning Models for Scientific Literature Understanding Yu Zhang Hao Cheng Zhihong Shen Xiaodong Liu Yejiang Wang Jianfeng Gao 32 13 0 23 May 2023
A Study of Generative Large Language Model for Medical Research and Healthcare C.A.I. Peng Xi Yang Aokun Chen Kaleb E. Smith Nima M. Pournejatian ... W. Hogan E. Shenkman Yi Guo Jiang Bian Yonghui Wu LM&MA ELM AI4MH 155 244 0 22 May 2023
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance Karel DÓosterlinck François Remy Johannes Deleu Thomas Demeester Chris Develder Klim Zaporojets Aneiss Ghodsi Simon Ellershaw Jack R. Collins Christopher Potts 53 11 0 22 May 2023
GraphCare: Enhancing Healthcare Predictions with Personalized Knowledge Graphs Pengcheng Jiang Cao Xiao Adam Cross Jimeng Sun AI4MH 31 21 0 22 May 2023
Appraising the Potential Uses and Harms of LLMs for Medical Systematic Reviews Hye Sun Yun Iain J. Marshall T. Trikalinos Byron C. Wallace 24 16 0 19 May 2023
PlugMed: Improving Specificity in Patient-Centered Medical Dialogue Generation using In-Context Learning Chengfeng Dou Zhi Jin Wenpin Jiao Haiyan Zhao Zhengwei Tao Yongqiang Zhao LM&MA MedIm 28 7 0 19 May 2023
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records Jun Wen Jue Hou Clara-Lea Bonzel Yihan Zhao Victor Castro ... J. M. Gaziano K. Liao Junwei Lu Kelly Cho Tianxi Cai BDL 21 4 0 19 May 2023
MedBLIP: Bootstrapping Language-Image Pre-training from 3D Medical Images and Texts Qiuhui Chen Xinyue Hu Zirui Wang Yi Hong LM&MA MedIm 22 34 0 18 May 2023
MolXPT: Wrapping Molecules with Text for Generative Pre-training Zequn Liu Wei Zhang Yingce Xia Lijun Wu Shufang Xie Tao Qin M. Zhang Tie-Yan Liu 25 67 0 18 May 2023
BioAug: Conditional Generation based Data Augmentation for Low-Resource Biomedical NER Sreyan Ghosh Utkarsh Tyagi Sonal Kumar Dinesh Manocha MedIm 34 10 0 18 May 2023
Improving Small Language Models on PubMedQA via Generative Data Augmentation Zhen Guo Peiqi Wang Yanwei Wang Shangdi Yu LM&MA MedIm 18 10 0 12 May 2023
Are ChatGPT and GPT-4 General-Purpose Solvers for Financial Text Analytics? A Study on Several Typical Tasks Xianzhi Li Samuel Chan Xiaodan Zhu Yulong Pei Zhiqiang Ma Xiaomo Liu Sameena Shah AI4MH 32 75 0 10 May 2023
From Zero to Hero: Harnessing Transformers for Biomedical Named Entity Recognition in Zero- and Few-shot Contexts Milos Kosprdic Nikola Prodanović Adela Ljajić Bojana Bašaragin Nikola Milosevic MedIm 23 5 0 05 May 2023
PMC-LLaMA: Towards Building Open-source Language Models for Medicine Chaoyi Wu Weixiong Lin Xiaoman Zhang Ya Zhang Yanfeng Wang Weidi Xie LM&MA AI4MH 98 75 0 27 Apr 2023
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text K. D. Baksi Vatsala Pokhrel Bhusan K. Kuntal S. Mande 16 0 0 27 Apr 2023
The Closeness of In-Context Learning and Weight Shifting for Softmax Regression Shuai Li Zhao Song Yu Xia Tong Yu Dinesh Manocha 36 36 0 26 Apr 2023
Differentiate ChatGPT-generated and Human-written Medical Texts Wenxiong Liao Zheng Liu Haixing Dai Shaochen Xu Zihao Wu ... Xiaoke Huang Dajiang Zhu Hongmin Cai Tianming Liu Xiang Li LM&MA DeLMO MedIm AI4MH 26 55 0 23 Apr 2023
Auditing and Generating Synthetic Data with Controllable Trust Trade-offs Brian M. Belgodere Pierre L. Dognin Adam Ivankay Igor Melnyk Youssef Mroueh ... Mattia Rigotti Jerret Ross Yair Schiff Radhika Vedpathak Richard A. Young 32 12 0 21 Apr 2023
GeneGPT: Augmenting Large Language Models with Domain Tools for Improved Access to Biomedical Information Qiao Jin Yifan Yang Qingyu Chen Zhiyong Lu LM&MA LLMAG 14 146 0 19 Apr 2023
Improving Patient Pre-screening for Clinical Trials: Assisting Physicians with Large Language Models D. Hamer P. Schoor T. Polak Daniel Kapitan LRM LM&MA 30 14 0 14 Apr 2023
Emergent autonomous scientific research capabilities of large language models Daniil A. Boiko R. MacKnight Gabe Gomes ELM LM&Ro AI4CE LLMAG 104 119 0 11 Apr 2023
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning J. H. Caufield Harshad B. Hegde Vincent Emonet N. Harris marcin p. joachimiak ... Sierra A T Moxon Justin P Reese M. Haendel Peter N. Robinson Christopher J. Mungall 26 78 0 05 Apr 2023
End-to-End Models for Chemical-Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies Xu-Xia Ai Ramakanth Kavuluru 27 5 0 03 Apr 2023
BloombergGPT: A Large Language Model for Finance Shijie Wu Ozan Irsoy Steven Lu Vadim Dabravolski Mark Dredze Sebastian Gehrmann P. Kambadur David S. Rosenberg Gideon Mann AIFin 76 789 0 30 Mar 2023
Large AI Models in Health Informatics: Applications, Challenges, and the Future Jianing Qiu Lin Li Jiankai Sun Jiachuan Peng Peilun Shi ... Bo Xiao Wu Yuan Ningli Wang Dong Xu Benny Lo AI4MH LM&MA 42 127 0 21 Mar 2023
DeID-GPT: Zero-shot Medical Text De-Identification by GPT-4 Zheng-Long Liu Yue Huang Xiao-Xing Yu Lu Zhang Zihao Wu ... Dinggang Shen Quanzheng Li Tianming Liu Dajiang Zhu Xiang Li LM&MA MedIm 33 171 0 20 Mar 2023